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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5302#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 586 fasta sequence
[AAAGAAAGCCTGATGAATCTGTTAGTGATCAGGTCCCAGTTAAAGTAATTGAAAAATCAAGTGAGGGTTCTCGACGTCCTGCGACTATAAGTCCTATCAAATTAAATGTACCCGCACAGGTTGGATATTGTTAATAATGTCGTGTAGATTACATCTAAAGGATCCTACACCCGAAATCCCTAAAAAGGTAGACAGCAAGGTTCGTGAAGTCTTCAACTCAGATGAGGAAAGTGAGGAAGAGGAAATTCCAACGGAAGCCAGAATACGAATGCGAAATTTAGGAAGATACACTCCTACATCTTGCGGACCGAATTCTTTTGGAAAAGGAAGATTTGGTTTTGTTGATCGTAGAGCATTACTTAATAAACAAATAGAAGCATTAAATGAAGCAGTTTCAGGGGAGAATGAACGCTAGGTATCGTATTACCATATGTCAAGCAAAAAACCACTGTTACTAACGAAATCGTCCCCAGTATTTATCCACCCTTAATTGTGTGTGTATAAAAAAAGTTAATGATAATTGNAATTATGTTTCATTTTCTTTATTCTTCTTCTCAAAAACTCAATGAATATTTATATATAAGAT]
[+] EMBL CD078775 [AAAGAAAGCCTGATGAATCTGTTAGTGATCAGGTCCCAGTTAAAGTAATTGAAAAATCAAGTGAGGGTTCTCGACGTCCTGCGACTATAAGTCCTATCAAATTAAATGTACCCGCACAGGTTGGATATTGTTAATAATGTCGTGTAGATTACATCTAAAGGATCCTACACCCGAAATCCCTAAAAAGGTAGACAGCAAGGTTCGTGAAGTCTTCAACTCAGATGAGGAAAGTGAGGAAGAGGAAATTCCAACGGAAGCCAGAATACGAATGCGAAATTTAGGAAGATACACTCCTACATCTTGCGGACCGAATTCTTTTGGAAAAGGAAGATTTGGTTTTGTTGATCGTAGAGCATTACTTAATAAACAAATAGAAGCATTAAATGAAGCAGTTTCAGGGGAGAATGAACGCTAGGTATCGTATTACCATATGTCAAGCAAAAAACCACTGTTACTAACGAAATCGTCCCCAGTATTTATCCACCCTTAATTGTGTGTGTATAAAAAAAGTTAATGATAATTGNAATTATGTTTCATTTTCTTTATTCTTCTTCTCAAAAACTCAATGAATATTTATATATAAGA ]
[-] EMBL CD073235 [ TGATGAATCTGTTAGTGATCAGGTCCCAGTTAAAGTAATTGAAAAATCAAGTGAGGGTTCTCGACGTCCTGCGACTATAAGTCCTATCAAATTAAATGTACCCGCACAGGTTGGATATTGTTAATAATGTCGTGTAGATTACATCTAAAGGATCCTACACCCGAAATCCCTAAAAAGGTAGACAGCAAGGTTCGTGAAGTCTTCAACTCAGATGAGGAAAGTGAGGAAGAGGAAATTCCAACGGAAGCCAGAATACGAATGCGAAATTTAGGAAGATACACTCCTACATCTTGCGGACCGAATTCTTTTGGAAAAGGAAGATTTGGTTTTGTTGATCGTAGAGCATTACTTAATAAACAAATAGAAGCATTAAATGAAGCAGTTTCAGGGGAGAATGAACGCTAGGTATCGTATTACCATATGTCAAGCAAAAAACCACTGTTACTAACGAAATCGTCCCCAGTATTTATCCACCCTTAATTGTGTGTGTATAAAAAAAGTTAATGATAATTGTAATTATGTTTCATTTTCTTTATTCTTCTTCTCAAAAACTCAATGAATATTTATATATAAGAT]
consensusID : consensus_5302#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 515 fasta sequence
[GTTTATATTTATTCGTATGAGTTCGGGTAAATACGGCATCTTTTGTGCATAAGTTTTAATAGGACCTAAAACCCTGAAAAGAAAGCCTGATGAATCTGTTAGTGATCAGGTCCCAGTTAAAGTAATTGAAAAATCAAGTGAGGGTTCTCGACGTCCTGCGACTATAAGTCCTATCAAATTAAATGTACCCGCACAGGTTGGATATTGTTAATAATGTCGTGTAGATTACATCTAAAGGATCCTACACCCGAAATCCCTAAAAAGGTAGACAGCAAGGTTCGTGAAGTCTTCAACTCAGATGAGGAAGTGAGTTGTGTCTTAGATCTCAAAGTATACTCGTCTACAGAGTGAGGAAGAGGAAATTCCAACGGAAGCCAGAATACGAATGCGAAATTTAGGAAGATACACTCCTACATCTTGCGGACCGAATTCTTTTGGAAAAGGAAGATTTGGTTTTGTTGATCGTAGAGCATTACTTAATAAACAAATAGAAGCATTAAATGAAGCAGTTTCAG]
