These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5313#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 745 fasta sequence [GTTGGTTGCGTATTAATATAGTGATGACAATTCTCCGTTCTCAGAGCGTAATTTTTAGTGATTGTTCACAGCACGGTTAGAACCCACCGTGTGAAAATGCGCTGCGCTGATTTAGGAGAAGTCTGAGGTTTCATGCAGTTTTTTTCGCGTATTTTTCACTTGACATGCTCAAGTCACTATCTCTACTCTTATTTATTTTCTAGGTAAGTAGTGGAATCCGTTGGTTACGTGATGTAACTTCACAATCTGTCAATCCTATGATAACATGATTTACAATGTCTCTGAGTCAAATGATAACCAATTGTTTCTTCCTTAGGCGCTGCCCTACAGCTAACTAATCATCATTCGAAGATTAAGCGTGCAATGTGAATCACAAGCTGTTGAATTAATCAAGTCTGGTGTAGCATTGTCATTGGGGAGGCGTTACTGTATGTATTCGGGAACTCTCAGTACCGCANAAATGGTCTTTTTCCTAATGCTCAAAAATTTTTGGTTTTTAAGCCAAAGATTGCCGGTGAAAGCTGAACTGTATGTTGACTAGGTTAGTATAATGATGATTGTTGTTGTCCGTATTANATGTCGGTTAATGTTAGCTGNTTTAATGAGTCTGAAGTTTCCAATACATATTGTCACACGATTGTTTTTCTTTTTCAGATTGACTACGGGATCATGGAGTTCTGTCTTTCTATGTGTACCTTGGTTTGCAACAAACGTAAACCTCACAAATACTATTTTTGTTGAATAA] [+] EMBL CD078796 [GTTGGTTGCGTATTAATATAGTGATGACAATTCTCCGTTCTCAGAGCGTAATTTTTAGTGATTGTTCACAGCACGGTTAGAACCCACCGTGTGAAAATGCGCTGCGCTGATTTAGGAGAAGTCTGAGGTTTCATGCAGTTTTTTTCGCGTATTTTTCACTTGACATGCTCAAGTCACTATCTCTACTCTTATTTATTTTCTAGGTAAGTAGTGGAATCCGTTGGTTACGTGATGTAACTTCACAATCTGTCAATCCTATGATAACATGATTTACAATGTCTCTGAGTCAAATGATAACCAATTGTTTCTTCCTTAGGCGCTGCCCTACAGCTAACTAATCATCATTCGAAGATTAAGCGTGCAATGTGAATCACAAGCTGTTGAATTAATCAAGTCTGGTGTAGCATTGTCATTGGGGAGGCGTTACTGTATGTATTCGGGAACTCTCAGTACCGCANAAATGGTCTTTTTCCTAATGCTCAAAAATTTTTGGTTTTTAAGCCAAAGATTGCCGGTGAAAGCTGAACTGTATGTTGACTAGGTTAGTATAATGATGATTGTTGTTGTCCGTATTANATGTCGGTTAATGTTAGCTGNTTTAATGAGTCTGAAGTTTCCAATAC ] [-] EMBL CD073257 [ TGCAGTTTTTTTCGCGTATTTTTCACTTGACATGCTCAAGTCACTATCTCTACTCTTATTTATTTTCTAGGTAAGTAGTGGAATCCGTTGGTTACGTGATGTAACTTCACAATCTGTCAATCCTATGATAACATGATTTACAATGTCTCTGAGTCAAATGATAACCAATTGTTTCTTCCTTAGGCGCTGCCCTACAGCTAACTAATCATCATTCGAAGATTAAGCGTGCAATGTGAATCACAAGCTGTTGAATTAATCAAGTCTGGTGTAGCATTGTCATTGGGGAGGCGTTACTGTATGTATTCGGGAACTCTCAGTACCGCAAAAATGGTCTTTTTCCTAATGCTCAAAAATTTTTGGTTTTTAAGCCAAAGATTGCCGGTGAAAGCTGAACTGTATGTTGACTAGGTTAGTATAATGATGATTGTTGTTGTCCGTATTAAATGTCGGTTAATGTTAGCTGGTTTAATGAGTCTGAAGTTTCCAATACATATTGTCACACGATTGTTTTTCTTTTTCAGATTGACTACGGGATCATGGAGTTCTGTCTTTCTATGTGTACCTTGGTTTGCAACAAACGTAAACCTCACAAATACTATTTTTGTTGAATAA] consensusID : consensus_5313#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 390 fasta sequence [GGCGTGCACCATGACCACAGTCGCATGGTTGGGCATGACAGGCGCTGCCCTACAGCTAACTAATCATCATTCGAAGATTAAGCGTGCAATGTGAATCACAAGCTGTTGAATTAATCAAGTCTGGTGTAGCATTGTCATTGGGGAGGCGTTACTGTATGTATTCGGGAACTCTCAGTACCGCAAAAATGGTCTTTTTCCTAATGCTCAAAAATTTTTGGTTTTTAAGCCAAAGATTGCCGGTGAAAGCTGAACTGTATGTTGACTAGATTGACTACGGGATCATGGAGTTCTGTCTTTCTATGTGTACCTTGGTTTGCAACAAACGTAAACCTCACAAATACTATTTTTGTTGAATAAAATTCTTTCAAAGTTTGTATTAAAAAAAAAAAA] [-] EMBL AI395491 [GGCGTGCACCATGACCACAGTCGCATGGTTGGGCATGACAGGCGCTGCCCTACAGCTAACTAATCATCATTCGAAGATTAAGCGTGCAATGTGAATCACAAGCTGTTGAATTAATCAAGTCTGGTGTAGCATTGTCATTGGGGAGGCGTTACTGTATGTATTCGGGAACTCTCAGTACCGCAAAAATGGTCTTTTTCCTAATGCTCAAAAATTTTTGGTTTTTAAGCCAAAGATTGCCGGTGAAAGCTGAACTGTATGTTGACTAGATTGACTACGGGATCATGGAGTTCTGTCTTTCTATGTGTACCTTGGTTTGCAACAAACGTAAACCTCACAAATACTATTTTTGTTGAATAAAATTCTTTCAAAGTTTGTATTAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5313#0 GTTGGTTGCGTATTAATATAGTGATGACAATTCTCCGTTCTCAGAGCGTAATTTTTAGTG 60 consensus_5313#1 ------------------------------------------------------------ consensus_5313#0 ATTGTTCACAGCACGGTTAGAACCCACCGTGTGAAAATGCGCTGCGCTGATTTAGGAGAA 120 consensus_5313#1 ------------------------------------------------------------ consensus_5313#0 GTCTGAGGTTTCATGCAGTTTTTTTCGCGTATTTTTCACTTGACATGCTCAAGTCACTAT 180 consensus_5313#1 ------------------------------------------------------------ consensus_5313#0 CTCTACTCTTATTTATTTTCTAGGTAAGTAGTGGAATCCGTTGGTTACGTGATGTAACTT 240 consensus_5313#1 ------------------------------------------------------------ consensus_5313#0 CACAATCTGTCAATCCTATGATAACATGATTTACAATGTCTCTG-AGTCAAATGATAACC 299 consensus_5313#1 ---------------------------GGCGTGCACCATGACCACAGTCGCATGGTTGGG 33 * * ** * * **** *** * consensus_5313#0 AATTGTTTCTTCCTTAGGCGCTGCCCTACAGCTAACTAATCATCATTCGAAGATTAAGCG 359 consensus_5313#1 CATGA---------CAGGCGCTGCCCTACAGCTAACTAATCATCATTCGAAGATTAAGCG 84 ** ********************************************* consensus_5313#0 TGCAATGTGAATCACAAGCTGTTGAATTAATCAAGTCTGGTGTAGCATTGTCATTGGGGA 419 consensus_5313#1 TGCAATGTGAATCACAAGCTGTTGAATTAATCAAGTCTGGTGTAGCATTGTCATTGGGGA 144 ************************************************************ consensus_5313#0 GGCGTTACTGTATGTATTCGGGAACTCTCAGTACCGCANAAATGGTCTTTTTCCTAATGC 479 consensus_5313#1 GGCGTTACTGTATGTATTCGGGAACTCTCAGTACCGCAAAAATGGTCTTTTTCCTAATGC 204 ************************************** ********************* consensus_5313#0 TCAAAAATTTTTGGTTTTTAAGCCAAAGATTGCCGGTGAAAGCTGAACTGTATGTTGACT 539 consensus_5313#1 TCAAAAATTTTTGGTTTTTAAGCCAAAGATTGCCGGTGAAAGCTGAACTGTATGTTGACT 264 ************************************************************ consensus_5313#0 AGGTTAGTATAATGATGATTGTTGTTGTCCGTATTANATGTCGGTTAATGTTAGCTGNTT 599 consensus_5313#1 AGATTGACTACGGGATCATGGAGTTCTGTCTTTCTATGTGTACCTTGGT--------TTG 316 ** ** *** ** * * * * ** *** ** * * consensus_5313#0 TAATGAGTCTGAAGTTTCCAATACATATTGTCACACGATTGTTTTTCTTTTTCAGATTGA 659 consensus_5313#1 CAACAAACGTAAACCTCACAAATACTATTTTTGT-TGAATAAAATTCTTTCAAAGTTTGT 375 ** * * ** * *** **** * ** * ****** ** *** consensus_5313#0 CTACGGGATCATGGAGTTCTGTCTTTCTATGTGTACCTTGGTTTGCAACAAACGTAAACC 719 consensus_5313#1 ATTAAAAAAAAAAAA--------------------------------------------- 390 * * * * consensus_5313#0 TCACAAATACTATTTTTGTTGAATAA 745 consensus_5313#1 -------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||