These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5250#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 454 fasta sequence [TCGCTACATAATTATGGCAACCTTTAAATCATATTTATTGTTACGATGAAGAAGTAAAGGGGAGGGGAAATATGGTATTACATTCGTTTTTAATAATCATCTGGAGCACGTGTTTCAAAAAAATGAGGTCCGTGATTATCTACTGTAACTAAATTGTTAGGAGTATTAATAGCAGTAGAAGAATGATGTACATCAACAGGGTTGTTATTATTGGTCATACTATTATCCGATTTGACAAGATGTAATTGTTGATATGTATCTGCGTATGAAATATTCTGATTATCAGGTAGACGTTTTACTACATAAATGGTATCACCAACACATGTCATAATATATATTGAATGCTCGAAGTGTACAGTTAATCTTTTGAATTGTTGGATTTTTCTTTCACCTTCCATATTTAATAAACGACCAACTCTATTGGCGATCGCAGCAAAATGTTGGGCTAATTCTT] [+] EMBL CD140570 [TCGCTACATAATTATGGCAACCTTTAAATCATATTTATTGTTACGATGAAGAAGTAAAGGGGAGGGGAAATATGGTATTACATTCGTTTTTAATAATCATCTGGAGCACGTGTTTCAAAAAAATGAGGTCCGTGATTATCTACTGTAACTAAATTGTTAGGAGTATTAATAGCAGTAGAAGAATGATGTACATCAACAGGGTTGTTATTATTGGTCATACTATTATCCGATTTGACAAGATGTAATTGTTGATATGTATCTGCGTATGAAATATTCTGATTATCAGGTAGACGTTTTACTACATAAATGGTATCACCAACACATGTCATAATATATATTGAATGCTCGAAG ] [-] EMBL CD085481 [ TACATCAACAGGGTTGTTATTATTGGTCATACTATTATCCGATTTGACAAGATGTAATTGTTGATATGTATCTGCGTATGAAATATTCTGATTATCAGGTAGACGTTTTACTACATAAATGGTATCACCAACACATGTCATAATATATATTGAATGCTCGAAGTGTACAGTTAATCTTTTGAATTGTTGGATTTTTCTTTCACCTTCCATATTTAATAAACGACCAACTCTATTGGCGATCGCAGCAAAATGTTGGGCTAATTCTT] consensusID : consensus_5250#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 173 fasta sequence [CATNCTATTATCCGACTTGACGAGATGTAATTGTTGATATGTATCTGCGTATGAAATANTCTGATTATCAGGTAGACGTTTTACTANCATAAATGGTATNCACCCACACATNTNCATAATATATAATGNATGNCTCCGNAGTGTATCAGTTAATCTTNTGAATTTTTGGAGGN] [-] EMBL SM6992 [CATNCTATTATCCGACTTGACGAGATGTAATTGTTGATATGTATCTGCGTATGAAATANTCTGATTATCAGGTAGACGTTTTACTANCATAAATGGTATNCACCCACACATNTNCATAATATATAATGNATGNCTCCGNAGTGTATCAGTTAATCTTNTGAATTTTTGGAGGN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5250#0 TCGCTACATAATTATGGCAACCTTTAAATCATATTTATTGTTACGATGAAGAAGTAAAGG 60 consensus_5250#1 ------------------------------------------------------------ consensus_5250#0 GGAGGGGAAATATGGTATTACATTCGTTTTTAATAATCATCTGGAGCACGTGTTTCAAAA 120 consensus_5250#1 ------------------------------------------------------------ consensus_5250#0 AAATGAGGTCCGTGATTATCTACTGTAACTAAATTGTTAGGAGTATTAATAGCAGTAGAA 180 consensus_5250#1 ------------------------------------------------------------ consensus_5250#0 GAATGATGTACATCAACAGGGTTGTTATTATTGGTCATACTATTATCCGATTTGACAAGA 240 consensus_5250#1 -----------------------------------CATNCTATTATCCGACTTGACGAGA 25 *** *********** ***** *** consensus_5250#0 TGTAATTGTTGATATGTATCTGCGTATGAAATATTCTGATTATCAGGTAGACGTTTTACT 300 consensus_5250#1 TGTAATTGTTGATATGTATCTGCGTATGAAATANTCTGATTATCAGGTAGACGTTTTACT 85 ********************************* ************************** consensus_5250#0 AC-ATAAATGGTATC-ACCAACACATGTC-ATAATATATATTGAATGCT--CGAAGTGTA 355 consensus_5250#1 ANCATAAATGGTATNCACCCACACATNTNCATAATATATAATGNATGNCTCCGNAGTGTA 145 * *********** *** ****** * ********** ** *** ** ****** consensus_5250#0 -CAGTTAATCTTTTGAATTGTTGGATTTTTCTTTCACCTTCCATATTTAATAAACGACCA 414 consensus_5250#1 TCAGTTAATCTTNTGAATTTTTGGAGGN-------------------------------- 173 *********** ****** ***** consensus_5250#0 ACTCTATTGGCGATCGCAGCAAAATGTTGGGCTAATTCTT 454 consensus_5250#1 ---------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||