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Schistosoma mansoni
cluster # 5281 cluster # 5281       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5281#0 length = 1052 sequences # 2  
consensus_5281#1 length = 611 sequences # 1  

consensusID : consensus_5281#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1052
fasta sequence
                              [GCCAGNAATTCGGCACGAGGTCTCAGGCCACGAACATGATCCTAATCATCGTTATGTTACAGTCGTCTGGGTGTATTCCTGCTAAAGAAGAAAACGTAATACACACATTCCCTTCCAAATCACACGATGCACAGTTTTGTGAATTCAGTGCGTCATCATCAGCCAGTGTTGATGTTGGTGATGACTCTTTGGCATCTGCTACTCTTACTGAAGTTACTAAAAAGCAATCTCTGTGCAGTTCTAAAGATATTGGTTGTTGTAGTAGTTGTCCTGTTGTTGGTAGCTCACCCAGTATCCATACAACTTCTTCAAGTTCTTCATTGGGATCATGTGCTTGTTCGAGTAAATTAAATTTCCATGATTCATCGACACAATGTCAGCAATTAGAACATGTAGTAACTGAATCTCCCTCATCCAAAAGTAATATTCTACAAGGAAGCAAAACGTCTTCCAGTAATGAACAAAATACATCACCGCCACATCAAATTAAAACAGATAATTAACTTCACCGTAGTGTTATAACCAAAAGTATCTAGTGGATTAGCTAGCTAATTTGCTTAACGTATCTTTAAAATAGTGTACACACTTGGGGTAATCTGCAAATCCTATGGACAGCTGGCTCAAACACTTGTTTTGTATCGATGATTATCTTTCCAGAACAATCAGAAATTTAACGATATACGAACTCAGTTTTTGGACGTTGAGGTGTTATGAATGTATTATACCATACACAGTAGTCTTCGGTTGTCAAGTGCTATNCAGC-AAGACATTGTTAAAATTTTATATCATACTTCCCCGCTCACTTGTTGCAGATCGTAGCTTCAGATAAAAGCTTGGAAAATTGTTTACAGATTGAAAGAGGTGGGTCCTAACTCATCCTGTTTTACACCTCTGCTTAATGTATGCATATATATATCCTGCATAAAAGTTCGGTTTTCTCTTTAACCTAATATCGCATAGATACTTTGCCCGGTGTTTTCGAGATCCTCGTATTCTGATTTCTCTATTTTTGTGTCCATACTGTTCCAACACCTATCTTATGTACAGATAGC]

[+] EMBL CD081534             [GCCAGNAATTCGGCACGAGGTCTCAGGCCACGAACATGATCCTAATCATCGTTATGTTACAGTCGTCTGGGTGTATTCCTGCTAAAGAAGAAAACGTAATACACACATTCCCTTCCAAATCACACGATGCACAGTTTTGTGAATTCAGTGCGTCATCATCAGCCAGTGTTGATGTTGGTGATGACTCTTTGGCATCTGCTACTCTTACTGAAGTTACTAAAAAGCAATCTCTGTGCAGTTCTAAAGATATTGGTTGTTGTAGTAGTTGTCCTGTTGTTGGTAGCTCACCCAGTATCCATACAACTTCTTCAAGTTCTTCATTGGGATCATGTGCTTGTTCGAGTAAATTAAATTTCCATGATTCATCGACACAATGTCAGCAATTAGAACATGTAGTAACTGAATCTCCCTCATCCAAAAGTAATATTCTACAAGGAAGCAAAACGTCTTCCAGTAATGAACAAAATACATCACCGCCACATCAAATTAAAACAGATAATTAACTTCACCGTAGTGTTATAACCAAAAGTATCTAGTGGATTAGCTAGCTAATTTGCTTAACGTATCTTTAAAATAGTGTACACACTTGGGGTAATCTGCAAATCCTATGGACAGCTGGCTCAAACACTTGTTTTGTATCGATGATTATCTTTCCAGAACAATCAGAAATTTAACGATATACGAACTCAGTTTTTGGACGTTGAGGTGTTATGAATGTATTATACCATACACAGTAGTCTTCGGTTGTCAAGTGCTATNCAGC AAGACATTGTTAAAATTTTATATCATACTTCCCCGCTCACTTGTTGCAGATCGTAGCTTCAGATAAAA                                                                                                                                                                                                                             ]
[-] EMBL CD075357             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CACCGCCACATCAAATTAAAACAGATAATTAACTTCACCGTAGTGTTATAACCAAAAGTATCTAGTGGATTAGCTAGCTAATTTGCTTAACGTATCTTTAAAATAGTGTACACACTTGGGGTAATCTGCAAATCCTATGGACAGCTGGCTCAAACACTTGTTTTGTATCGATGATTATCTTTCCAGAACAATCAGAAATTTAACGATATACGAACTCAGTTTTTGGACGTTGAGGTGTTATGAATGTATTATACCATACACAGTAGTCTTCGGTTGTCAAGTGCTAT CAGCAAAGACATTGTTAAAATTTTATATCATACTTCCCCGCTCACTTGTTGCAGATCGTAGCTTCAGATAAAAGCTTGGAAAATTGTTTACAGATTGAAAGAGGTGGGTCCTAACTCATCCTGTTTTACACCTCTGCTTAATGTATGCATATATATATCCTGCATAAAAGTTCGGTTTTCTCTTTAACCTAATATCGCATAGATACTTTGCCCGGTGTTTTCGAGATCCTCGTATTCTGATTTCTCTATTTTTGTGTCCATACTGTTCCAACACCTATCTTATGTACAGATAGC]


