These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_529#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 564 fasta sequence [CATAATACTTATACTCTTACTACTTCTACCAATATGGGATTTGAATCGACAACTTCATCTCTGTGCTAATGTGGTATGGCAACTCGAACTGATGCACGTACGTACGAAGTTCTACGCTGTAACTGACTGACTGACTGACTCTCGGCCGTACCAGGGCATTTGGAGATCAAACAATATAATGTATATTAAGACCTATAATGGTAAAAACGATCCCAAAATCTGACTGTTGTTGGGTTAGCGCGATCAAAAAACTAGAGAATGAACGAAAATTCCATTCCCAAAGAAAAAAAATACTGAACAGTAATACACCTAAATCCAAAACCATTTTAATATGCATAACTACTTATTTTTGGAGTAGATTACATACGATATGAAAACCATATGAAAATATTTTAAAATGACTACGGTTTTTTAATGTTATGTAGTAGGAAATTAATTCGTAGAATTNNAGTAGTCATCTTGGACGCATNCAACACTACATTTAATTGTGNTGGAACAGTTTACTTATTTTTTGTGTCCTCTGNAGAATNCTACTAGAAATAAATCATCTTTCTACATATTTGT] [+] EMBL CD158103 [CATAATACTTATACTCTTACTACTTCTACCAATATGGGATTTGAATCGACAACTTCATCTCTGTGCTAATGTGGTATGGCAACTCGAACTGATGCACGTACGTACGAAGTTCTACGCTGTAACTGACTGACTGACTGACTCTCGGCCGTACCAGGGCATTTGGAGATCAAACAATATAATGTATATTAAGACCTATAATGGTAAAAACGATCCCAAAATCTGACTGTTGTTGGGTTAGCGCGATCAAAAAACTAGAGAATGAACGAAAATTCCATTCCCAAAGAAAAAAAATACTGAACAGTAATACACCTAAATCCAAAACCATTTTAATATGCATAACTACTTATTTTTGGAGTAGATTACATACGATATGAAAACCATATGAAAATATTTTAAAATGACTACGGTTTTTTAATGTTATGTAGTAGGAAATTAATTCGTAGAATTNNAGTAGTCATCTTGGACGCATNCAACACTACATTTAATTGTGNTGGAACAGTTTACTTATTTTTTGTGTCCTCTGNAGAATNCTACTAGAAATAAATCATCTTTCTACATATTTGT] consensusID : consensus_529#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 555 fasta sequence [AAACGTATTTTAATTTCAACTAAAAATTATGTACAATAATCAATACTTGCACCATAAAATATTCAATAAAAACAAATGAAAATATGTGCAAATTAGTTCAAAATATTAAAAAAAAACGATCACAAACTACAAATAATTGTAAATATTCACGTACTAATTCTGTAATTAGATGAAATCTGTACATTTTACAAATAGATTTACACTCAGATAATATGCGACATTCAAGTTCAGTACTTGTCAACGTGGCACAAACCCATGAAGTCGCTGAAGTGGACTGGGCCGTGTTGGTAGGTGTAGACTACCTGGTTGGGATTCGCGAGATGATAGCAACCGATGGTTAGAGACCTTGAATGACATGGCTCAAAATCATTTGCAATGGCGAAGGTGCATCCACTCCTTGTGTTCTACCAAATTCTAATCTTTTGAATTCTCCAAATTTATTTCACTGTATTATACTCCTTCAATAACATCTTCAAAACCCTAATCTTTCGGATTACTGCTTATACTCTTAATACTTCTACCACTATGGGATTTGAATCGACAACTGAATCTCTG] [+] EMBL CD076790 [AAACGTATTTTAATTTCAACTAAAAATTATGTACAATAATCAATACTTGCACCATAAAATATTCAATAAAAACAAATGAAAATATGTGCAAATTAGTTCAAAATATTAAAAAAAAACGATCACAAACTACAAATAATTGTAAATATTCACGTACTAATTCTGTAATTAGATGAAATCTGTACATTTTACAAATAGATTTACACTCAGATAATATGCGACATTCAAGTTCAGTACTTGTCAACGTGGCACAAACCCATGAAGTCGCTGAAGTGGACTGGGCCGTGTTGGTAGGTGTAGACTACCTGGTTGGGATTCGCGAGATGATAGCAACCGATGGTTAGAGACCTTGAATGACATGGCTCAAAATCATTTGCAATGGCGAAGGTGCATCCACTCCTTGTGTTCTACCAAATTCTAATCTTTTGAATTCTCCAAATTTATTTCACTGTATTATACTCCTTCAATAACATCTTCAAAACCCTAATCTTTCGGATTACTGCTTATACTCTTAATACTTCTACCACTATGGGATTTGAATCGACAACTGAATCTCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_529#0 