cluster # 5248

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Schistosoma mansoni
cluster # 5248 cluster # 5248 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5248#0 length = 613 sequences # 2

consensus_5248#1 length = 364 sequences # 1

consensusID : consensus_5248#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 613
fasta sequence

                              [GTGACTTGGTACGTGATATTAGCNGCGTAGGTTCCGAAACATAACAGTTAGGTCTCAAAAATTTCACAAACGATGTTCAGGAGCATATACATGATAATGTTATCTAGTTACATTAGAAATCAGTTCTACGACTAAATCATGCAGCATGATCACAACTAAAGGTCTAAGCTGAAAGTCATGTTAGAAATAAACGAATATATGTCGCACTTATGATAGGTTGTTTTTATTGATGAGTTACATTATAGTCTTAATAGTTTTAGTCTTTTATTTATTTTGTCTTTTATCATTGAACAAAGTATAGGTTACAGCAAATACATACCGTAACTCAGATGTAATGTTGGACGTTAACAGTTGGTATCGGAGGTAGGATCCGGCTTGCTAAACACTAACCATGTTACCATCTGTGACTCCCAGACCACATACATATCATCCTTAAACTCAGTGAATTTACGTACTGCAGGGATAAGAAGAGCTGTGTAACTCAGAATCTCACACTGTCAACTCCTAATTCCGATTGTTAGACTGCTTTAACCTGAACCCAGCATTATTGTTTATTGCTATTGACTACTTTTATTATTAAACATAGGTACCCATTATATGCTTCTTCACCATC]

[+] EMBL CD129356             [GTGACTTGGTACGTGATATTAGCNGCGTAGGTTCCGAAACATAACAGTTAGGTCTCAAAAATTTCACAAACGATGTTCAGGAGCATATACATGATAATGTTATCTAGTTACATTAGAAATCAGTTCTACGACTAAATCATGCAGCATGATCACAACTAAAGGTCTAAGCTGAAAGTCATGTTAGAAATAAACGAATATATGTCGCACTTATGATAGGTTGTTTTTATTGATGAGTTACATTATAGTCTTAATAGTTTTAGTCTTTTATTTATTTTGTCTTTTATCATTGAACAAAGTATAGGTTACAGCAAATACATACCGTAACTCAGATGTAATGTTGGACGTTAACAGTTGGTATCGGAGGTAGGATCCGGCTTGCTAAACACTAACCATGTTACCATCTGTGACTCCCAGACCACATACATATCATCCTTAAACTCAGTGAATTTACGTACTGCAGGGATAAGAAGAGCTGTGTAACTCAGAATCTCACACTGTCAACTCCTAATTCCGATTGTTAGACTGCTTTAACCTGAACCCAGCATTATTGTTTATTGCTATTGACTACTTTTATTATTAAACATAGGTACCCATTATATGCTTCTTCACCATC]
[+] EMBL CD089865             [                                                                                            GATAATGTTATCTAGTTACATTAGAAATCAGTTCTACGACTAAATCATGCAGCATGATCACAACTAAAGGTCTAAGCTGAAAGTTATGTTAGAAATAAACGAATATATGTCGCACTTATGATAGGTTGTTTTTATTGATGAGTTACATTATAGTCTTAATAGTTTTAGTCTTTTATTTATTTTGTCTTTTATCATTGAACAAAGTATAGGTTACAGCAAATACATACCGTAACTCAGATGTAATGTTGGACGTTAACAGTTGGTATCGGAGGTAGGATCCGGCTTGCTAAACACTAACCATGTTACCATCTGTGACTCCCAGACCACATACATATCATCCTTAAACTCAGTGAATTTACGTACTGCAGGGATAAGAAGAGCTGTGTAACTCAGAATCTC                                                                                                                          ]




>consensus_5248#0
GTGACTTGGTACGTGATATTAGCNGCGTAGGTTCCGAAACATAACAGTTAGGTCTCAAAA
ATTTCACAAACGATGTTCAGGAGCATATACATGATAATGTTATCTAGTTACATTAGAAAT
CAGTTCTACGACTAAATCATGCAGCATGATCACAACTAAAGGTCTAAGCTGAAAGTCATG
TTAGAAATAAACGAATATATGTCGCACTTATGATAGGTTGTTTTTATTGATGAGTTACAT
TATAGTCTTAATAGTTTTAGTCTTTTATTTATTTTGTCTTTTATCATTGAACAAAGTATA
GGTTACAGCAAATACATACCGTAACTCAGATGTAATGTTGGACGTTAACAGTTGGTATCG
GAGGTAGGATCCGGCTTGCTAAACACTAACCATGTTACCATCTGTGACTCCCAGACCACA
TACATATCATCCTTAAACTCAGTGAATTTACGTACTGCAGGGATAAGAAGAGCTGTGTAA
CTCAGAATCTCACACTGTCAACTCCTAATTCCGATTGTTAGACTGCTTTAACCTGAACCC
AGCATTATTGTTTATTGCTATTGACTACTTTTATTATTAAACATAGGTACCCATTATATG
CTTCTTCACCATC

consensusID : consensus_5248#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 364
fasta sequence