>consensus_5281#0 GCCAGNAATTCGGCACGAGGTCTCAGGCCACGAACATGATCCTAATCATCGTTATGTTAC AGTCGTCTGGGTGTATTCCTGCTAAAGAAGAAAACGTAATACACACATTCCCTTCCAAAT CACACGATGCACAGTTTTGTGAATTCAGTGCGTCATCATCAGCCAGTGTTGATGTTGGTG ATGACTCTTTGGCATCTGCTACTCTTACTGAAGTTACTAAAAAGCAATCTCTGTGCAGTT CTAAAGATATTGGTTGTTGTAGTAGTTGTCCTGTTGTTGGTAGCTCACCCAGTATCCATA CAACTTCTTCAAGTTCTTCATTGGGATCATGTGCTTGTTCGAGTAAATTAAATTTCCATG ATTCATCGACACAATGTCAGCAATTAGAACATGTAGTAACTGAATCTCCCTCATCCAAAA GTAATATTCTACAAGGAAGCAAAACGTCTTCCAGTAATGAACAAAATACATCACCGCCAC ATCAAATTAAAACAGATAATTAACTTCACCGTAGTGTTATAACCAAAAGTATCTAGTGGA TTAGCTAGCTAATTTGCTTAACGTATCTTTAAAATAGTGTACACACTTGGGGTAATCTGC AAATCCTATGGACAGCTGGCTCAAACACTTGTTTTGTATCGATGATTATCTTTCCAGAAC AATCAGAAATTTAACGATATACGAACTCAGTTTTTGGACGTTGAGGTGTTATGAATGTAT TATACCATACACAGTAGTCTTCGGTTGTCAAGTGCTATNCAGCAAGACATTGTTAAAATT TTATATCATACTTCCCCGCTCACTTGTTGCAGATCGTAGCTTCAGATAAAAGCTTGGAAA ATTGTTTACAGATTGAAAGAGGTGGGTCCTAACTCATCCTGTTTTACACCTCTGCTTAAT GTATGCATATATATATCCTGCATAAAAGTTCGGTTTTCTCTTTAACCTAATATCGCATAG ATACTTTGCCCGGTGTTTTCGAGATCCTCGTATTCTGATTTCTCTATTTTTGTGTCCATA CTGTTCCAACACCTATCTTATGTACAGATAGC



consensusID : consensus_5281#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 611
fasta sequence
                              [TCTATATTTATCTTTATAACAGACGTACATTAGGGCGCTTGATTAATTCACAGCCAGAAGATGATAAATGAAACAATTCCCTAGGCACAAAAATACCACAATCTAAAGTAAAAATAGCCTGAGCGGAAAGAAAGGTAAAGCAGTGTTCAATATACATAGTAAGAACACAAAGAAGAGCAACATTTCATTGTGTGGCATACATGTCCCTTTTACCCATAAGTTTGCTAATAACAAAGTGTTGTGACAAAGTCAAAATACAAAGAATTATGTTAGGATTTTAAACTACATATAAGAACTGACAACGAAGTAATATTATCTTAAAACAATTTGTCTTAATAATTTAAGTAGTTAATCTGTATGCGTACATTTTAAATAAGTAGGAAAATAAGTTACTTTTCTGCAGAAACGAAGAAATGAGCTGCGAGGTACGAAGCAGCTAATACAGTAAGTCAACAAGATGAAACAACCAACACGAAAGAATAATAATTGCTGCGATGCTTTTCTCTGTAGTAAAATTAAGTAAATCTCTTTCAATCTGTAAACAATTTTCCAAGCTTTTATCTGAAGCTACGATCTGCAACAAGTGAGCGGNGGAAGTATGATATAAAATT]

