cluster # 5224

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Schistosoma mansoni
cluster # 5224 cluster # 5224 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5224#0 length = 667 sequences # 2

consensus_5224#1 length = 225 sequences # 1

consensusID : consensus_5224#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 667
fasta sequence

                              [ACCGATCACAAACCTCTTACCTTCTCTTTAAGTTCGTCCTCAGACAAGTACTCACCGCGAGAGTCTCGACAACTGGACTACATTTCGCAGTTTACTTCAGACATACAACATATTTCTGGAGCAAACAATGTAGTCGCAGACGCCTTGTCTCGAATTAGCTCCTTGAACAGTTTCCAAGGAATCGAGCTTCTTAAACTCGCTCAGCTTCAAAAAGAAGACATTTGATCTTCAGCATGAGTTATCCTCGACAACTCTTAAACTAAGTATTAGGCAGATGGGAACAGGTAAGGAAACCCTACTCTGTGACACATCTACAGGTAGGGATCGTCCAATTGTACCAGAACATTATCGCCGCAACGTCTTCAATACGTCGCACAATCCTTCTCATCCAGGTGCTCGTGCAACAATCGAACTTATAGCCGAACGCTTTTGTTGGCCTGGCATGAATAAAGACGTGAGGGAGTGGGCACGCTCCTGTGTAAGCTGTCAGAAATCTAAGGTGATCAGACACAACAAATGTCCCTTAGGCTCTTTCAAAACCCCTGACGCTCGTTTCGACCACGTCCATATAGATTTAGTAGGACCCTTACCCGACTCGAACGGATACTCATATCTCCTGACATGCGTAGACCGTTTCACGCGATGGCCAGAAGCAGTACCGATTAAG]

[+] EMBL BG931022             [ACCGATCACAAACCTCTTACCTTCTCTTTAAGTTCGTCCTCAGACAAGTACTCACCGCGAGAGTCTCGACAACTGGACTACATTTCGCAGTTTACTTCAGACATACAACATATTTCTGGAGCAAACAATGTAGTCGCAGACGCCTTGTCTCGAATTAGCTCCTTGAACAGTTTCCAAGGAATCGAGCTTCTTAAACTCGCTCAGCTTCAAAAAGAAGACATTTGATCTTCAGCATGAGTTATCCTCGACAACTCTTAAACTAAGTATTAGGCAGATGGGAACAGGTAAGGAAACCCTACTCTGTGACACATCTACAGGTAGGGATCGTCCAATTGTACCAGAACATTATCGCCGCAACGTCTTCAATACGTCGCACAATCCTTCTCATC                                                                                                                                                                                                                                                                                      ]
[+] EMBL AI975406             [                                                                                                                                                                                 GGAATCGACCTTCTTAAACTCGCTCAGCTTCAAAAAGAAGACA TTGATCTTCAGCATGAGTTATCCTCGACAACTCTTAAACTAAGTATTAGGCAGATGGGAACAGGTAAGGAAACCTTACTCTGTGACACATCTACAGGTAGGGATCGTCCAATTGTACCAAAACATTATCGCCGCAACGTCTTCAATACGTTGCACAATCTTTCTCATCCAGGTGCTCGTGCAACAATCGAACTTATAGCCGAACGCTTTTGTTGGCCTGGCATGAATAAAGACGTGAGGGAGTGGGCACGCTCCTGTGTAAGCTGTCAGAAATCTAAGGTGATCAGACACAACAAATGTCCCTTAGGCTCTTTCAAAACCCCTGACGCTCGTTTCGACCACGTCCATATAGATTTAGTAGGACCCTTACCCGACTCGAACGGATACTCATATCTCCTGACATGCGTAGACCGTTTCACGCGATGGCCAGAAGCAGTACCGATTAAG]




>consensus_5224#0
ACCGATCACAAACCTCTTACCTTCTCTTTAAGTTCGTCCTCAGACAAGTACTCACCGCGA
GAGTCTCGACAACTGGACTACATTTCGCAGTTTACTTCAGACATACAACATATTTCTGGA
GCAAACAATGTAGTCGCAGACGCCTTGTCTCGAATTAGCTCCTTGAACAGTTTCCAAGGA
ATCGAGCTTCTTAAACTCGCTCAGCTTCAAAAAGAAGACATTTGATCTTCAGCATGAGTT
ATCCTCGACAACTCTTAAACTAAGTATTAGGCAGATGGGAACAGGTAAGGAAACCCTACT
CTGTGACACATCTACAGGTAGGGATCGTCCAATTGTACCAGAACATTATCGCCGCAACGT
CTTCAATACGTCGCACAATCCTTCTCATCCAGGTGCTCGTGCAACAATCGAACTTATAGC
CGAACGCTTTTGTTGGCCTGGCATGAATAAAGACGTGAGGGAGTGGGCACGCTCCTGTGT
AAGCTGTCAGAAATCTAAGGTGATCAGACACAACAAATGTCCCTTAGGCTCTTTCAAAAC
CCCTGACGCTCGTTTCGACCACGTCCATATAGATTTAGTAGGACCCTTACCCGACTCGAA
CGGATACTCATATCTCCTGACATGCGTAGACCGTTTCACGCGATGGCCAGAAGCAGTACC
GATTAAG

consensusID : consensus_5224#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 225
fasta sequence

