These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5231#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 431 fasta sequence [TGGTATTGAGCAAACGTGGAAAATGGGCCATATTCATTTCACGAGATACTGATCCAAATCAAACGTATAAGTGCGGATCTATCATATTGGTTGGTTCAGCTGAAGACGCGAATAACCATTCATCCAGAAAATGGAAAAGTAGTGACCTCATATCGTGACCTGAAAAATTTATATCAACAGATATATTTTGAGTATGAGAACAGTTTATACACATGTTTAACAAAGAAAGGAAATGAGTCCACAAACATTCCCCAAGACTGATTATACTTAAAGGGAAATGATCCATAAATGTTTATGGACAAATACAAAGTTATACATTTACTTTACTAAACTCCTCAAAACCGGTAAGTATACTTTCGTGATTCGCACACTTTGCGAAAGCACTGAGATATGAAACGAAAAGACATATTTTACGGGAAAACGTGAAAGAT] [+] EMBL CD187704 [TGGTATTGAGCAAACGTGGAAAATGGGCCATATTCATTTCACGAGATACTGATCCAAATCAAACGTATAAGTGCGGATCTATCATATTGGTTGGTTCAGCTGAAGACGCGAATAACCATTCATCCAGAAAATGGAAAAGTAGTGACCTCATATCGTGACCTGAAAAATTTATATCAACAGATATATTTTGAGTATGAGAACAGTTTATACACATGTTTAACAAAGAAAGGAAATGAGTCCACAAACATTCCCCAAGACTGATTATACTTAAAGGGAAATGATCCATAAATGTTTATGGACAAATACAAAGTTATACATTTACTTTACTAAACTCCTCAAAACCGGTAAGTATACTTTCGTGATTCGCACACTTTGCGAAAGCACTGAGATATGAAACGAAAAGACATATTTTACGGGAAAACGTGAAAGAT] consensusID : consensus_5231#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 354 fasta sequence [GATGTACAGTTACTATTCCTGGGGTAGTAACCAAACAGAAGCATTTGAACAAATTGCTATGGCGATGTTCAACTATATGACAACAAACTACGACTCAGTGTATNCCTCACAAAGATTTGAAATTGAAGCTAATGGTCACGATATGATGTCACTACTTTTCCATTTTCTGGATGAATGGTTATTCGCGTTTTCAGCTGAACCATTTTTCATTCCGCGGATTGTTAAAATAACAGAATTTGATAAGGAGAATTTTCACATTAAATCATCTGGTTGGGGTGAACCTTTTGACATTTCAAAACATCCTCAGGGTACTGAAGTGAAAGCTATCACTTATTCAAATATGCAAATTCATGA] [+] EMBL CD192224 [GATGTACAGTTACTATTCCTGGGGTAGTAACCAAACAGAAGCATTTGAACAAATTGCTATGGCGATGTTCAACTATATGACAACAAACTACGACTCAGTGTATNCCTCACAAAGATTTGAAATTGAAGCTAATGG ] [+] EMBL CD114725 [ TAGTAACCAAACAGAAGCATTTGAACAAATTGCTATGGCGATGTTCAACTATATGACAACAAACTACGACTCAGTGGATACCTCACAAAGATTTGAAATTGAAGCTAATGGTCACGATATGATGTCACTACTTTTCCATTTTCTGGATGAATGGTTATTCGCGTTTTCAGCTGAACCATTTTTCATTCCGCGGATTGTTAAAATAACAGAATTTGATAAGGAGAATTTTCACATTAAATCATCTGGTTGGGGTGAACCTTTTGACATTTCAAAACATCCTCAGGGTACTGAAGTGAAAGCTATCACTTATTCAAATATGCAAATTCATGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5231#0 TGGTATTGAGCAAACGTGGAAAATGGGCCATATTCATTTCACGAGATACTGATCCAAATC 60 consensus_5231#1 ---------------------GATGTACAGTTACTATTCC-TGGGGTAGTAACC--AAAC 36 *** * * *** * * * ** * * * ** * consensus_5231#0 AAACGTATAAGTGCGGATCTATCATATTGGTTGGTTCAGCTGAA-GACG-CGAATAACCA 118 consensus_5231#1 AGAAGCATTTGAACAAAT-TGCTATGGCGAT--GTTCAACTATATGACAACAAACTACGA 93 * * * ** * * ** * ** * * ***** ** * *** * ** ** * consensus_5231#0 TTCATCCAGAAAATGGAAAAGTAGTGACCTCATATCGTGACCTGAAAAATTTATATCAAC 178 consensus_5231#1 CTCAGTGTATNCCTCACAAAGATTTGAAATTGAAGCTAATGGTCACGATATGATGTCACT 153 *** * **** *** * * * * * * * ** *** consensus_5231#0 AGATATATTTTGAGTATGAGAACAGTTTATACACATGTTTAACAAAGAAAGGAAATGAGT 238 consensus_5231#1 ACTTTTCCATTTTCTGGATGAATGGTT-ATTCGCGTTTTCAGCTGAACCATTTT-TCATT 211 * * * ** * *** *** ** * * * ** * * * * * * * consensus_5231#0 CCACAAACATTCCCCAAGACTGATTATACTTAAAGGGAAATGATCCATAAATGTTTATGG 298 consensus_5231#1 CCGCGGATTGTTAAAATAACAGAATTTGAT-AAGGAGAATTTTCACATTAAATCATCTGG 270 ** * * * * ** ** * * * ** * *** * *** ** * *** consensus_5231#0 ACAAATACAAAGTTATACATTTACTTTACTAAAC-TCCTCAAAACCGGTAAGTATACTTT 357 consensus_5231#1 TTGGGGTGAACCTT-----TTGACATTTCAAAACATCCTCAGGGTACTGAAGTGAAAGCT 325 ** ** ** ** ** * **** ****** **** * * consensus_5231#0 CGTGATTCGCACACTTTGCGAAAGCACTGAGATATGAAACGAAAAGACATATTTTACGGG 417 consensus_5231#1 ATCACTTATTCAAATATGCAAATTCA-TGA------------------------------ 354 ** * * *** ** ** *** consensus_5231#0 AAAACGTGAAAGAT 431 consensus_5231#1 -------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||