[+] EMBL CD077266             [TCTATATTTATCTTTATAACAGACGTACATTAGGGCGCTTGATTAATTCACAGCCAGAAGATGATAAATGAAACAATTCCCTAGGCACAAAAATACCACAATCTAAAGTAAAAATAGCCTGAGCGGAAAGAAAGGTAAAGCAGTGTTCAATATACATAGTAAGAACACAAAGAAGAGCAACATTTCATTGTGTGGCATACATGTCCCTTTTACCCATAAGTTTGCTAATAACAAAGTGTTGTGACAAAGTCAAAATACAAAGAATTATGTTAGGATTTTAAACTACATATAAGAACTGACAACGAAGTAATATTATCTTAAAACAATTTGTCTTAATAATTTAAGTAGTTAATCTGTATGCGTACATTTTAAATAAGTAGGAAAATAAGTTACTTTTCTGCAGAAACGAAGAAATGAGCTGCGAGGTACGAAGCAGCTAATACAGTAAGTCAACAAGATGAAACAACCAACACGAAAGAATAATAATTGCTGCGATGCTTTTCTCTGTAGTAAAATTAAGTAAATCTCTTTCAATCTGTAAACAATTTTCCAAGCTTTTATCTGAAGCTACGATCTGCAACAAGTGAGCGGNGGAAGTATGATATAAAATT]


>consensus_5281#1 TCTATATTTATCTTTATAACAGACGTACATTAGGGCGCTTGATTAATTCACAGCCAGAAG ATGATAAATGAAACAATTCCCTAGGCACAAAAATACCACAATCTAAAGTAAAAATAGCCT GAGCGGAAAGAAAGGTAAAGCAGTGTTCAATATACATAGTAAGAACACAAAGAAGAGCAA CATTTCATTGTGTGGCATACATGTCCCTTTTACCCATAAGTTTGCTAATAACAAAGTGTT GTGACAAAGTCAAAATACAAAGAATTATGTTAGGATTTTAAACTACATATAAGAACTGAC AACGAAGTAATATTATCTTAAAACAATTTGTCTTAATAATTTAAGTAGTTAATCTGTATG CGTACATTTTAAATAAGTAGGAAAATAAGTTACTTTTCTGCAGAAACGAAGAAATGAGCT GCGAGGTACGAAGCAGCTAATACAGTAAGTCAACAAGATGAAACAACCAACACGAAAGAA TAATAATTGCTGCGATGCTTTTCTCTGTAGTAAAATTAAGTAAATCTCTTTCAATCTGTA AACAATTTTCCAAGCTTTTATCTGAAGCTACGATCTGCAACAAGTGAGCGGNGGAAGTAT GATATAAAATT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5281#0      GCCAGNAATTCGGCACGAGGTCTCAGGCCACGAACATGATCCTAATCATCGTTATGTTAC 60
consensus_5281#1      ------------------------------------------------------------
                                                                                  

consensus_5281#0      AGTCGTCTGGGTGTATTCCTGCTAAAGAAGAAAACGTAATACACACATTCCCTTCCAAAT 120
consensus_5281#1      ------------------------------------------------------------
                                                                                  

consensus_5281#0      CACACGATGCACAGTTTTGTGAATTCAGTGCGTCATCATCAGCCAGTGTTGATGTTGGTG 180
consensus_5281#1      ------------------------------------------------------------
                                                                                  

consensus_5281#0      ATGACTCTTTGGCATCTGCTACTCTTACTGAAGTTACTAAAAAGCAATCTCTGTGCAGTT 240
consensus_5281#1      ------------------------------------------------------------
                                                                                  

consensus_5281#0      CTAAAGATATTGGTTGTTGTAGTAGTTGTCCTGTTGTTGGTAGCTCACCCAGTATCCATA 300
consensus_5281#1      ------------------------------------------------------------
                                                                                  

consensus_5281#0      CAACTTCTTCAAGTTCTTCATTGGGATCATGTGCTTGTTCGAGTAAATTAAATTTCCATG 360
consensus_5281#1      -------TCTATATTTATCTTTATAA-CAGACGTACATTAGGGCG-------CTTGATTA 45
                             *  *  **  ** **   * **   *    ** * *          **   * 