                              [GGATACCCCTGGTCAAGGTTGAGAAATCAGGCAACAGAAATAAACGAATATATGTCGCACTTATGATAGGTTGTTTTTATTGATGAGTTACATTATAGTCTTAATAGTTTTAGTCTTTTATTTATTTTGTCTTTTATCATTGAACAAAGTATAGGTTACAGCAAATACATACCGTAACTCATATGTAATGTTGGACGTTAACAGTTGGTATCGGAGGTAGGATCCGGCTTGCTAAACACTAACCATGTTACCATCTGTGACTCCCAGACCACATACATATCATCCTTAAACTCAGTGAATTTACGTACTGCAGGGATAAGAAGAGCTGTGTAACTCAGAATCTCACACTGGCAACTCCTAATTC]

[+] EMBL CD129364             [GGATACCCCTGGTCAAGGTTGAGAAATCAGGCAACAGAAATAAACGAATATATGTCGCACTTATGATAGGTTGTTTTTATTGATGAGTTACATTATAGTCTTAATAGTTTTAGTCTTTTATTTATTTTGTCTTTTATCATTGAACAAAGTATAGGTTACAGCAAATACATACCGTAACTCATATGTAATGTTGGACGTTAACAGTTGGTATCGGAGGTAGGATCCGGCTTGCTAAACACTAACCATGTTACCATCTGTGACTCCCAGACCACATACATATCATCCTTAAACTCAGTGAATTTACGTACTGCAGGGATAAGAAGAGCTGTGTAACTCAGAATCTCACACTGGCAACTCCTAATTC]




>consensus_5248#1
GGATACCCCTGGTCAAGGTTGAGAAATCAGGCAACAGAAATAAACGAATATATGTCGCAC
TTATGATAGGTTGTTTTTATTGATGAGTTACATTATAGTCTTAATAGTTTTAGTCTTTTA
TTTATTTTGTCTTTTATCATTGAACAAAGTATAGGTTACAGCAAATACATACCGTAACTC
ATATGTAATGTTGGACGTTAACAGTTGGTATCGGAGGTAGGATCCGGCTTGCTAAACACT
AACCATGTTACCATCTGTGACTCCCAGACCACATACATATCATCCTTAAACTCAGTGAAT
TTACGTACTGCAGGGATAAGAAGAGCTGTGTAACTCAGAATCTCACACTGGCAACTCCTA
ATTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5248#0      GTGACTTGGTACGTGATATTAGCNGCGTAGGTTCCGAAACATAACAGTTAGGTCTCAAAA 60
consensus_5248#1      ------------------------------------------------------------
                                                                                  

consensus_5248#0      ATTTCACAAACGATGTTCAGGAGCATATACATGATAATGTTATCTAGTTACATTAGAAAT 120
consensus_5248#1      ------------------------------------------------------------
                                                                                  

consensus_5248#0      CAGTTCTACGACTAAATCATGCAGCATGATCACAACTAAAGGTCTAAGCTGA-AAGTCAT 179
consensus_5248#1      ---------------------------GGATACCCCT---GGTCAAGGTTGAGAAATCAG 30
                                                 *   **  **   **** * * *** ** *** 

consensus_5248#0      GT--TAGAAATAAACGAATATATGTCGCACTTATGATAGGTTGTTTTTATTGATGAGTTA 237
consensus_5248#1      GCAACAGAAATAAACGAATATATGTCGCACTTATGATAGGTTGTTTTTATTGATGAGTTA 90
                      *    *******************************************************

consensus_5248#0      CATTATAGTCTTAATAGTTTTAGTCTTTTATTTATTTTGTCTTTTATCATTGAACAAAGT 297
consensus_5248#1      CATTATAGTCTTAATAGTTTTAGTCTTTTATTTATTTTGTCTTTTATCATTGAACAAAGT 150
                      ************************************************************

consensus_5248#0      ATAGGTTACAGCAAATACATACCGTAACTCAGATGTAATGTTGGACGTTAACAGTTGGTA 357
consensus_5248#1      ATAGGTTACAGCAAATACATACCGTAACTCATATGTAATGTTGGACGTTAACAGTTGGTA 210
                      ******************************* ****************************

consensus_5248#0      TCGGAGGTAGGATCCGGCTTGCTAAACACTAACCATGTTACCATCTGTGACTCCCAGACC 417
consensus_5248#1      TCGGAGGTAGGATCCGGCTTGCTAAACACTAACCATGTTACCATCTGTGACTCCCAGACC 270
                      ************************************************************

consensus_5248#0      ACATACATATCATCCTTAAACTCAGTGAATTTACGTACTGCAGGGATAAGAAGAGCTGTG 477
consensus_5248#1      ACATACATATCATCCTTAAACTCAGTGAATTTACGTACTGCAGGGATAAGAAGAGCTGTG 330
                      ************************************************************

consensus_5248#0      TAACTCAGAATCTCACACTGTCAACTCCTAATTCCGATTGTTAGACTGCTTTAACCTGAA 537
consensus_5248#1      TAACTCAGAATCTCACACTGGCAACTCCTAATTC-------------------------- 364
                      ******************** *************                          

consensus_5248#0      CCCAGCATTATTGTTTATTGCTATTGACTACTTTTATTATTAAACATAGGTACCCATTAT 597
consensus_5248#1      ------------------------------------------------------------
                                                                                  

consensus_5248#0      ATGCTTCTTCACCATC 613
consensus_5248#1      ----------------