cluster # 5333

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Schistosoma mansoni
cluster # 5333 cluster # 5333 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5333#0 length = 519 sequences # 2

consensus_5333#1 length = 494 sequences # 1

consensusID : consensus_5333#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 519
fasta sequence

                              [CTGCCAGAGGATTTGAACAAAATTTATTCTGACGAAGAT-CA-TCGCTACCACTTT-GTC-TATTACATGCTCAGGATGTGGATCACCGTTACATAGTAAAGCTGCGGGATATCCAGGTTTCATACCCTCGACCGAATATAAAAACATTATGTCCAGTACGGGGCAATCACTTTCTCGTCCTAAATACAGAAAACCCGTGTTCACTCTTTGTGTACGTTGTAATCTGCTTCAAAAACACAACGAAGCGTCGAAAGTATATATTTGCATATTAATCCTAAATAGAATTTAGGAAACAATAAATGAGTCGTATTTTCTCACTAATGTAATCCAGGAAATACAAAAGTACGAAGATGCGGTTGTAATCGTTATTGCCGATGTGGCTAATCTCCCACATTCTTTAATTCCGGAATTACATACAGAATTGAAAGGCAAAAGGTTGGTTTTAGCGTAATATNGTTCTCAATCCTAGGTACGTGCTTGTCGGTAACAAGGCTGACCAGTTACCAGGTGATGGATCGCATT]

[+] EMBL CD065596             [CTGCCAGAGGATTTGAACAAAATTTATTCTGACGAAGAT CA TCGCTACCACTTT GTC TATTACATGCTCAGGATGTGGATCACCGTTACATAGTAAAGCTGCGGGATATCCAGGTTTCATACCCTCGACCGAATATAAAAACATTATGTCCAGTACGGGGCAATCACTTTCTCGTCCTAAATACAGAAAACCCGTGTTCACTCTTTGTGTACGTTGTAATCTGCTTCAAAAACACAACGAAGCGTCGAAAGTATATATTTGCATATTAATCCTAAATAGAATTTAGGAAACAATAAATGAGTCGTATTTTCTCACTAATGTAATCCAGGAAATACAAAAGTACGAAGATGCGGTTGTAATCGTTATTGCCGATGTGGCTAATCTCCCACATTCTTTAATTCCGGAATTACATACAGAATTGAAAGGCAAAAGGTTGGTTTTAGCGTAATATNGTTCTCAATCCTAGGTACGTGCTTGTCGGTAACAAGGCTGACCAGT                     ]
[+] EMBL CD065647             [                          TTCTGACGAAGATCCAGTCGCTACCACTTTAGTCGTAGTACATGCTCAGGATGTGGATTACCGTTACATAGTAAAGCTGCGGGATATCCAGGTTTCATACCCTCGATCGAATATAAGAACATTATGTCCAGTACGGGGCGATCACTTTCTCGTCCTAAATACAGAAAAGCCGTGTTCACTCTTTGTGTACGTTGTAATCTGCTTCAAAAAGACAACGAAGCGTCGAAAGTATATATTTGCATATTAATCCTAAATAGAATTTAGGAAACAATAAATGAGTCGTATTTTCTCACTAATGTAATCCAGGAAATACAAAAGTACGAAGATGCGGTTGTAATCGTTATTGCCGATGTGGCTAATCTCCCACATTCTTTAATTCCGGAATTACATACAGAATTGAAAGGCAAAAGGTTGGTTTTAGCGTAATATTGTTCTCAATCCTAGGTACGTGCTTGTCGGTAACAAGGCTGACCAGTTACCAGGTGATGGATCGCATT]




>consensus_5333#0
CTGCCAGAGGATTTGAACAAAATTTATTCTGACGAAGATCATCGCTACCACTTTGTCTAT
TACATGCTCAGGATGTGGATCACCGTTACATAGTAAAGCTGCGGGATATCCAGGTTTCAT
ACCCTCGACCGAATATAAAAACATTATGTCCAGTACGGGGCAATCACTTTCTCGTCCTAA
ATACAGAAAACCCGTGTTCACTCTTTGTGTACGTTGTAATCTGCTTCAAAAACACAACGA
AGCGTCGAAAGTATATATTTGCATATTAATCCTAAATAGAATTTAGGAAACAATAAATGA
GTCGTATTTTCTCACTAATGTAATCCAGGAAATACAAAAGTACGAAGATGCGGTTGTAAT
CGTTATTGCCGATGTGGCTAATCTCCCACATTCTTTAATTCCGGAATTACATACAGAATT
GAAAGGCAAAAGGTTGGTTTTAGCGTAATATNGTTCTCAATCCTAGGTACGTGCTTGTCG
GTAACAAGGCTGACCAGTTACCAGGTGATGGATCGCATT

consensusID : consensus_5333#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 494
fasta sequence

                              [GGCCTCTTGCTCCAGAGGATTTGAACAAAATTTATTCTGACGAAGATCCATCGCTACCACTTTTGTCTATTACATGCTCAGGATGTGGATCACCGTTACATAGTAAAGCTGCGGGATATCCAGGTTTCATACCCTCGACCGAATATAAAAACATTATGTCCAGTACGGGGCAATCACTTTCTCGTCCTAAATACAGAAAACCCGTGTTCACTCTTTGTGTACGTTGTAATCTGCTTCAAAAACACAACGAAGCGTCGAAAGAAACAATAAATGAGTCGTATTTTCTCACTAATGTAATCCAGGAAATACAAAAGTACGAAGATGCGGTTGTAATCGTTATTGCCGATGTGGCTAATCTCCCACATTCTTTAATTCCGGAATTACATACAGAATTGAAAGGCAAAGGTACGTGCTTGTCGGTAACAAGGCTGACCAGTTACCAGGTGATGGATCGCATTTCCGAGAGAGGTGGTGTTCAGCATTATTGGAGTATA]

