These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5283#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 531 fasta sequence [GAAACTTCTTCGACACTATGGAGTGAGTGGCTAAGAACATCGTCAACATCATACGGAGTTCATACGACGGACTACACTGCAAAGTCGCGCATGTAGGACAGCCGACAGATGCATTTTAAGTGGGGACCGACGTCAGACAAGAATGATTACTCTCTCGCTTTCTCTTTCTTCTGGTGGTTGACTGGATTATGAAGACCTCAAAATCTCAGGGGAATCACGGAATGCAATGGAAAGTTTGGATGCAACTAGACGACTTAGACTTCACAGATGACCTACCTCTTCTTTCCCATACACAAACAATTGCAGGTCCAGACAAACAGTGTAGCGACAGCCTCTATATCAGTAGGCCTCAACATACACAAAAGAAAAACCAAGATGCTCAAATACAACACGGAGAACACCAATCCAATAATACTTGATGGAGAAACTCTGGAAGAGACGGAAACTCTTACTTACCTGAGCAGCACCGTCGATGAGTGAGGAGGATCTGATGCAGATGTAAAGGCAAGGACTTAAGAAAGGACAACATTT] [+] EMBL CD089821 [GAAACTTCTTCGACACTATGGAGTGAGTGGCTAAGAACATCGTCAACATCATACGGAGTTCATACGACGGACTACACTGCAAAGTCGCGCATGTAGGACAGCCGACAGATGCATTTTAAGTGGGGACCGACGTCAGACAAGAATGATTACTCTCTCGCTTTCTCTTTCTTCTGGTGGTTGACTGGATTATGAAGACCTCAAAATCTCAGGGGAATCACGGAATGCAATGGAAAGTTTGGATGCAACTAGACGACTTAGACTTCACAGATGACCTACCTCTTCTTTCCCATACACAAACAATTGCAGGTCCAGACAAACAGTGTAGCGACAGCCTCTATATCAGTAGGCCTCAACATACACAAAAGAAAAACCAAGATGCTCAAATACAACACGGAGAACACCAATCCAATAATACTTGATGGAGAAACTCTGGAAGAGACGGAAACTCTTACTTACCTGAGCAGCACCGTCGATGAGTGAGGAGGATCTGATGCAGATGTAAAGGCAAGGACTTAAGAAAGGAC ] [-] EMBL CD089722 [ ACGGACTACACTGCAAAGTCGCGCATGTAGGACAGCCGACAGATGCATTTTAAGTGGGGACCGACGTCAGACAAGAATGATTACTCTCTCGCTTTCTCTTTATTCTGGTGGTTGACTGGATTATGAAGACCTCAAAATCTCAGGGGAATCACGGAATGCAATGGAAAGTTTGGATGCAACTAGACGACTTAGACTTCACAGATGACCTACCTCTTCTTTCCCATACACAAACAATTGCAGGTCCAGACAAACAGTGTAGCGACAGCCTCTATATCAGTAGGCCTCAACATACACAAAAGAAAAACCAAGATGCTCAAATACAACACGGAGAACACCAATCCAATAATACTTGATGGAGAAACTCTGGAAGAGACGGAAACTCTTACTTACCTGAGCAGCACCGTCGATGAGTGAGGAGGATCTGATGCAGATGTAAAGGCAAGGACTTAAGAAAGGACAACATTT] consensusID : consensus_5283#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 501 fasta sequence [GGGAGTAGGCGGCGGAAAGAATGAGAAAAACATAACACTCACCTGAAAACAAAATACTATGACAAATGTTTTCATGTAAAATTTTACGTCAATTTCGTAAAATTGAATCATTTCAGTCATTATCTTTAACGTTTAAGACGGTTTTACAATTTAATTAACTCAAATTGGACAGCTTGAATGCAACTAGACGATTTAGACTTCGCAGATCACCTGGAACTTCTATCCTATACACATCAACAAATGCAGGTCAATGCAACCAGTGTAGTAGAAGCCTATACAGCAGTAGGCCTAATCATACACAAGAGAAAAAGCAAAATCCTCAAATACAACACGGAGAACACCAATCCAATTACACTTGATGGAGAAACTGTGTTCACTAAGACTAAAGCAATATAATAATAAATAATTCATTCGAAAATAGCCTCAATAATTCAATGTAACGTCTTCCATTATACAATTGTAGTTGACAGAAGTGTTAATTTATGTTCATGAGAAGAGAAT] [+] EMBL CD201886 [GGGAGTAGGCGGCGGAAAGAATGAGAAAAACATAACACTCACCTGAAAACAAAATACTATGACAAATGTTTTCATGTAAAATTTTACGTCAATTTCGTAAAATTGAATCATTTCAGTCATTATCTTTAACGTTTAAGACGGTTTTACAATTTAATTAACTCAAATTGGACAGCTTGAATGCAACTAGACGATTTAGACTTCGCAGATCACCTGGAACTTCTATCCTATACACATCAACAAATGCAGGTCAATGCAACCAGTGTAGTAGAAGCCTATACAGCAGTAGGCCTAATCATACACAAGAGAAAAAGCAAAATCCTCAAATACAACACGGAGAACACCAATCCAATTACACTTGATGGAGAAACTGTGTTCACTAAGACTAAAGCAATATAATAATAAATAATTCATTCGAAAATAGCCTCAATAATTCAATGTAACGTCTTCCATTATACAATTGTAGTTGACAGAAGTGTTAATTTATGTTCATGAGAAGAGAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5283#0 GAAACTTCTTCGACACTATGGAGTGAGTGGCTAAGAACATCGTCAACATCATACGGAGTT 60 consensus_5283#1 -----------------------------------------GGGAGTAGGCGGCGGAAAG 19 * * * **** consensus_5283#0 CATACGACGGACTACACTGCAAAGTCGCGCATGTAGGACAGCCGACAGATGCATTTTAAG 120 consensus_5283#1 AATGAGAAAAAC-ATAACACTCACCTGAAAACAAAATACTAT-GACAAATGT-TTTCATG 76 ** ** ** * * * * * * * ** **** *** *** * * consensus_5283#0 TGGGGACCGACGTCAGACAAGAATGATTACTCTCTCGCTTTCTCTTTCTTCTGGTGGTTG 180 consensus_5283#1 TAAAATTTTACGTCAATTTCGTAAAATTGAATCATTTCAGTCATTATCTT--------TA 128 * ****** * * *** * * ** * **** * consensus_5283#0 ACTGGATTATGAAGACCTCAAAATCTCAGGGGAATCACGGAATGCAATGGAAAGTTTGGA 240 consensus_5283#1 AC--GTTTAAGACGGTTTTACAATTT-----AATTAACTCAA---ATTGGACAGCTTGAA 178 ** * *** ** * * * *** * * * ** ** * **** ** *** * consensus_5283#0 TGCAACTAGACGACTTAGACTTCACAGATGACCTACCTCTTCTTTCCCATACACA--AAC 298 consensus_5283#1 TGCAACTAGACGATTTAGACTTCGCAGATCACCTGGAACTTCTATCCTATACACATCAAC 238 ************* ********* ***** **** ***** *** ******* *** consensus_5283#0 AATTGCAGGTCCAGACAAACAGTGTAGCGACAGCCTCTATATCAGTAGGCCTCAACATAC 358 consensus_5283#1 AAATGCAGGTCAATGCAACCAGTGTAGTAGAAGCCTATACAGCAGTAGGCCTAATCATAC 298 ** ******** * *** ******** ***** ** * ********** * ***** consensus_5283#0 ACAAAAGAAAAACCAAGATGCTCAAATACAACACGGAGAACACCAATCCAATAATACTTG 418 consensus_5283#1 ACAAGAGAAAAAGCAAAATCCTCAAATACAACACGGAGAACACCAATCCAATTACACTTG 358 **** ******* *** ** ******************************** * ***** consensus_5283#0 ATGGAGAAACTCTG---GAAGAGACGGAAACTCT-----------TACTTACCTGAGCAG 464 consensus_5283#1 ATGGAGAAACTGTGTTCACTAAGACTAAAGCAATATAATAATAAATAATTCATTCGAAAA 418 *********** ** **** ** * * ** ** * * consensus_5283#0 CACCGTCGATGAGTGAGGAGGATCTGATGCAGATGTAAAGGCAAGGACTTAAGAAAGGAC 524 consensus_5283#1 TAGCCTCAATAATTCAATGTAACGTCTTCCAT-TATACAATTGTAGTTGACAGAAGTGTT 477 * * ** ** * * * * * * ** * ** * * **** * consensus_5283#0 AACATTT----------------- 531 consensus_5283#1 AATTTATGTTCATGAGAAGAGAAT 501 ** * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||