                              [GGAAAAGTCAGATTCGAACTGGCGTCCGCGGTCTGTAGTGATTGTGGAAGGGCAGCCGAAATTTGCTACCCATCGTTCGACGAAAGCGCGGGCCACGGTTTCAGCAGTAATGTCCTTAATCAGTACTGCTTCTGGCCATCGAGTGAAACGGTCTACGGATGTTAGGAGATATGAGTATCCGTTTGAGTCGGGTAATGGTCCTAGCAAATCTAGATGAACGTGGTT]

[+] EMBL SM1247338            [GGAAAAGTCAGATTCGAACTGGCGTCCGCGGTCTGTAGTGATTGTGGAAGGGCAGCCGAAATTTGCTACCCATCGTTCGACGAAAGCGCGGGCCACGGTTTCAGCAGTAATGTCCTTAATCAGTACTGCTTCTGGCCATCGAGTGAAACGGTCTACGGATGTTAGGAGATATGAGTATCCGTTTGAGTCGGGTAATGGTCCTAGCAAATCTAGATGAACGTGGTT]




>consensus_5224#1
GGAAAAGTCAGATTCGAACTGGCGTCCGCGGTCTGTAGTGATTGTGGAAGGGCAGCCGAA
ATTTGCTACCCATCGTTCGACGAAAGCGCGGGCCACGGTTTCAGCAGTAATGTCCTTAAT
CAGTACTGCTTCTGGCCATCGAGTGAAACGGTCTACGGATGTTAGGAGATATGAGTATCC
GTTTGAGTCGGGTAATGGTCCTAGCAAATCTAGATGAACGTGGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5224#0      ACCGATCACAAACCTCTTACCTTCTCTTTAAGTTCGTCCTCAGACAAGTACTCACCGCGA 60
consensus_5224#1      ------------------------------------------------------------
                                                                                  

consensus_5224#0      GAGTCTCGACAACTGGACTACATTTCGCAGTTTACTTCAGACATACAACATATTTCTGGA 120
consensus_5224#1      ------------------------------------------------------------
                                                                                  

consensus_5224#0      GCAAACAATGTAGTCGCAGACGCCTTGTCTCGAATTAGCTCCTTGAACAGTTTCCAAGGA 180
consensus_5224#1      ------------------------------------------------------------
                                                                                  

consensus_5224#0      ATCGAGCTTCTTAAACTCGCTCAGCTTCAAAAAGAAGACATTTGATCTTCAGCATGAGTT 240
consensus_5224#1      ------------------------------------------------------------
                                                                                  

consensus_5224#0      ATCCTCGACAACTCTTAAACTAAGTATTAGGCAGATGGGAACAGGTAAGGAAACCCTACT 300
consensus_5224#1      ------------------------------------------------------------
                                                                                  

consensus_5224#0      CTGTGACACATCTACAGGTAGGGATCGTCCAATTGTACCAGAACATTATCGCCGCAACGT 360
consensus_5224#1      ------------------------------------------------------------
                                                                                  

consensus_5224#0      CTTCAATACGTCGCACAATCCTTCTCATCCAGGTGCTCGTGCAACAATCGAACTTATAGC 420
consensus_5224#1      ----------------------------------------GGAAAAGTCAGATTCG-AAC 19
                                                              * ** * **  * *   * *

consensus_5224#0      CGAACGCTTTTGTTGGCCTGGCATGAATAAAGACGTGAGGGAGTGGGCACGCTCCTGTGT 480
consensus_5224#1      TG---GCGTCCGC-GGTCTGTAGTGATTGTGGAAGGGCAGCCG-AAATTTGCTACC-CAT 73
                       *   ** *  *  ** ***   *** *   ** * *  *  *       *** *    *

consensus_5224#0      AAGCTGTCAGAAATCTAAGGTGATCAGACACAACAAATGTCCCTTAGGCTCTTTCAAAAC 540
consensus_5224#1      CGTTCGACGAAAGCGCGGGCCACGGTTTCAGCAGTAATGTCCTTAA----TCAGTACTGC 129
                           * *  **      *         **  *  ******* * *         *   *

consensus_5224#0      CCCTGACGCTCGTTTCGACCACGTCCATATAGATTTAGTAGGACCCTTACCCGACTCGAA 600
consensus_5224#1      TTCTGGCCATCGAGTGAAACG-GTCTACGGATGTTAGGAGATATGAGTATCCGTTTGAGT 188
                        *** *  ***  *  * *  *** *   *  **  *    *    ** ***  *    

consensus_5224#0      CGGATACTCATATCTCCTGACATGCGTAGACCGTTTCACGCGATGGCCAGAAGCAGTACC 660
consensus_5224#1      CGGGTAATGG----TCCTAGCAAATCTAGA----TGAACGTGGTT--------------- 225
                      *** ** *      ****  **    ****    *  *** * *                

consensus_5224#0      GATTAAG 667
consensus_5224#1      -------