[+] EMBL CD084243 [GTTTATATTTATTCGTATGAGTTCGGGTAAATACGGCATCTTTTGTGCATAAGTTTTAATAGGACCTAAAACCCTGAAAAGAAAGCCTGATGAATCTGTTAGTGATCAGGTCCCAGTTAAAGTAATTGAAAAATCAAGTGAGGGTTCTCGACGTCCTGCGACTATAAGTCCTATCAAATTAAATGTACCCGCACAGGTTGGATATTGTTAATAATGTCGTGTAGATTACATCTAAAGGATCCTACACCCGAAATCCCTAAAAAGGTAGACAGCAAGGTTCGTGAAGTCTTCAACTCAGATGAGGAAGTGAGTTGTGTCTTAGATCTCAAAGTATACTCGTCTACAGAGTGAGGAAGAGGAAATTCCAACGGAAGCCAGAATACGAATGCGAAATTTAGGAAGATACACTCCTACATCTTGCGGACCGAATTCTTTTGGAAAAGGAAGATTTGGTTTTGTTGATCGTAGAGCATTACTTAATAAACAAATAGAAGCATTAAATGAAGCAGTTTCAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5302#0 ------------------------------------------------------------
consensus_5302#1 GTTTATATTTATTCGTATGAGTTCGGGTAAATACGGCATCTTTTGTGCATAAGTTTTAAT 60
consensus_5302#0 -----------------AAAGAAAGCCTGATGAATCTGTTAGTGATCAGGTCCCAGTTAA 43
consensus_5302#1 AGGACCTAAAACCCTGAAAAGAAAGCCTGATGAATCTGTTAGTGATCAGGTCCCAGTTAA 120
*******************************************
consensus_5302#0 AGTAATTGAAAAATCAAGTGAGGGTTCTCGACGTCCTGCGACTATAAGTCCTATCAAATT 103
consensus_5302#1 AGTAATTGAAAAATCAAGTGAGGGTTCTCGACGTCCTGCGACTATAAGTCCTATCAAATT 180
************************************************************
consensus_5302#0 AAATGTACCCGCACAGGTTGGATATTGTTAATAATGTCGTGTAGATTACATCTAAAGGAT 163
consensus_5302#1 AAATGTACCCGCACAGGTTGGATATTGTTAATAATGTCGTGTAGATTACATCTAAAGGAT 240
************************************************************
consensus_5302#0 CCTACACCCGAAATCCCTAAAAAGGTAGACAGCAAGGTTCGTGAAGTCTTCAACTCAGAT 223
consensus_5302#1 CCTACACCCGAAATCCCTAAAAAGGTAGACAGCAAGGTTCGTGAAGTCTTCAACTCAGAT 300
************************************************************
consensus_5302#0 GAGGAA----------------------------------------AGTGAGGAAGAGGA 243
consensus_5302#1 GAGGAAGTGAGTTGTGTCTTAGATCTCAAAGTATACTCGTCTACAGAGTGAGGAAGAGGA 360
****** **************
consensus_5302#0 AATTCCAACGGAAGCCAGAATACGAATGCGAAATTTAGGAAGATACACTCCTACATCTTG 303
consensus_5302#1 AATTCCAACGGAAGCCAGAATACGAATGCGAAATTTAGGAAGATACACTCCTACATCTTG 420
************************************************************
consensus_5302#0 CGGACCGAATTCTTTTGGAAAAGGAAGATTTGGTTTTGTTGATCGTAGAGCATTACTTAA 363
consensus_5302#1 CGGACCGAATTCTTTTGGAAAAGGAAGATTTGGTTTTGTTGATCGTAGAGCATTACTTAA 480
************************************************************
consensus_5302#0 TAAACAAATAGAAGCATTAAATGAAGCAGTTTCAGGGGAGAATGAACGCTAGGTATCGTA 423
consensus_5302#1 TAAACAAATAGAAGCATTAAATGAAGCAGTTTCAG------------------------- 515
***********************************
consensus_5302#0 TTACCATATGTCAAGCAAAAAACCACTGTTACTAACGAAATCGTCCCCAGTATTTATCCA 483
consensus_5302#1 ------------------------------------------------------------
consensus_5302#0 CCCTTAATTGTGTGTGTATAAAAAAAGTTAATGATAATTGNAATTATGTTTCATTTTCTT 543
consensus_5302#1 ------------------------------------------------------------
consensus_5302#0 TATTCTTCTTCTCAAAAACTCAATGAATATTTATATATAAGAT 586
consensus_5302#1 -------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||