cluster # 5343

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Schistosoma mansoni
cluster # 5343 cluster # 5343 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5343#0 length = 547 sequences # 2

consensus_5343#1 length = 340 sequences # 1

consensusID : consensus_5343#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 547
fasta sequence

                              [TTTTATATTCAATAGTCAATGGTTCATATTTATTTATTTTTTTAAATTTTCATTTATTCATTTAACTAAACCGATATACATAGCAACAATCAAATCATAGTGAACATTGATATTGACTTGGTTATATACTACTGAAATACAAAATTGGTGATCATTTTGAAATCATCTCAAATACAAACATATTTTGAAGTAATTCACTTATAAATTGGATGATCAAATATGCCATCGCCTACAACACAAACAGCAGTTCAAAGAGATCCAATCACAGGTCTTGGTACATTACCAAAAGAACATGTTGAACTTGGACGTACAAGAAATGCTTCAACTGGTAGACCGGCTTTCAATACAACCTTAATAGCATGGGATGTTGATAATGCCACAGTATGTAAGAATAATGGACATACAATTAAGAAAAGTAAACAGCCAACACGTAATCCAATTGCTTTAACTGGTGATCTTGGTGATGAAGTCGATGGATTACGTACAACTAATGGTTCACGAAGTGGAACTCCTAGAGAACCACAACGTGATCCTATTTCTGGAAGAG]

[+] EMBL CD155730             [TTTTATATTCAATAGTCAATGGTTCATATTTATTTATTTTTTTAAATTTTCATTTATTCATTTAACTAAACCGATATACATAGCAACAATCAAATCATAGTGAACATTGATATTGACTTGGTTATATACTACTGAAATACAAAATTGGTGATCATTTTGAAATCATCTCAAATACAAACATATTTTGAAGTAATTCACTTATAAATTGGATGATCAAATATGCCATCGCCTACAACACAAACAGCAGTTCAAAGAGATCCAATCACAGGTCTTGGTACATTACCAAAAGAACATGTTGAACTTGGACGTACAAGAAATGCTTCAACTGGTAGACCGGCTTTCAATACAACCTTAATAGCATGGGATGTTGATAATGCCACAGTATGTAAGAATAATGGACATACAATTAAGAAAAGTAAACAGCCAACACGTAATCCAATTGCTTTAACTGGTGATCTTGGTGATGAAGTCGATGGATTACGTACAACTAATGGTTCA                                                 ]
[-] EMBL CD191423             [                                                                                                                                                                                                                                                                                    ACATTACCAAAAGAACATGTTGAACTTGGACGTACAAGAAATGCTTCAACTGGTAGACCGGCTTTCAATACAACCTTAATAGCATGGGATGTTGGTAATGCCACAGTATGTAAGAATAATGGACATACAATTAAGAAAAGTAAACAGCCAACACGTAATCCAATTGCTTTAACTGGTGATCTTGGTGATGAAGTCGATGGATTACGTACAACTAATGGTTCACGAAGTGGAACTCCTAGAGAACCACAACGTGATCCTATTTCTGGAAGAG]




>consensus_5343#0
TTTTATATTCAATAGTCAATGGTTCATATTTATTTATTTTTTTAAATTTTCATTTATTCA
TTTAACTAAACCGATATACATAGCAACAATCAAATCATAGTGAACATTGATATTGACTTG
GTTATATACTACTGAAATACAAAATTGGTGATCATTTTGAAATCATCTCAAATACAAACA
TATTTTGAAGTAATTCACTTATAAATTGGATGATCAAATATGCCATCGCCTACAACACAA
ACAGCAGTTCAAAGAGATCCAATCACAGGTCTTGGTACATTACCAAAAGAACATGTTGAA
CTTGGACGTACAAGAAATGCTTCAACTGGTAGACCGGCTTTCAATACAACCTTAATAGCA
TGGGATGTTGATAATGCCACAGTATGTAAGAATAATGGACATACAATTAAGAAAAGTAAA
CAGCCAACACGTAATCCAATTGCTTTAACTGGTGATCTTGGTGATGAAGTCGATGGATTA
CGTACAACTAATGGTTCACGAAGTGGAACTCCTAGAGAACCACAACGTGATCCTATTTCT
GGAAGAG

consensusID : consensus_5343#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 340
fasta sequence

                              [ATAATATTGGAATCGTGAAAAAACATTTACCTAATGTGGTTTTGAAAGGGTTTTAAACATCGCACAGTTCAAAGAGATCCATTCACAGGTCTTGGTACATTCTCAAAAGAACATGTTGAGCTTGGACGTACAAGAAATGCTTCAACTGGTAGATCGGCTTTCAATACAACCTTAATAGCATGGGATGTTGATAATGCCACAGTATGTAAGAATAATGGACATACAATTAAGAAAAGTAAACAGCCAACACGTAATCCAATTGCTATAACTGGTGATTTTGGTGATGAAGTCGATGGATTACGTACAACTAATGGTTCACGAAGTGGAATTTATAGAGAGG]

