These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5273#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 363 fasta sequence [TACAAAGCTAAAAACATTCGAACATCACCAGTTGGACTTGCGCTATCATGTTGTGCGATTGCTGTCCATTCAAACTGTGAATTTCTTGGTAGAAACAATACTTTTGGAGATTTTTCCAACTCTATTTGTACACATCTCAATAAGTGTGCTGATTTAACAAAATCAATTTATTGCCAAAGAAATTCACCTTTCTTTTGTATCGAGGATGTTCACCAACTTAATGAATTGCAAAGTATGGCCTCTGCATTAAATCATTTANTTGCACTGATTGAGGTGCTTTGTCCGTTTTATATCTCANATCTTGACGAATTTGATACTTCACATTTAAAAAATTCTTTCATAAGCTNTTATCCACTNTGGATG] [+] EMBL CD118004 [TACAAAGCTAAAAACATTCGAACATCACCAGTTGGACTTGCGCTATCATGTTGTGCGATTGCTGTCCATTCAAACTGTGAATTTCTTGGTAGAAACAATACTTTTGGAGATTTTTCCAACTCTATTTGTACACATCTCAATAAGTGTGCTGATTTAACAAAATCAATTTATTGCCAAAGAAATTCACCTTTCTTTTGTATCGAGGATGTTCACCAACTTAATGAATTGCAAAGTATGGCCTCTGCATTAAATCATTTANTTGCACTGATTGAGGTGCTTTGTCCGTTTTATATCTCANATCTTGACGAATTTGATACTTCACATTTAAAAAATTCTTTCATAAGCTNTTATCCACTNTGGAT ] [-] EMBL CD118012 [ atacAGCTAANAACATTCGAACATCACCAGTTGGACTTGCGCTATCATGTTGTGCGATTGCTGTCCATTCAAACTGTGAATTTCTTGGTAGAAACAATACTTTTGGAGATTTTTCCAACTCTATTTGTACACATCTCAATAAGTGTGCTGATTTAGCAAAATCAATTTATTGCCAAAGAAATTCACCTTTCTTTTGTATCGAGGATGTTCACCAACTTAATGAATTGCAAAGTATGGCCTCTGCATTAAATCATTTAGTTGCACTGATTGAGGTGCTTTGTCCGTTTTATATCTCAAATCTTGACGAATTTGATACTTCACATTTAAAAAATTCTTTCATAAGCTTTTATCCACTTTGGATG] consensusID : consensus_5273#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 267 fasta sequence [GCGGCCAAAAATTCGGCACGAGGTTTGTTTGTAGAGATCGTGATACTGCTGCTGCTGGAGATCATGTCAGCTCTATTCGCACACATCTTGATAAGTGTGCTGATTCGGCCAAATCAGTTTATTACCAGGGCAATGCACCATCCTTTTGTATCGAGGACGTCCATCAGCTTAATGAATTACAAAGTATGGCCTCTGGATTAAAGCATTTAGTTGCACTGATTGAGGTGCTTTGTCCGTTTTATAACTCANATAGTAATGAATNTGATA] [+] EMBL CD077677 [GCGGCCAAAAATTCGGCACGAGGTTTGTTTGTAGAGATCGTGATACTGCTGCTGCTGGAGATCATGTCAGCTCTATTCGCACACATCTTGATAAGTGTGCTGATTCGGCCAAATCAGTTTATTACCAGGGCAATGCACCATCCTTTTGTATCGAGGACGTCCATCAGCTTAATGAATTACAAAGTATGGCCTCTGGATTAAAGCATTTAGTTGCACTGATTGAGGTGCTTTGTCCGTTTTATAACTCANATAGTAATGAATNTGATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5273#0 TACAAAGCTAAAAACATTCGAACATCACCAGTTGGACTTGCGCTATCATGTTGTGCGATT 60 consensus_5273#1 -------------------------------------GCGGCCAAAAATTCGGCACGAGG 23 * * * ** * *** consensus_5273#0 GCTGTCCATTCAAACTGTGAATTTCTTGGTAGAAACAATACTTTTGGAGATTTTTCCAAC 120 consensus_5273#1 TTTGTTTGTAGAGATCGTGATACTGCTG------------CTGCTGGAGATCATGTCAGC 71 *** * * * **** * ** ** ******* * ** * consensus_5273#0 TCTATTTGTACACATCTCAATAAGTGTGCTGATTTAACAAAATCAATTTATTGCCAAAGA 180 consensus_5273#1 TCTATTCGCACACATCTTGATAAGTGTGCTGATTCGGCCAAATCAGTTTATTACCAGGGC 131 ****** * ******** *************** * ****** ****** *** * consensus_5273#0 AATTCACCTTTCTTTTGTATCGAGGATGTTCACCAACTTAATGAATTGCAAAGTATGGCC 240 consensus_5273#1 AATGCACCATCCTTTTGTATCGAGGACGTCCATCAGCTTAATGAATTACAAAGTATGGCC 191 *** **** * *************** ** ** ** *********** ************ consensus_5273#0 TCTGCATTAAATCATTTANTTGCACTGATTGAGGTGCTTTGTCCGTTTTATATCTCANAT 300 consensus_5273#1 TCTGGATTAAAGCATTTAGTTGCACTGATTGAGGTGCTTTGTCCGTTTTATAACTCANAT 251 **** ****** ****** ********************************* ******* consensus_5273#0 CTTGACGAATTTGATACTTCACATTTAAAAAATTCTTTCATAAGCTNTTATCCACTNTGG 360 consensus_5273#1 AGTAATGAATNTGATA-------------------------------------------- 267 * * **** ***** consensus_5273#0 ATG 363 consensus_5273#1 --- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||