These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_534#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 201 fasta sequence [ATTCCTATACGTACAGAAACACTGTATCCTAATAATCCCTTCGTACTAATCAGAACCAATTATAGATAAGAACCAACCTTGGCTTACACCGGTCCTTAACTCTAACTCATGTAAGATTTAAAAGTCGAACANACCTTCCTCTTTCCAGCCTCTCACTACCGAAAAAGGTCTCAACAAAGCCAACAATCGAGGGTANTGAAT] [+] EMBL AA999232 [ATTCCTATACGTACAGAAACACTGTATCCTAATAATCCCTTCGTACTAATCAGAACCAATTATAGATAAGAACCAACCTTGGCTTACACCGGTCCTTAACTCTAACTCATGTAAGATTTAAAAGTCGAACANACCTTCCTCTTTCCAGCCTCTCACTACCGAAAAAGGTCTCAACAAAGCCAACAATCGAGGGTANTGAAT] consensusID : consensus_534#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 184 fasta sequence [TTTTTTACCTAGAAACTTCCTATTCCTATACGTACAGAAACACTGTATCCTAATAATCCTTTCGTACTAATCAGAACCAATTATAGATAAGAACCAACCTGGCTTACACCGGTCTTAACTCAACTCATGAAGATTAAAAGTCGAACAGACTTCCTTTCCAGCCTCTACACCGAAAAGGTTCAAC] [-] EMBL AA952778 [TTTTTTACCTAGAAACTTCCTATTCCTATACGTACAGAAACACTGTATCCTAATAATCCTTTCGTACTAATCAGAACCAATTATAGATAAGAACCAACCTGGCTTACACCGGTCTTAACTCAACTCATGAAGATTAAAAGTCGAACAGACTTCCTTTCCAGCCTCTACACCGAAAAGGTTCAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_534#0 ---------------------ATTCCTATACGTACAGAAACACTGTATCCTAATAATCCC 39 consensus_534#1 TTTTTTACCTAGAAACTTCCTATTCCTATACGTACAGAAACACTGTATCCTAATAATCCT 60 ************************************** consensus_534#0 TTCGTACTAATCAGAACCAATTATAGATAAGAACCAACCTTGGCTTACACCGGTCCTTAA 99 consensus_534#1 TTCGTACTAATCAGAACCAATTATAGATAAGAACCAACCT-GGCTTACACCGGTC-TTAA 118 **************************************** ************** **** consensus_534#0 CTCTAACTCATGTAAGATTTAAAAGTCGAACANACCTTCCTCTTTCCAGCCTCTCACTAC 159 consensus_534#1 CTC-AACTCATG-AAGATT-AAAAGTCGAACAGACTTC---CTTTCCAGCCTCTA--CAC 170 *** ******** ****** ************ ** * ************* ** consensus_534#0 CGAAAAAGGTCTCAACAAAGCCAACAATCGAGGGTANTGAAT 201 consensus_534#1 CGAAAAGG--TTCAAC-------------------------- 184 ****** * ***** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||