[-] EMBL CD129617             [ATAATATTGGAATCGTGAAAAAACATTTACCTAATGTGGTTTTGAAAGGGTTTTAAACATCGCACAGTTCAAAGAGATCCATTCACAGGTCTTGGTACATTCTCAAAAGAACATGTTGAGCTTGGACGTACAAGAAATGCTTCAACTGGTAGATCGGCTTTCAATACAACCTTAATAGCATGGGATGTTGATAATGCCACAGTATGTAAGAATAATGGACATACAATTAAGAAAAGTAAACAGCCAACACGTAATCCAATTGCTATAACTGGTGATTTTGGTGATGAAGTCGATGGATTACGTACAACTAATGGTTCACGAAGTGGAATTTATAGAGAGG]




>consensus_5343#1
ATAATATTGGAATCGTGAAAAAACATTTACCTAATGTGGTTTTGAAAGGGTTTTAAACAT
CGCACAGTTCAAAGAGATCCATTCACAGGTCTTGGTACATTCTCAAAAGAACATGTTGAG
CTTGGACGTACAAGAAATGCTTCAACTGGTAGATCGGCTTTCAATACAACCTTAATAGCA
TGGGATGTTGATAATGCCACAGTATGTAAGAATAATGGACATACAATTAAGAAAAGTAAA
CAGCCAACACGTAATCCAATTGCTATAACTGGTGATTTTGGTGATGAAGTCGATGGATTA
CGTACAACTAATGGTTCACGAAGTGGAATTTATAGAGAGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5343#0      TTTTATATTCAATAGTCAATGGTTCATATTTATTTATTTTTTTAAATTTTCATTTATTCA 60
consensus_5343#1      ------------------------------------------------------------
                                                                                  

consensus_5343#0      TTTAACTAAACCGATATACATAGCAACAATCAAATCATAGTGAACATTGATATTGACTTG 120
consensus_5343#1      ------------------------------------------------------------
                                                                                  

consensus_5343#0      GTTATATACTACTGAAATACAAAATTGGTGATCATTTTGAAATCATCTCAAATACAAACA 180
consensus_5343#1      ------------------------------ATAATATTGGAATCGT-------GAAAAAA 23
                                                    ** ** *** **** *         *** *

consensus_5343#0      TATTTTGAAGTAATTCACTTATAAATTGGATGATCAAATATGCCATCGCCTACAACACAA 240
consensus_5343#1      CATTT--ACCTAATGTGGTTTTGAAAGGGTT--TTAAA-----CATCGC----------- 63
                       ****  *  ****    ** * **  ** *  * ***     ******           

consensus_5343#0      ACAGCAGTTCAAAGAGATCCAATCACAGGTCTTGGTACATTACCAAAAGAACATGTTGAA 300
consensus_5343#1      ---ACAGTTCAAAGAGATCCATTCACAGGTCTTGGTACATTCTCAAAAGAACATGTTGAG 120
                          ***************** *******************  **************** 

consensus_5343#0      CTTGGACGTACAAGAAATGCTTCAACTGGTAGACCGGCTTTCAATACAACCTTAATAGCA 360
consensus_5343#1      CTTGGACGTACAAGAAATGCTTCAACTGGTAGATCGGCTTTCAATACAACCTTAATAGCA 180
                      ********************************* **************************

consensus_5343#0      TGGGATGTTGATAATGCCACAGTATGTAAGAATAATGGACATACAATTAAGAAAAGTAAA 420
consensus_5343#1      TGGGATGTTGATAATGCCACAGTATGTAAGAATAATGGACATACAATTAAGAAAAGTAAA 240
                      ************************************************************

consensus_5343#0      CAGCCAACACGTAATCCAATTGCTTTAACTGGTGATCTTGGTGATGAAGTCGATGGATTA 480
consensus_5343#1      CAGCCAACACGTAATCCAATTGCTATAACTGGTGATTTTGGTGATGAAGTCGATGGATTA 300
                      ************************ *********** ***********************

consensus_5343#0      CGTACAACTAATGGTTCACGAAGTGGAACTCCTAGAGAACCACAACGTGATCCTATTTCT 540
consensus_5343#1      CGTACAACTAATGGTTCACGAAGTGGAATTTATAGAGAGG-------------------- 340
                      **************************** *  ******                      

consensus_5343#0      GGAAGAG 547
consensus_5343#1      -------