These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_526#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 683 fasta sequence [GGCACGAGGTCTAAATCTTTGCGTTCCTGAATAATACTTATATCCAGTGTTTTCTGTGGTTTGCTTCCATTATGTGACTCAGATTTCCCAAAAAACCATGCATACAATTTAAGATNNNNNNNNNNNNNNNNNNNNNNNNACCGTTTACTTACTTACTTGCCTGTTACCCCTCGTGGAGAATGCTGGTGAGCGGCCTATGCTCCTCGACGAGGAGTAAAAGGCGTAAGTGAGTAAGTAAGTAAGTAAGTAAGTAAGTACATTTAGATGGTAATATTTTATTTCATCATAGTTTTCTCATTTTTTCTTCGCCTTCACTGTGTTTCTGTGTTTCTTCCTGAACTGTATTTATGTTGTTTTAGTTGTTAATTATTCTTAGCGGCAGCTATATTGNNNNNNNNNNNNNNNNNNNNNNNNCTTGAGTTGACTGGGATTGTCCATTTTGATTGTGAATTGAAGCACTTTTCCAGAATTGGAAACACTTTGTGTTATAAAGCAATAAAATATTATCCTTTGGAAGGATTTTTACGTGATCTGTTCAGAAAGGGTAGTGTATTCTACATTCATTATCAATTTGTCTATTTATTGTAATTTAGATAGATTATTGAGGGNAACAATATTGGTTGAATAGTGAGCGGTATATTTGTTTAGTAATATGTACATTTGTATTTACATGCATTTAAACC] [+] EMBL CD081057 [GGCACGAGGTCTAAATCTTTGCGTTCCTGAATAATACTTATATCCAGTGTTTTCTGTGGTTTGCTTCCATTATGTGACTCAGATTTCCCAAAAAACCATGCATACAATTTAAGATNNNNNNNNNNNNNNNNNNNNNNNNACCGTTTACTTACTTACTTGCCTGTTACCCCTCGTGGAGAATGCTGGTGAGCGGCCTATGCTCCTCGACGAGGAGTAAAAGGCGTAAGTGAGTAAGTAAGTAAGTAAGTAAGTAAGTACATTTAGATGGTAATATTTTATTTCATCATAGTTTTCTCATTTTTTCTTCGCCTTCACTGTGTTTCTGTGTTTCTTCCTGAACTGTATTTATGTTGTTTTAGTTGTTAATTATTCTTAGCGGCAGCTATATTGNNNNNNNNNNNNNNNNNNNNNNNNCTTGAGTTGACTGGGATTGTCCATTTTGATTGTGAATTGAAGCACTTTTCCAGAATTGGAAACACTTTGTGTTATAAAGCAATAAAATATTATCCTTTGGAAGGATTTTTACGTGATCTGTTCAGAAAGGGTAGTGTATTCTACATTCATTATCAATTTGTCTATTTATTGTAATTTAGATAGATTATTGAGGGNAACAATATTGGTTGAATAGTGAGCGGTATATTTGTTTAGTAATATGTACATTTGTATTTACATGCATTTAAACC] consensusID : consensus_526#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 541 fasta sequence [ACGAGGAGTAAAAGGCGTAAGTGAGTAAGTAAGTAAGTAAGTAAGTAAGTCCATTTTGTTGGTCTTTTTGATGCCATTTGAGATGGTAATATTTTATTTCATCATAGTTTTCTCATTTTTTCTTCGCCTTCACTGTGTTTCTGTGTTTCTTCCTGAACGGTATTTATGTTGTTTTAGTTGTTAATTATTCTTAGCGGCAGCTATATTGATTGTTCCCCCTTTTACTGTGCTGCTTGAGTTGACTGGGATTGTCCATTTTGATTGTGAATTGAAGCACTTTTCCAGAATTGGAAACACTTTGTGTTATAAAGCAATAAAATATTATCCTTTGGAAGGATTTTTACGTGATCTGTTCAGAAAGGGTAGTGTAACACTTACTTTTTGATGCACTCGGTAATTTTCTTACATTCATTATCAATTTGTCTATTTATTGTAATTTAGATAGATTATTGAGGGAACAAATTATTGGTTGAATAAGTGAGCGGTAATATTTGTTTAGGTAATAATGTACATTTGTATTTCCAATGCAATTTAGACCCAT] [-] EMBL CD074881 [ACGAGGAGTAAAAGGCGTAAGTGAGTAAGTAAGTAAGTAAGTAAGTAAGTCCATTTTGTTGGTCTTTTTGATGCCATTTGAGATGGTAATATTTTATTTCATCATAGTTTTCTCATTTTTTCTTCGCCTTCACTGTGTTTCTGTGTTTCTTCCTGAACGGTATTTATGTTGTTTTAGTTGTTAATTATTCTTAGCGGCAGCTATATTGATTGTTCCCCCTTTTACTGTGCTGCTTGAGTTGACTGGGATTGTCCATTTTGATTGTGAATTGAAGCACTTTTCCAGAATTGGAAACACTTTGTGTTATAAAGCAATAAAATATTATCCTTTGGAAGGATTTTTACGTGATCTGTTCAGAAAGGGTAGTGTAACACTTACTTTTTGATGCACTCGGTAATTTTCTTACATTCATTATCAATTTGTCTATTTATTGTAATTTAGATAGATTATTGAGGGAACAAATTATTGGTTGAATAAGTGAGCGGTAATATTTGTTTAGGTAATAATGTACATTTGTATTTCCAATGCAATTTAGACCCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_526#0 