consensus_5281#0      ATTCATCGACACAATGTCAGCAATTAGAACATG---TAGTAACTGAATCTCCCTCATCCA 417
consensus_5281#1      ATTCACAGCCAGAAGATGATAAATGAAACAATTCCCTAGGCACAAAAATACCACAATCTA 105
                      *****  * ** **  * *  *** * *  **    ***  **  **   **   *** *

consensus_5281#0      AA--AGTAATATTCTACAAGGAAGCAAAACGTCTTCCAGTAATGAACAAAATACATCACC 475
consensus_5281#1      AAGTAAAAATAGCCTGAGCGGAAAGAAAGG----TAAAGCAGTGTTCAATATACATAGTA 161
                      **  *  ****  **    ****  ***      *  ** * **  *** ******    

consensus_5281#0      GCCACATCAAATTAAAACAGATAATTAACTTCACCGTAGTGTTATAACCAAAAGTATCTA 535
consensus_5281#1      AGAACA-CAAAGAAGAGCAA------CATTTCATTGT-GTGGCATA--CATGTCCCTTTT 211
                         *** ****  * * **        * ****  ** ***  ***  **      * * 

consensus_5281#0      GTGGATTAGCTAGCTAATTTGCTTAACGTATCTTTAAAATAGTGTACACACTTGGGGTAA 595
consensus_5281#1      ACCCATAAGTTTGCTAA------TAACAAAGTGTTGTGACAAAGTCAAAATACAAAGAAT 265
                          ** ** * *****      ****  *   **   * *  **  * *      * * 

consensus_5281#0      TCTGCAAATCCTATGGACAGCTGGCTCAAACACTTGTTTTGTATCGATGATTATCTTTCC 655
consensus_5281#1      TATGTTAGGATTTTAAACTAC--ATATAAGAACTGACAACGAAGTAAT-ATTATCTT--- 319
                      * **  *    * *  **  *      **  ***      * *   ** ********   

consensus_5281#0      AGAACAATCAGAAATTTAACGATATACGAACTCAGTTTTTGGACGTTGAGGTGTTATGAA 715
consensus_5281#1      AAAACAATTTGT--CTTAATAATTTAAGTAGTTAATCTGTATGCGT--ACATTTTAAATA 375
                      * ******  *    ****  ** ** * * * * * * *   ***  *  * ***   *

consensus_5281#0      TGTATTATACCATACACAGTAGTCTTCGGTTGTCAAGTGCTATNCAGCAAGACATTGTTA 775
consensus_5281#1      AGTAGGAAAATA-AGTTACTTTTCTGCAGAAACGAAGAAATGAGCTGCGAGGTACGAAGC 434
                       ***  * *  * *   * *  *** * *     ***   *   * ** **  *      

consensus_5281#0      AAATTTTATATCATACTTCCCCGCTCACTTGTTGCAGATCGTAGCTTCAGATAAAAGCTT 835
consensus_5281#1      AGCTAATACAGTAAGTCAACAAGATGAAACAACCAACACGAAAGAAT--AATAATTGCTG 492
                      *  *  ** *  *      *  * * *        * *    **  *   ****  *** 

consensus_5281#0      GGAAAATTGTTTACAGATTGAAAGAGGTGGGTCCTAACTCATCCTGTTTTACACCTCTGC 895
consensus_5281#1      CGATGCTTTTCTCTGTAGTAAAATTAAGTAAATCTCTTTCAATCTGTAAACAATTTTCCA 552
                       **   ** * *    * * ***          **   ***  ****     *  *    

consensus_5281#0      TTAATGTATGCATATATATATCCTGCATAAAAGTTCGGTTTTCTCTTTAACCTAATATCG 955
consensus_5281#1      AGCTTTTATCTGAAGCTACGATCTGCAACAAGTGAGCGGNGGAAGTATGATATAAAATT- 611
                          * ***    *  **    *****  **      *       * * *  *** **  

consensus_5281#0      CATAGATACTTTGCCCGGTGTTTTCGAGATCCTCGTATTCTGATTTCTCTATTTTTGTGT 1015
consensus_5281#1      ------------------------------------------------------------
                                                                                  

consensus_5281#0      CCATACTGTTCCAACACCTATCTTATGTACAGATAGC 1052
consensus_5281#1      -------------------------------------
                                                           




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)