These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_53#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 334 fasta sequence [TTTTTTTTTTTGCACTGAGAACTAATTTTATTCTTGATACTACTCATGGAATCAATATAAATGAATAATTAATACTTGAGAAACATTTTCCATACAGGATATTAAATTAGTTTAATATTTCACATCATGAAATGTTTATGTTTCAAAGTACTAACAAAAGTATGGCATTTTTAAGAATACAAGATAATGGTTAAGAAATAATGGTCAATGGGGCCGGCTCCATAGTTAGTTAATTTCGGATAACCAAGAACTATAGCCAGTAGGGCCATGCAACCATGCGTTCCATACTCCGCTTGACGGAAGTAAGCTGCTCGAGGGTCAGATTCAAATTTGG] [+] EMBL AI395696 [TTTTTTTTTTTGCACTGAGAACTAATTTTATTCTTGATACTACTCATGGAATCAATATAAATGAATAATTAATACTTGAGAAACATTTTCCATACAGGATATTAAATTAGTTTAATATTTCACATCATGAAATGTTTATGTTTCAAAGTACTAACAAAAGTATGGCATTTTTAAGAATACAAGATAATGGTTAAGAAATAATGGTCAATGGGGCCGGCTCCATAGTTAGTTAATTTCGGATAACCAAGAACTATAGCCAGTAGGGCCATGCAACCATGCGTTCCATACTCCGCTTGACGGAAGTAAGCTGCTCGAGGGTCAGATTCAAATTTGG] consensusID : consensus_53#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 315 fasta sequence [TTTTTTTTTTCACTGAGAACTAATTTTATTCTTGATACTACTCATGGAATCAATATAAAAAAATAATTAATACTTGAGAAACATTTTCCATACAGAATATTAAATTAGTTTAATATTTCACATCATGAAATGTTTATGTATCAAAGTAATAAACAAAATAATGACATTTTTAATATACCAAAATAATGTTTAAGAAATATTGTTCATTGTGACTGAATCATAATTAGTTCATTTCTGATTAGCCAGCACTATAGCCAGGAGGGCCATGCGAACATGCGTTCAAACTCCGCTTGACGGAAGTAACCGGCTCAAGGG] [+] EMBL AI394931 [TTTTTTTTTTCACTGAGAACTAATTTTATTCTTGATACTACTCATGGAATCAATATAAAAAAATAATTAATACTTGAGAAACATTTTCCATACAGAATATTAAATTAGTTTAATATTTCACATCATGAAATGTTTATGTATCAAAGTAATAAACAAAATAATGACATTTTTAATATACCAAAATAATGTTTAAGAAATATTGTTCATTGTGACTGAATCATAATTAGTTCATTTCTGATTAGCCAGCACTATAGCCAGGAGGGCCATGCGAACATGCGTTCAAACTCCGCTTGACGGAAGTAACCGGCTCAAGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_53#0 TTTTTTTTTTTGCACTGAGAACTAATTTTATTCTTGATACTACTCATGGAATCAATATAA 60 consensus_53#1 --TTTTTTTTTTCACTGAGAACTAATTTTATTCTTGATACTACTCATGGAATCAATATAA 58 ********* ************************************************ consensus_53#0 ATGAATAATTAATACTTGAGAAACATTTTCCATACAGGATATTAAATTAGTTTAATATTT 120 consensus_53#1 AAAAATAATTAATACTTGAGAAACATTTTCCATACAGAATATTAAATTAGTTTAATATTT 118 * ********************************** ********************** consensus_53#0 CACATCATGAAATGTTTATGTTTCAAAGTACTAA-CAAAAGTATGGCATTTTTAAGAATA 179 consensus_53#1 CACATCATGAAATGTTTATGTATCAAAGTAATAAACAAAATAATGACATTTTTAATATAC 178 ********************* ******** *** ***** *** ********* * consensus_53#0 CAAGATAATGGTTAAGAAATAATGGTCAATGGGGCCGGCTCCATAGTTAGTTAATTTCGG 239 consensus_53#1 CAAAATAATGTTTAAGAAATATTGTTCATTGTGACTGAATC-ATAATTAGTTCATTTCTG 237 *** ****** ********** ** *** ** * * * ** *** ****** ***** * consensus_53#0 ATAACCAAGAACTATAGCCAGTAGGGCCATGCAACCATGCGTTCCATACTCCGCTTGACG 299 consensus_53#1 ATTAGCCAGCACTATAGCCAGGAGGGCCATGCGAACATGCGTTC-AAACTCCGCTTGACG 296 ** * * ** *********** ********** * ********* * ************* consensus_53#0 GAAGTAAGCTGCTCGAGGGTCAGATTCAAATTTGG 334 consensus_53#1 GAAGTAACCGGCTCAAGGG---------------- 315 ******* * **** **** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||