CATAATACTTATACTCTTACTACTTCTACCAATATGGGATTTGAATCGACAACTTCATCT 60 consensus_529#1 ------AAACGTATTTTAATTTCAACTAAAAATTATGTACAATAATCAATACTTGCA-CC 53 * ** * * * * * *** *** * * **** * * * ** * consensus_529#0 CTGTGCTAATGTGGTATGGCAACTCGAACTG-ATGCACGTACGTACGAAGTTCTACGCTG 119 consensus_529#1 ATAAAATATTCAATAAAAACAAATGAAAATATGTGCAAATTAGTTCAAAATATTAAAAAA 113 * ** * * *** * ** * **** * ** * ** * ** consensus_529#0 TAACTGACTGACTGACTGACTCTCGGCCGTACCAGGGCATTTGGAGATCAAACAATATAA 179 consensus_529#1 AAACGATC--ACAAACT-ACAAATAATTGTAAATATTCACGTACTAATTCTGTAATTAGA 170 *** * ** *** ** *** ** * ** *** * consensus_529#0 TGTATATTAAGACCTATAATGGTAAAAACGATCCCAAAATCTGACTGTTGTTGGGTTAGC 239 consensus_529#1 TGAAATCTGTACATTTTACAAATAGATTTACACTCAGATAATATGCGACATTCAAGTTCA 230 ** * * * ** ** * * ** * * * ** * consensus_529#0 GCGATCAAAAAACTAGAGAATGAACGAAAATTCCATTCCCAAAGAAAAAAAATACTGAAC 299 consensus_529#1 GTACTTGTCAACGTGGCACAAACCCATGAAGTCGCTGAAGTGGACTGGGCCGTGTTGGTA 290 * * ** * * * * ** ** * * ** consensus_529#0 AGTA-ATACACCTAAATCCAAAACCATTTTAATATGCATAACTACTTATTTTTGGAGTAG 358 consensus_529#1 GGTGTAGACTACCTGGTTGGGATTCGC---GAGATG-ATAGCAACCGATGGTTAGAG-AC 345 ** * ** * * * * * *** *** * ** ** ** *** * consensus_529#0 ATTACATACGATA--TGAAAACCATATGAAAATATTTTAAAATGACTACGGTTTTTTAAT 416 consensus_529#1 CTTGAATGACATGGCTCAAAATCATTTGCAATGGC--GAAGGTGCATCCACTCCTTGTGT 403 ** ** ** * **** *** ** ** ** ** * * * ** * consensus_529#0 GTTATGTAGTAGGAAATT----AATTCGTAGAATTNNAGTAGTCATCTTGGACGCATNCA 472 consensus_529#1 TCTACCAAATTCTAATCTTTTGAATTCTCCAAATTTATTTCACTGTATTATACTCCTTCA 463 ** * * ** * ***** **** * * ** ** * * ** consensus_529#0 ACACTACATTTAA--TTGTGNTGGAACAGTTTACTTATTTTTTGTGTCCTCTGNAGAATN 530 consensus_529#1 ATAACATCTTCAAAACCCTAATCTTTCGGATTACTGCTTATACTCTTAATACTTCTACCA 523 * * * ** ** * * * * ***** ** * * * * consensus_529#0 CTACTAGAAATAAATCATCTTTCTACATATTTGT 564 consensus_529#1 CTATGGGATTTGAATCGACAA-CTGAATCTCTG- 555 *** ** * **** * ** ** * ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||