cluster # 5301

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Schistosoma mansoni
cluster # 5301 cluster # 5301 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5301#0 length = 375 sequences # 2

consensus_5301#1 length = 371 sequences # 1

consensusID : consensus_5301#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 375
fasta sequence

                              [AATTTCGATCAGACTGGCTGTTTGGCTAACATCTATTACTTTAGCGTAAGATCACATCATTATTCTCTTAAATGAGCACAGAACCATCTCCTTAACATTTAAAGGAAATTTGATAGGAAGAAAATATTTTTGCATAGATTCATCAGTTTTTTTCATTAGAACTATGATTAATTTCACTAGACATAACAGGGTTAGATGATTCATCTTCTCCAGAATATAGAGATAAGCAACTGTTATTTAGGTTAACATCATTTTGTTGATTACTTCCATTTAATTTTATTGACAAATCTGATGAGAAAGACAATTATCAAGCCTCATTTCTCTGTTGTGATGTAAATCGGTTGATCAGTGCAAAGGGCGAATTCGTTTAAACCT]

[+] EMBL CD085469             [AATTTCGATCAGACTGGCTGTTTGGCTAACATCTATTACTTTAGCGTAAGATCACATCATTATTCTCTTAAATGAGCACAGAACCATCTCCTTAACATTTAAAGGAAATTTGATAGGAAGAAAATATTTTTGCATAGATTCATCAGTTTTTTTCATTAGAACTATGATTAATTTCACTAGACATAACAGGGTTAGATGATTCATCTTCTCCAGAATATAGAGATAAGCAACTGTTATTTAGGTTAACATCATTTTGTTGATTACTTCCATTTAATTTTATTGACAAATCTGATGAGAAAGACAATTATCAAGCCTCATTTCTCTGTTGTGATGTAAATCGGTTGATCAGTGCAAAGGGCGAATTCGTTTAAACCT]
[+] EMBL CD085440             [AATTT GATCAG CT GCT TTTGG TAA ATCTA TAC  TAGC TAA ATCA ATCA TATT T TTAAAT AGCACAG ACCAT TCCTTAACATTTAAAGGAAATTTGATAGGAAGAAAATATTTTTGCATAGATTCATCAGTTTTTTTCATTAGAACTATGATTAATTTCACTAGACATAACAGGGTTAGATGATTCATCTTCTCCAGAATATAGAGATAAGCAACTGTTATTTAGGTTAACATCATTTTGTTGATTACTTCCATTTAATTTTATTGACAAATCTGATGAGAAAGACAATTATCAAGCCTCATTTCTCTGTTGTGATGTAAATCGGTTGATCAGTGCAAAGGGCGAATTCGTTTAAACCT]




>consensus_5301#0
AATTTCGATCAGACTGGCTGTTTGGCTAACATCTATTACTTTAGCGTAAGATCACATCAT
TATTCTCTTAAATGAGCACAGAACCATCTCCTTAACATTTAAAGGAAATTTGATAGGAAG
AAAATATTTTTGCATAGATTCATCAGTTTTTTTCATTAGAACTATGATTAATTTCACTAG
ACATAACAGGGTTAGATGATTCATCTTCTCCAGAATATAGAGATAAGCAACTGTTATTTA
GGTTAACATCATTTTGTTGATTACTTCCATTTAATTTTATTGACAAATCTGATGAGAAAG
ACAATTATCAAGCCTCATTTCTCTGTTGTGATGTAAATCGGTTGATCAGTGCAAAGGGCG
AATTCGTTTAAACCT

consensusID : consensus_5301#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 371
fasta sequence

                              [AATTTGATCAGCTGCTTTTGGTAAATCTATACTAGCTAAATCAATCATATTTTTAAATAGCACAGACCATTCCTTAACATTTAAAGGAAATTTGATAGGAAGAAAATATTTTTGCATAGATTCATCAGTTTTTTTCATTAGAACTATGATTAATTTCACCAGACATAACAGGGTTAGATGATTCATCTTCTCCAGAATATAGAGATAAGCAACTGATATTTAAGTTAACATCATTTTGTTGATTACTTCCATTTAATTTTATTGACAAATCTGGACAAATAATATTTGAAACTAAATTTGCACTGATCAACCGATTTACATCACAACAGAGAAATGAGGCTTGATAATTGTCTTTCTCATCAGAATTGTTT]