GGCACGAGGTCTAAATCTTTGCGTTCCTGAATAATACTTATATCCAGTGTTTTCTGTGGT 60 consensus_526#1 ------------------------------------------------------------ consensus_526#0 TTGCTTCCATTATGTGACTCAGATTTCCCAAAAAACCATGCATACAATTTAAGATNNNNN 120 consensus_526#1 ------------------------------------------------------------ consensus_526#0 NNNNNNNNNNNNNNNNNNNACCGTTTACTTACTTACTTGCCTGTTACCCCTCGTGGAGAA 180 consensus_526#1 ------------------------------------------------------------ consensus_526#0 TGCTGGTGAGCGGCCTATGCTCCTCGACGAGGAGTAAAAGGCGTAAGTGAGTAAGTAAGT 240 consensus_526#1 --------------------------ACGAGGAGTAAAAGGCGTAAGTGAGTAAGTAAGT 34 ********************************** consensus_526#0 AAGTAAGTAAGTAAGTACATTT------------------------AGATGGTAATATTT 276 consensus_526#1 AAGTAAGTAAGTAAGTCCATTTTGTTGGTCTTTTTGATGCCATTTGAGATGGTAATATTT 94 **************** ***** ************** consensus_526#0 TATTTCATCATAGTTTTCTCATTTTTTCTTCGCCTTCACTGTGTTTCTGTGTTTCTTCCT 336 consensus_526#1 TATTTCATCATAGTTTTCTCATTTTTTCTTCGCCTTCACTGTGTTTCTGTGTTTCTTCCT 154 ************************************************************ consensus_526#0 GAACTGTATTTATGTTGTTTTAGTTGTTAATTATTCTTAGCGGCAGCTATATTGNNNNNN 396 consensus_526#1 GAACGGTATTTATGTTGTTTTAGTTGTTAATTATTCTTAGCGGCAGCTATATTGATTGTT 214 **** ************************************************* consensus_526#0 NNNNNNNNNNNNNNNNNNCTTGAGTTGACTGGGATTGTCCATTTTGATTGTGAATTGAAG 456 consensus_526#1 CCCCCTTTTACTGTGCTGCTTGAGTTGACTGGGATTGTCCATTTTGATTGTGAATTGAAG 274 ****************************************** consensus_526#0 CACTTTTCCAGAATTGGAAACACTTTGTGTTATAAAGCAATAAAATATTATCCTTTGGAA 516 consensus_526#1 CACTTTTCCAGAATTGGAAACACTTTGTGTTATAAAGCAATAAAATATTATCCTTTGGAA 334 ************************************************************ consensus_526#0 GGATTTTTACGTGATCTGTTCAGAAAGGGTAGTGTA------------------------ 552 consensus_526#1 GGATTTTTACGTGATCTGTTCAGAAAGGGTAGTGTAACACTTACTTTTTGATGCACTCGG 394 ************************************ consensus_526#0 ------TTCTACATTCATTATCAATTTGTCTATTTATTGTAATTTAGATAGATTATTGAG 606 consensus_526#1 TAATTTTCTTACATTCATTATCAATTTGTCTATTTATTGTAATTTAGATAGATTATTGAG 454 * *************************************************** consensus_526#0 GGNAACAAT-ATTGGTTGAATA-GTGAGCGGTA-TATTTGTTTAG-TAATA-TGTACATT 661 consensus_526#1 GGAACAAATTATTGGTTGAATAAGTGAGCGGTAATATTTGTTTAGGTAATAATGTACATT 514 ** * *** ************ ********** *********** ***** ******** consensus_526#0 TGTATTTACA-TGCA-TTTAAACC--- 683 consensus_526#1 TGTATTTCCAATGCAATTTAGACCCAT 541 ******* ** **** **** *** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||