These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5294#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 543 fasta sequence [AAATTGCTCGCCGGCAGCCTGACCATGACTTTTTTTGTTTACGTTTTCGTCAACATCGGTATGGTCAGTGGCCTGTTGCCGGTGGTTGGGGTGCCGTTGCCGTTCATTAGCTACGGCGGAACTTCGCTGGTGACATTGATGTCAGCGTTTGGGGTTTTGATGTCGATTCACACGCATCGCAAGTGGATCGCGCAGGTTTGAATAAGGTGAAGATGTCAATGCAAGTAATGCGCGGCTGGGCGACTCGGCACGCGTCCTGGATGGGCCTGATTGGGCTGCTGGGCGCGACGCAAGAGGTGCAGGCCGGTGACTACGATGGTTCACCCCAGGTCGCCGAATTTGTCGGTGAAATGACCCGCGACTACGGTTTTGCCGGTGAACAACTGATGGGCGTGTTCCGTGAAGCCCAGCGCAAGCAGGCGATCCTCGACGCGATCTCGCGTCCCGCCGAGCGCGTCAAACAGTGGAAAGACTACCGCCCGATGTTCCTCACCGACGCCCGTGTGGCGCGGGGCGTGGACTTCTGGCGCCANCACGAAGCGG] [+] EMBL CD073212 [AAATTGCTCGCCGGCAGCCTGACCATGACTTTTTTTGTTTACGTTTTCGTCAACATCGGTATGGTCAGTGGCCTGTTGCCGGTGGTTGGGGTGCCGTTGCCGTTCATTAGCTACGGCGGAACTTCGCTGGTGACATTGATGTCAGCGTTTGGGGTTTTGATGTCGATTCACACGCATCGCAAGTGGATCGCGCAGGTTTGAATAAGGTGAAGATGTCAATGCAAGTAATGCGCGGCTGGGCGACTCGGCACGCGTCCTGGATGGGCCTGATTGGGCTGCTGGGCGCGACGCAAGAGGTGCAGGCCGGTGACTACGATGGTTCACCCCAGGTCGCCGAATTTGTCGGTGAAATGACCCGCGACTACGGTTTTGCCGGTGAACAACTGATGGGCGTGTTCCGTGAAGCCCAGCGCAAGCAGGCGATCCTCGACGCGATCTCGCGTCCCGCCGAGCGCGTCAAACAGTGGAAAGACTACCGCCCGATGTTCCTCACCGACGCCCGTGTGGCGCGGGGCGTGGACTTCTGGCGCCANCACGAAGCGG] consensusID : consensus_5294#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 408 fasta sequence [CTGATCGGGCGCGGGCTGGTGATTACCGCCCAGGCCCAGACGCTGTTCGGCAAACTGCTGGCCGGCAGCCTGACCATGACGTTTTTTGTGTATGTTTTCGTCAACATCGGTATGGTCAGCGGTCTGCTGCCGGTGGTGGGGGTGCCGTTGCCATTCATTAGCTATGGCGGAACTTCGCTGGTGACACTGCTGTCAGCGTTTGGGGTTTTGATGTCGATCCATACCCACCGCAAGTGGATCGCACAGGTTTGAGCAAGGTGAACAATTCAATGCAAGTATTGCGCGGTTGGGCGGCTCGGTGTGCGCCCTGGATAGGCCTGGTCGGCTGTCTGGGGGCAGGAACGGGCGCGCTGGCCGGTGACTACGAAGGTTCGCCGCAAGTGGCCCAGTTCGTCGCGGAAATGACCC] [+] EMBL CD163270 [CTGATCGGGCGCGGGCTGGTGATTACCGCCCAGGCCCAGACGCTGTTCGGCAAACTGCTGGCCGGCAGCCTGACCATGACGTTTTTTGTGTATGTTTTCGTCAACATCGGTATGGTCAGCGGTCTGCTGCCGGTGGTGGGGGTGCCGTTGCCATTCATTAGCTATGGCGGAACTTCGCTGGTGACACTGCTGTCAGCGTTTGGGGTTTTGATGTCGATCCATACCCACCGCAAGTGGATCGCACAGGTTTGAGCAAGGTGAACAATTCAATGCAAGTATTGCGCGGTTGGGCGGCTCGGTGTGCGCCCTGGATAGGCCTGGTCGGCTGTCTGGGGGCAGGAACGGGCGCGCTGGCCGGTGACTACGAAGGTTCGCCGCAAGTGGCCCAGTTCGTCGCGGAAATGACC ] [-] EMBL CD163451 [ GATCGGGCGCGGGCTGGTGATTACCGCCCAGGCCCAGACGCTGTTCGGCAAACTGCTGGCCGGCAGCCTGACCATGACGTTTTTTGTGTATGTTTTCGTCAACATCGGTATGGTCAGCGGTCTGCTGCCGGTGGTGGGGGTGCCGTTGCCATTCATTAGCTATGGCGGAACTTCGCTGGTGACACTGCTGTCAGCGTTTGGGGTTTTGATGTCGATCCATACCCACCGCAAGTGGATCGCACAGGTTTGAGCAAGGTGAACAATTCAATGCAAGTATTGCGCGGTTGGGCGGCTCGGTGTGCGCCCTGGATAGGCCTGGTCGGCTGTCTGGGGGCAGGAACGGGCGCGCTGGCCGGTGACTACGAAGGTTCGCCGCAAGTGGCCCAGTTCGTCGCGGAAATGACCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5294#0 ---------------------------------------------------AAATTGCTC 9 consensus_5294#1 CTGATCGGGCGCGGGCTGGTGATTACCGCCCAGGCCCAGACGCTGTTCGGCAAACTGCTG 60 *** **** consensus_5294#0 GCCGGCAGCCTGACCATGACTTTTTTTGTTTACGTTTTCGTCAACATCGGTATGGTCAGT 69 consensus_5294#1 GCCGGCAGCCTGACCATGACGTTTTTTGTGTATGTTTTCGTCAACATCGGTATGGTCAGC 120 ******************** ******** ** ************************** consensus_5294#0 GGCCTGTTGCCGGTGGTTGGGGTGCCGTTGCCGTTCATTAGCTACGGCGGAACTTCGCTG 129 consensus_5294#1 GGTCTGCTGCCGGTGGTGGGGGTGCCGTTGCCATTCATTAGCTATGGCGGAACTTCGCTG 180 ** *** ********** ************** *********** *************** consensus_5294#0 GTGACATTGATGTCAGCGTTTGGGGTTTTGATGTCGATTCACACGCATCGCAAGTGGATC 189 consensus_5294#1 GTGACACTGCTGTCAGCGTTTGGGGTTTTGATGTCGATCCATACCCACCGCAAGTGGATC 240 ****** ** **************************** ** ** ** ************ consensus_5294#0 GCGCAGGTTTGAATAAGGTGAAGATGTCAATGCAAGTAATGCGCGGCTGGGCGACTCGGC 249 consensus_5294#1 GCACAGGTTTGAGCAAGGTGAACAATTCAATGCAAGTATTGCGCGGTTGGGCGGCTCGGT 300 ** ********* ******** * ************ ******* ****** ***** consensus_5294#0 ACGCGTCCTGGATGGGCCTGATTGGGCTGCTGGGCGCGACGCAAGAGGTGCAGGCCGGTG 309 consensus_5294#1 GTGCGCCCTGGATAGGCCTGGTCGGCTGTCTGGGGGCAGGAACGGGCGCGCTGGCCGGTG 360 *** ******* ****** * ** ***** ** * * ** ******** consensus_5294#0 ACTACGATGGTTCACCCCAGGTCGCCGAATTTGTCGGTGAAATGACCCGCGACTACGGTT 369 consensus_5294#1 ACTACGAAGGTTCGCCGCAAGTGGCCCAGTTCGTCGCGGAAATGACCC------------ 408 ******* ***** ** ** ** *** * ** **** ********** consensus_5294#0 TTGCCGGTGAACAACTGATGGGCGTGTTCCGTGAAGCCCAGCGCAAGCAGGCGATCCTCG 429 consensus_5294#1 ------------------------------------------------------------ consensus_5294#0 ACGCGATCTCGCGTCCCGCCGAGCGCGTCAAACAGTGGAAAGACTACCGCCCGATGTTCC 489 consensus_5294#1 ------------------------------------------------------------ consensus_5294#0 TCACCGACGCCCGTGTGGCGCGGGGCGTGGACTTCTGGCGCCANCACGAAGCGG 543 consensus_5294#1 ------------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||