[+] EMBL CD085586             [AATTTGATCAGCTGCTTTTGGTAAATCTATACTAGCTAAATCAATCATATTTTTAAATAGCACAGACCATTCCTTAACATTTAAAGGAAATTTGATAGGAAGAAAATATTTTTGCATAGATTCATCAGTTTTTTTCATTAGAACTATGATTAATTTCACCAGACATAACAGGGTTAGATGATTCATCTTCTCCAGAATATAGAGATAAGCAACTGATATTTAAGTTAACATCATTTTGTTGATTACTTCCATTTAATTTTATTGACAAATCTGGACAAATAATATTTGAAACTAAATTTGCACTGATCAACCGATTTACATCACAACAGAGAAATGAGGCTTGATAATTGTCTTTCTCATCAGAATTGTTT]




>consensus_5301#1
AATTTGATCAGCTGCTTTTGGTAAATCTATACTAGCTAAATCAATCATATTTTTAAATAG
CACAGACCATTCCTTAACATTTAAAGGAAATTTGATAGGAAGAAAATATTTTTGCATAGA
TTCATCAGTTTTTTTCATTAGAACTATGATTAATTTCACCAGACATAACAGGGTTAGATG
ATTCATCTTCTCCAGAATATAGAGATAAGCAACTGATATTTAAGTTAACATCATTTTGTT
GATTACTTCCATTTAATTTTATTGACAAATCTGGACAAATAATATTTGAAACTAAATTTG
CACTGATCAACCGATTTACATCACAACAGAGAAATGAGGCTTGATAATTGTCTTTCTCAT
CAGAATTGTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5301#0      AATTTCGATCAGACTGGCTGTTTGGCTAACATCTATTACTTTAGCGTAAGATCACATCAT 60
consensus_5301#1      -AATTTGATCAGCT--GCT-TTTGGTAAATCTATACTA-------GCTAAATCA----AT 45
                       * ** ******    *** *****  **  * ** **       *  * ****    **

consensus_5301#0      TATTCTCTTAAATGAGCACAGAACCATCTCCTTAACATTTAAAGGAAATTTGATAGGAAG 120
consensus_5301#1      CATATTTTTAAAT-AGCACAGA-CCAT-TCCTTAACATTTAAAGGAAATTTGATAGGAAG 102
                       **  * ****** ******** **** ********************************

consensus_5301#0      AAAATATTTTTGCATAGATTCATCAGTTTTTTTCATTAGAACTATGATTAATTTCACTAG 180
consensus_5301#1      AAAATATTTTTGCATAGATTCATCAGTTTTTTTCATTAGAACTATGATTAATTTCACCAG 162
                      ********************************************************* **

consensus_5301#0      ACATAACAGGGTTAGATGATTCATCTTCTCCAGAATATAGAGATAAGCAACTGTTATTTA 240
consensus_5301#1      ACATAACAGGGTTAGATGATTCATCTTCTCCAGAATATAGAGATAAGCAACTGATATTTA 222
                      ***************************************************** ******

consensus_5301#0      GGTTAACATCATTTTGTTGATTACTTCCATTTAATTTTATTGACAAATCTGATGAGAAAG 300
consensus_5301#1      AGTTAACATCATTTTGTTGATTACTTCCATTTAATTTTATTGACAAATCTG----GACAA 278
                       **************************************************    ** * 

consensus_5301#0      ACAATTATCAAGCCTCATTTCTCTGTTGTGATGTAAATCGGTTGATCAGTGCAAAGGGCG 360
consensus_5301#1      ATAATATTTGAAACTAAATTTGCACTGATCAACCGATTTACATCACAACAGAGAAATGAG 338
                      * ***  *  *  ** * **  *  *  * *    * *    * *  *  *  **  * *

consensus_5301#0      AATTCGTTTAAACCT------------------ 375
consensus_5301#1      GCTTGATAATTGTCTTTCTCATCAGAATTGTTT 371
                        **  *      **