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Schistosoma mansoni
cluster # 5294 cluster # 5294       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5294#0 length = 543 sequences # 1  
consensus_5294#1 length = 408 sequences # 2  

consensusID : consensus_5294#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 543
fasta sequence
                              [AAATTGCTCGCCGGCAGCCTGACCATGACTTTTTTTGTTTACGTTTTCGTCAACATCGGTATGGTCAGTGGCCTGTTGCCGGTGGTTGGGGTGCCGTTGCCGTTCATTAGCTACGGCGGAACTTCGCTGGTGACATTGATGTCAGCGTTTGGGGTTTTGATGTCGATTCACACGCATCGCAAGTGGATCGCGCAGGTTTGAATAAGGTGAAGATGTCAATGCAAGTAATGCGCGGCTGGGCGACTCGGCACGCGTCCTGGATGGGCCTGATTGGGCTGCTGGGCGCGACGCAAGAGGTGCAGGCCGGTGACTACGATGGTTCACCCCAGGTCGCCGAATTTGTCGGTGAAATGACCCGCGACTACGGTTTTGCCGGTGAACAACTGATGGGCGTGTTCCGTGAAGCCCAGCGCAAGCAGGCGATCCTCGACGCGATCTCGCGTCCCGCCGAGCGCGTCAAACAGTGGAAAGACTACCGCCCGATGTTCCTCACCGACGCCCGTGTGGCGCGGGGCGTGGACTTCTGGCGCCANCACGAAGCGG]

[+] EMBL CD073212             [AAATTGCTCGCCGGCAGCCTGACCATGACTTTTTTTGTTTACGTTTTCGTCAACATCGGTATGGTCAGTGGCCTGTTGCCGGTGGTTGGGGTGCCGTTGCCGTTCATTAGCTACGGCGGAACTTCGCTGGTGACATTGATGTCAGCGTTTGGGGTTTTGATGTCGATTCACACGCATCGCAAGTGGATCGCGCAGGTTTGAATAAGGTGAAGATGTCAATGCAAGTAATGCGCGGCTGGGCGACTCGGCACGCGTCCTGGATGGGCCTGATTGGGCTGCTGGGCGCGACGCAAGAGGTGCAGGCCGGTGACTACGATGGTTCACCCCAGGTCGCCGAATTTGTCGGTGAAATGACCCGCGACTACGGTTTTGCCGGTGAACAACTGATGGGCGTGTTCCGTGAAGCCCAGCGCAAGCAGGCGATCCTCGACGCGATCTCGCGTCCCGCCGAGCGCGTCAAACAGTGGAAAGACTACCGCCCGATGTTCCTCACCGACGCCCGTGTGGCGCGGGGCGTGGACTTCTGGCGCCANCACGAAGCGG]


>consensus_5294#0 AAATTGCTCGCCGGCAGCCTGACCATGACTTTTTTTGTTTACGTTTTCGTCAACATCGGT ATGGTCAGTGGCCTGTTGCCGGTGGTTGGGGTGCCGTTGCCGTTCATTAGCTACGGCGGA ACTTCGCTGGTGACATTGATGTCAGCGTTTGGGGTTTTGATGTCGATTCACACGCATCGC AAGTGGATCGCGCAGGTTTGAATAAGGTGAAGATGTCAATGCAAGTAATGCGCGGCTGGG CGACTCGGCACGCGTCCTGGATGGGCCTGATTGGGCTGCTGGGCGCGACGCAAGAGGTGC AGGCCGGTGACTACGATGGTTCACCCCAGGTCGCCGAATTTGTCGGTGAAATGACCCGCG ACTACGGTTTTGCCGGTGAACAACTGATGGGCGTGTTCCGTGAAGCCCAGCGCAAGCAGG CGATCCTCGACGCGATCTCGCGTCCCGCCGAGCGCGTCAAACAGTGGAAAGACTACCGCC CGATGTTCCTCACCGACGCCCGTGTGGCGCGGGGCGTGGACTTCTGGCGCCANCACGAAG CGG



consensusID : consensus_5294#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 408
fasta sequence
                              [CTGATCGGGCGCGGGCTGGTGATTACCGCCCAGGCCCAGACGCTGTTCGGCAAACTGCTGGCCGGCAGCCTGACCATGACGTTTTTTGTGTATGTTTTCGTCAACATCGGTATGGTCAGCGGTCTGCTGCCGGTGGTGGGGGTGCCGTTGCCATTCATTAGCTATGGCGGAACTTCGCTGGTGACACTGCTGTCAGCGTTTGGGGTTTTGATGTCGATCCATACCCACCGCAAGTGGATCGCACAGGTTTGAGCAAGGTGAACAATTCAATGCAAGTATTGCGCGGTTGGGCGGCTCGGTGTGCGCCCTGGATAGGCCTGGTCGGCTGTCTGGGGGCAGGAACGGGCGCGCTGGCCGGTGACTACGAAGGTTCGCCGCAAGTGGCCCAGTTCGTCGCGGAAATGACCC]

