cluster # 5273

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Schistosoma mansoni
cluster # 5273 cluster # 5273 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5273#0 length = 363 sequences # 2

consensus_5273#1 length = 267 sequences # 1

consensusID : consensus_5273#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 363
fasta sequence

                              [TACAAAGCTAAAAACATTCGAACATCACCAGTTGGACTTGCGCTATCATGTTGTGCGATTGCTGTCCATTCAAACTGTGAATTTCTTGGTAGAAACAATACTTTTGGAGATTTTTCCAACTCTATTTGTACACATCTCAATAAGTGTGCTGATTTAACAAAATCAATTTATTGCCAAAGAAATTCACCTTTCTTTTGTATCGAGGATGTTCACCAACTTAATGAATTGCAAAGTATGGCCTCTGCATTAAATCATTTANTTGCACTGATTGAGGTGCTTTGTCCGTTTTATATCTCANATCTTGACGAATTTGATACTTCACATTTAAAAAATTCTTTCATAAGCTNTTATCCACTNTGGATG]

[+] EMBL CD118004             [TACAAAGCTAAAAACATTCGAACATCACCAGTTGGACTTGCGCTATCATGTTGTGCGATTGCTGTCCATTCAAACTGTGAATTTCTTGGTAGAAACAATACTTTTGGAGATTTTTCCAACTCTATTTGTACACATCTCAATAAGTGTGCTGATTTAACAAAATCAATTTATTGCCAAAGAAATTCACCTTTCTTTTGTATCGAGGATGTTCACCAACTTAATGAATTGCAAAGTATGGCCTCTGCATTAAATCATTTANTTGCACTGATTGAGGTGCTTTGTCCGTTTTATATCTCANATCTTGACGAATTTGATACTTCACATTTAAAAAATTCTTTCATAAGCTNTTATCCACTNTGGAT ]
[-] EMBL CD118012             [ atacAGCTAANAACATTCGAACATCACCAGTTGGACTTGCGCTATCATGTTGTGCGATTGCTGTCCATTCAAACTGTGAATTTCTTGGTAGAAACAATACTTTTGGAGATTTTTCCAACTCTATTTGTACACATCTCAATAAGTGTGCTGATTTAGCAAAATCAATTTATTGCCAAAGAAATTCACCTTTCTTTTGTATCGAGGATGTTCACCAACTTAATGAATTGCAAAGTATGGCCTCTGCATTAAATCATTTAGTTGCACTGATTGAGGTGCTTTGTCCGTTTTATATCTCAAATCTTGACGAATTTGATACTTCACATTTAAAAAATTCTTTCATAAGCTTTTATCCACTTTGGATG]




>consensus_5273#0
TACAAAGCTAAAAACATTCGAACATCACCAGTTGGACTTGCGCTATCATGTTGTGCGATT
GCTGTCCATTCAAACTGTGAATTTCTTGGTAGAAACAATACTTTTGGAGATTTTTCCAAC
TCTATTTGTACACATCTCAATAAGTGTGCTGATTTAACAAAATCAATTTATTGCCAAAGA
AATTCACCTTTCTTTTGTATCGAGGATGTTCACCAACTTAATGAATTGCAAAGTATGGCC
TCTGCATTAAATCATTTANTTGCACTGATTGAGGTGCTTTGTCCGTTTTATATCTCANAT
CTTGACGAATTTGATACTTCACATTTAAAAAATTCTTTCATAAGCTNTTATCCACTNTGG
ATG

consensusID : consensus_5273#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 267
fasta sequence

                              [GCGGCCAAAAATTCGGCACGAGGTTTGTTTGTAGAGATCGTGATACTGCTGCTGCTGGAGATCATGTCAGCTCTATTCGCACACATCTTGATAAGTGTGCTGATTCGGCCAAATCAGTTTATTACCAGGGCAATGCACCATCCTTTTGTATCGAGGACGTCCATCAGCTTAATGAATTACAAAGTATGGCCTCTGGATTAAAGCATTTAGTTGCACTGATTGAGGTGCTTTGTCCGTTTTATAACTCANATAGTAATGAATNTGATA]

[+] EMBL CD077677             [GCGGCCAAAAATTCGGCACGAGGTTTGTTTGTAGAGATCGTGATACTGCTGCTGCTGGAGATCATGTCAGCTCTATTCGCACACATCTTGATAAGTGTGCTGATTCGGCCAAATCAGTTTATTACCAGGGCAATGCACCATCCTTTTGTATCGAGGACGTCCATCAGCTTAATGAATTACAAAGTATGGCCTCTGGATTAAAGCATTTAGTTGCACTGATTGAGGTGCTTTGTCCGTTTTATAACTCANATAGTAATGAATNTGATA]




>consensus_5273#1
GCGGCCAAAAATTCGGCACGAGGTTTGTTTGTAGAGATCGTGATACTGCTGCTGCTGGAG
ATCATGTCAGCTCTATTCGCACACATCTTGATAAGTGTGCTGATTCGGCCAAATCAGTTT
ATTACCAGGGCAATGCACCATCCTTTTGTATCGAGGACGTCCATCAGCTTAATGAATTAC
AAAGTATGGCCTCTGGATTAAAGCATTTAGTTGCACTGATTGAGGTGCTTTGTCCGTTTT
ATAACTCANATAGTAATGAATNTGATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5273#0      TACAAAGCTAAAAACATTCGAACATCACCAGTTGGACTTGCGCTATCATGTTGTGCGATT 60
consensus_5273#1      -------------------------------------GCGGCCAAAAATTCGGCACGAGG 23
                                                             *  * *  **   *  ***  

consensus_5273#0      GCTGTCCATTCAAACTGTGAATTTCTTGGTAGAAACAATACTTTTGGAGATTTTTCCAAC 120
consensus_5273#1      TTTGTTTGTAGAGATCGTGATACTGCTG------------CTGCTGGAGATCATGTCAGC 71
                        ***   *  * *  ****   *  **            **  *******  *  ** *

consensus_5273#0      TCTATTTGTACACATCTCAATAAGTGTGCTGATTTAACAAAATCAATTTATTGCCAAAGA 180
consensus_5273#1      TCTATTCGCACACATCTTGATAAGTGTGCTGATTCGGCCAAATCAGTTTATTACCAGGGC 131
                      ****** * ********  ***************   * ****** ****** ***  * 

consensus_5273#0      AATTCACCTTTCTTTTGTATCGAGGATGTTCACCAACTTAATGAATTGCAAAGTATGGCC 240
consensus_5273#1      AATGCACCATCCTTTTGTATCGAGGACGTCCATCAGCTTAATGAATTACAAAGTATGGCC 191
                      *** **** * *************** ** ** ** *********** ************

consensus_5273#0      TCTGCATTAAATCATTTANTTGCACTGATTGAGGTGCTTTGTCCGTTTTATATCTCANAT 300
consensus_5273#1      TCTGGATTAAAGCATTTAGTTGCACTGATTGAGGTGCTTTGTCCGTTTTATAACTCANAT 251
                      **** ****** ****** ********************************* *******

consensus_5273#0      CTTGACGAATTTGATACTTCACATTTAAAAAATTCTTTCATAAGCTNTTATCCACTNTGG 360
consensus_5273#1      AGTAATGAATNTGATA-------------------------------------------- 267
                        * * **** *****                                            

consensus_5273#0      ATG 363
consensus_5273#1      ---