cluster # 534

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Schistosoma mansoni
cluster # 534 cluster # 534 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_534#0 length = 201 sequences # 1

consensus_534#1 length = 184 sequences # 1

consensusID : consensus_534#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 201
fasta sequence

                              [ATTCCTATACGTACAGAAACACTGTATCCTAATAATCCCTTCGTACTAATCAGAACCAATTATAGATAAGAACCAACCTTGGCTTACACCGGTCCTTAACTCTAACTCATGTAAGATTTAAAAGTCGAACANACCTTCCTCTTTCCAGCCTCTCACTACCGAAAAAGGTCTCAACAAAGCCAACAATCGAGGGTANTGAAT]

[+] EMBL AA999232             [ATTCCTATACGTACAGAAACACTGTATCCTAATAATCCCTTCGTACTAATCAGAACCAATTATAGATAAGAACCAACCTTGGCTTACACCGGTCCTTAACTCTAACTCATGTAAGATTTAAAAGTCGAACANACCTTCCTCTTTCCAGCCTCTCACTACCGAAAAAGGTCTCAACAAAGCCAACAATCGAGGGTANTGAAT]




>consensus_534#0
ATTCCTATACGTACAGAAACACTGTATCCTAATAATCCCTTCGTACTAATCAGAACCAAT
TATAGATAAGAACCAACCTTGGCTTACACCGGTCCTTAACTCTAACTCATGTAAGATTTA
AAAGTCGAACANACCTTCCTCTTTCCAGCCTCTCACTACCGAAAAAGGTCTCAACAAAGC
CAACAATCGAGGGTANTGAAT

consensusID : consensus_534#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 184
fasta sequence

                              [TTTTTTACCTAGAAACTTCCTATTCCTATACGTACAGAAACACTGTATCCTAATAATCCTTTCGTACTAATCAGAACCAATTATAGATAAGAACCAACCTGGCTTACACCGGTCTTAACTCAACTCATGAAGATTAAAAGTCGAACAGACTTCCTTTCCAGCCTCTACACCGAAAAGGTTCAAC]

[-] EMBL AA952778             [TTTTTTACCTAGAAACTTCCTATTCCTATACGTACAGAAACACTGTATCCTAATAATCCTTTCGTACTAATCAGAACCAATTATAGATAAGAACCAACCTGGCTTACACCGGTCTTAACTCAACTCATGAAGATTAAAAGTCGAACAGACTTCCTTTCCAGCCTCTACACCGAAAAGGTTCAAC]




>consensus_534#1
TTTTTTACCTAGAAACTTCCTATTCCTATACGTACAGAAACACTGTATCCTAATAATCCT
TTCGTACTAATCAGAACCAATTATAGATAAGAACCAACCTGGCTTACACCGGTCTTAACT
CAACTCATGAAGATTAAAAGTCGAACAGACTTCCTTTCCAGCCTCTACACCGAAAAGGTT
CAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_534#0      ---------------------ATTCCTATACGTACAGAAACACTGTATCCTAATAATCCC 39
consensus_534#1      TTTTTTACCTAGAAACTTCCTATTCCTATACGTACAGAAACACTGTATCCTAATAATCCT 60
                                          ************************************** 

consensus_534#0      TTCGTACTAATCAGAACCAATTATAGATAAGAACCAACCTTGGCTTACACCGGTCCTTAA 99
consensus_534#1      TTCGTACTAATCAGAACCAATTATAGATAAGAACCAACCT-GGCTTACACCGGTC-TTAA 118
                     **************************************** ************** ****

consensus_534#0      CTCTAACTCATGTAAGATTTAAAAGTCGAACANACCTTCCTCTTTCCAGCCTCTCACTAC 159
consensus_534#1      CTC-AACTCATG-AAGATT-AAAAGTCGAACAGACTTC---CTTTCCAGCCTCTA--CAC 170
                     *** ******** ****** ************ ** *    *************    **

consensus_534#0      CGAAAAAGGTCTCAACAAAGCCAACAATCGAGGGTANTGAAT 201
consensus_534#1      CGAAAAGG--TTCAAC-------------------------- 184
                     ****** *   *****