[+] EMBL CD163270             [CTGATCGGGCGCGGGCTGGTGATTACCGCCCAGGCCCAGACGCTGTTCGGCAAACTGCTGGCCGGCAGCCTGACCATGACGTTTTTTGTGTATGTTTTCGTCAACATCGGTATGGTCAGCGGTCTGCTGCCGGTGGTGGGGGTGCCGTTGCCATTCATTAGCTATGGCGGAACTTCGCTGGTGACACTGCTGTCAGCGTTTGGGGTTTTGATGTCGATCCATACCCACCGCAAGTGGATCGCACAGGTTTGAGCAAGGTGAACAATTCAATGCAAGTATTGCGCGGTTGGGCGGCTCGGTGTGCGCCCTGGATAGGCCTGGTCGGCTGTCTGGGGGCAGGAACGGGCGCGCTGGCCGGTGACTACGAAGGTTCGCCGCAAGTGGCCCAGTTCGTCGCGGAAATGACC ]
[-] EMBL CD163451             [  GATCGGGCGCGGGCTGGTGATTACCGCCCAGGCCCAGACGCTGTTCGGCAAACTGCTGGCCGGCAGCCTGACCATGACGTTTTTTGTGTATGTTTTCGTCAACATCGGTATGGTCAGCGGTCTGCTGCCGGTGGTGGGGGTGCCGTTGCCATTCATTAGCTATGGCGGAACTTCGCTGGTGACACTGCTGTCAGCGTTTGGGGTTTTGATGTCGATCCATACCCACCGCAAGTGGATCGCACAGGTTTGAGCAAGGTGAACAATTCAATGCAAGTATTGCGCGGTTGGGCGGCTCGGTGTGCGCCCTGGATAGGCCTGGTCGGCTGTCTGGGGGCAGGAACGGGCGCGCTGGCCGGTGACTACGAAGGTTCGCCGCAAGTGGCCCAGTTCGTCGCGGAAATGACCC]


>consensus_5294#1 CTGATCGGGCGCGGGCTGGTGATTACCGCCCAGGCCCAGACGCTGTTCGGCAAACTGCTG GCCGGCAGCCTGACCATGACGTTTTTTGTGTATGTTTTCGTCAACATCGGTATGGTCAGC GGTCTGCTGCCGGTGGTGGGGGTGCCGTTGCCATTCATTAGCTATGGCGGAACTTCGCTG GTGACACTGCTGTCAGCGTTTGGGGTTTTGATGTCGATCCATACCCACCGCAAGTGGATC GCACAGGTTTGAGCAAGGTGAACAATTCAATGCAAGTATTGCGCGGTTGGGCGGCTCGGT GTGCGCCCTGGATAGGCCTGGTCGGCTGTCTGGGGGCAGGAACGGGCGCGCTGGCCGGTG ACTACGAAGGTTCGCCGCAAGTGGCCCAGTTCGTCGCGGAAATGACCC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5294#0      ---------------------------------------------------AAATTGCTC 9
consensus_5294#1      CTGATCGGGCGCGGGCTGGTGATTACCGCCCAGGCCCAGACGCTGTTCGGCAAACTGCTG 60
                                                                         *** **** 

consensus_5294#0      GCCGGCAGCCTGACCATGACTTTTTTTGTTTACGTTTTCGTCAACATCGGTATGGTCAGT 69
consensus_5294#1      GCCGGCAGCCTGACCATGACGTTTTTTGTGTATGTTTTCGTCAACATCGGTATGGTCAGC 120
                      ******************** ******** ** ************************** 

consensus_5294#0      GGCCTGTTGCCGGTGGTTGGGGTGCCGTTGCCGTTCATTAGCTACGGCGGAACTTCGCTG 129
consensus_5294#1      GGTCTGCTGCCGGTGGTGGGGGTGCCGTTGCCATTCATTAGCTATGGCGGAACTTCGCTG 180
                      ** *** ********** ************** *********** ***************

consensus_5294#0      GTGACATTGATGTCAGCGTTTGGGGTTTTGATGTCGATTCACACGCATCGCAAGTGGATC 189
consensus_5294#1      GTGACACTGCTGTCAGCGTTTGGGGTTTTGATGTCGATCCATACCCACCGCAAGTGGATC 240
                      ****** ** **************************** ** ** ** ************

consensus_5294#0      GCGCAGGTTTGAATAAGGTGAAGATGTCAATGCAAGTAATGCGCGGCTGGGCGACTCGGC 249
consensus_5294#1      GCACAGGTTTGAGCAAGGTGAACAATTCAATGCAAGTATTGCGCGGTTGGGCGGCTCGGT 300
                      ** *********  ******** *  ************ ******* ****** ***** 

consensus_5294#0      ACGCGTCCTGGATGGGCCTGATTGGGCTGCTGGGCGCGACGCAAGAGGTGCAGGCCGGTG 309
consensus_5294#1      GTGCGCCCTGGATAGGCCTGGTCGGCTGTCTGGGGGCAGGAACGGGCGCGCTGGCCGGTG 360
                        *** ******* ****** * **    ***** **       *  * ** ********

consensus_5294#0      ACTACGATGGTTCACCCCAGGTCGCCGAATTTGTCGGTGAAATGACCCGCGACTACGGTT 369
consensus_5294#1      ACTACGAAGGTTCGCCGCAAGTGGCCCAGTTCGTCGCGGAAATGACCC------------ 408
                      ******* ***** ** ** ** *** * ** ****  **********            

consensus_5294#0      TTGCCGGTGAACAACTGATGGGCGTGTTCCGTGAAGCCCAGCGCAAGCAGGCGATCCTCG 429
consensus_5294#1      ------------------------------------------------------------
                                                                                  

consensus_5294#0      ACGCGATCTCGCGTCCCGCCGAGCGCGTCAAACAGTGGAAAGACTACCGCCCGATGTTCC 489
consensus_5294#1      ------------------------------------------------------------
                                                                                  

consensus_5294#0      TCACCGACGCCCGTGTGGCGCGGGGCGTGGACTTCTGGCGCCANCACGAAGCGG 543
consensus_5294#1      ------------------------------------------------------
                                                                            




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)