[-] EMBL CD061819             [GGCCTCTTGCTCCAGAGGATTTGAACAAAATTTATTCTGACGAAGATCCATCGCTACCACTTTTGTCTATTACATGCTCAGGATGTGGATCACCGTTACATAGTAAAGCTGCGGGATATCCAGGTTTCATACCCTCGACCGAATATAAAAACATTATGTCCAGTACGGGGCAATCACTTTCTCGTCCTAAATACAGAAAACCCGTGTTCACTCTTTGTGTACGTTGTAATCTGCTTCAAAAACACAACGAAGCGTCGAAAGAAACAATAAATGAGTCGTATTTTCTCACTAATGTAATCCAGGAAATACAAAAGTACGAAGATGCGGTTGTAATCGTTATTGCCGATGTGGCTAATCTCCCACATTCTTTAATTCCGGAATTACATACAGAATTGAAAGGCAAAGGTACGTGCTTGTCGGTAACAAGGCTGACCAGTTACCAGGTGATGGATCGCATTTCCGAGAGAGGTGGTGTTCAGCATTATTGGAGTATA]




>consensus_5333#1
GGCCTCTTGCTCCAGAGGATTTGAACAAAATTTATTCTGACGAAGATCCATCGCTACCAC
TTTTGTCTATTACATGCTCAGGATGTGGATCACCGTTACATAGTAAAGCTGCGGGATATC
CAGGTTTCATACCCTCGACCGAATATAAAAACATTATGTCCAGTACGGGGCAATCACTTT
CTCGTCCTAAATACAGAAAACCCGTGTTCACTCTTTGTGTACGTTGTAATCTGCTTCAAA
AACACAACGAAGCGTCGAAAGAAACAATAAATGAGTCGTATTTTCTCACTAATGTAATCC
AGGAAATACAAAAGTACGAAGATGCGGTTGTAATCGTTATTGCCGATGTGGCTAATCTCC
CACATTCTTTAATTCCGGAATTACATACAGAATTGAAAGGCAAAGGTACGTGCTTGTCGG
TAACAAGGCTGACCAGTTACCAGGTGATGGATCGCATTTCCGAGAGAGGTGGTGTTCAGC
ATTATTGGAGTATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5333#0      --------CTGCCAGAGGATTTGAACAAAATTTATTCTGACGAAGATC-ATCGCTACCAC 51
consensus_5333#1      GGCCTCTTGCTCCAGAGGATTTGAACAAAATTTATTCTGACGAAGATCCATCGCTACCAC 60
                                 ************************************* ***********

consensus_5333#0      TTT-GTCTATTACATGCTCAGGATGTGGATCACCGTTACATAGTAAAGCTGCGGGATATC 110
consensus_5333#1      TTTTGTCTATTACATGCTCAGGATGTGGATCACCGTTACATAGTAAAGCTGCGGGATATC 120
                      *** ********************************************************

consensus_5333#0      CAGGTTTCATACCCTCGACCGAATATAAAAACATTATGTCCAGTACGGGGCAATCACTTT 170
consensus_5333#1      CAGGTTTCATACCCTCGACCGAATATAAAAACATTATGTCCAGTACGGGGCAATCACTTT 180
                      ************************************************************

consensus_5333#0      CTCGTCCTAAATACAGAAAACCCGTGTTCACTCTTTGTGTACGTTGTAATCTGCTTCAAA 230
consensus_5333#1      CTCGTCCTAAATACAGAAAACCCGTGTTCACTCTTTGTGTACGTTGTAATCTGCTTCAAA 240
                      ************************************************************

consensus_5333#0      AACACAACGAAGCGTCGAAAGTATATATTTGCATATTAATCCTAAATAGAATTTAGGAAA 290
consensus_5333#1      AACACAACGAAGCGTCGAAAG------------------------------------AAA 264
                      *********************                                    ***

consensus_5333#0      CAATAAATGAGTCGTATTTTCTCACTAATGTAATCCAGGAAATACAAAAGTACGAAGATG 350
consensus_5333#1      CAATAAATGAGTCGTATTTTCTCACTAATGTAATCCAGGAAATACAAAAGTACGAAGATG 324
                      ************************************************************

consensus_5333#0      CGGTTGTAATCGTTATTGCCGATGTGGCTAATCTCCCACATTCTTTAATTCCGGAATTAC 410
consensus_5333#1      CGGTTGTAATCGTTATTGCCGATGTGGCTAATCTCCCACATTCTTTAATTCCGGAATTAC 384
                      ************************************************************

consensus_5333#0      ATACAGAATTGAAAGGCAAAAGGTTGGTTTTAGCG-TAATATNGTTCTCAA--TCCTAGG 467
consensus_5333#1      ATACAGAATTGAAAGGCAAAGGTACGTGCTTGTCGGTAACAAGGCTGACCAGTTACCAGG 444
                      ******************** *   *   **  ** *** *  * *  * *  * * ***

consensus_5333#0      TACGTGCTTGTCGGTAACAAGGCTGACCAGTTACCAGGTGATGGATCGCATT 519
consensus_5333#1      TGATGGATCGCATTTCCGAGAGAGGTGGTGTTCAGCATTATTGGAGTATA-- 494
                      *    * * *    *   *  *  *    ***      *  ****    *