These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5343#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 547 fasta sequence [TTTTATATTCAATAGTCAATGGTTCATATTTATTTATTTTTTTAAATTTTCATTTATTCATTTAACTAAACCGATATACATAGCAACAATCAAATCATAGTGAACATTGATATTGACTTGGTTATATACTACTGAAATACAAAATTGGTGATCATTTTGAAATCATCTCAAATACAAACATATTTTGAAGTAATTCACTTATAAATTGGATGATCAAATATGCCATCGCCTACAACACAAACAGCAGTTCAAAGAGATCCAATCACAGGTCTTGGTACATTACCAAAAGAACATGTTGAACTTGGACGTACAAGAAATGCTTCAACTGGTAGACCGGCTTTCAATACAACCTTAATAGCATGGGATGTTGATAATGCCACAGTATGTAAGAATAATGGACATACAATTAAGAAAAGTAAACAGCCAACACGTAATCCAATTGCTTTAACTGGTGATCTTGGTGATGAAGTCGATGGATTACGTACAACTAATGGTTCACGAAGTGGAACTCCTAGAGAACCACAACGTGATCCTATTTCTGGAAGAG] [+] EMBL CD155730 [TTTTATATTCAATAGTCAATGGTTCATATTTATTTATTTTTTTAAATTTTCATTTATTCATTTAACTAAACCGATATACATAGCAACAATCAAATCATAGTGAACATTGATATTGACTTGGTTATATACTACTGAAATACAAAATTGGTGATCATTTTGAAATCATCTCAAATACAAACATATTTTGAAGTAATTCACTTATAAATTGGATGATCAAATATGCCATCGCCTACAACACAAACAGCAGTTCAAAGAGATCCAATCACAGGTCTTGGTACATTACCAAAAGAACATGTTGAACTTGGACGTACAAGAAATGCTTCAACTGGTAGACCGGCTTTCAATACAACCTTAATAGCATGGGATGTTGATAATGCCACAGTATGTAAGAATAATGGACATACAATTAAGAAAAGTAAACAGCCAACACGTAATCCAATTGCTTTAACTGGTGATCTTGGTGATGAAGTCGATGGATTACGTACAACTAATGGTTCA ] [-] EMBL CD191423 [ ACATTACCAAAAGAACATGTTGAACTTGGACGTACAAGAAATGCTTCAACTGGTAGACCGGCTTTCAATACAACCTTAATAGCATGGGATGTTGGTAATGCCACAGTATGTAAGAATAATGGACATACAATTAAGAAAAGTAAACAGCCAACACGTAATCCAATTGCTTTAACTGGTGATCTTGGTGATGAAGTCGATGGATTACGTACAACTAATGGTTCACGAAGTGGAACTCCTAGAGAACCACAACGTGATCCTATTTCTGGAAGAG] consensusID : consensus_5343#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 340 fasta sequence [ATAATATTGGAATCGTGAAAAAACATTTACCTAATGTGGTTTTGAAAGGGTTTTAAACATCGCACAGTTCAAAGAGATCCATTCACAGGTCTTGGTACATTCTCAAAAGAACATGTTGAGCTTGGACGTACAAGAAATGCTTCAACTGGTAGATCGGCTTTCAATACAACCTTAATAGCATGGGATGTTGATAATGCCACAGTATGTAAGAATAATGGACATACAATTAAGAAAAGTAAACAGCCAACACGTAATCCAATTGCTATAACTGGTGATTTTGGTGATGAAGTCGATGGATTACGTACAACTAATGGTTCACGAAGTGGAATTTATAGAGAGG] [-] EMBL CD129617 [ATAATATTGGAATCGTGAAAAAACATTTACCTAATGTGGTTTTGAAAGGGTTTTAAACATCGCACAGTTCAAAGAGATCCATTCACAGGTCTTGGTACATTCTCAAAAGAACATGTTGAGCTTGGACGTACAAGAAATGCTTCAACTGGTAGATCGGCTTTCAATACAACCTTAATAGCATGGGATGTTGATAATGCCACAGTATGTAAGAATAATGGACATACAATTAAGAAAAGTAAACAGCCAACACGTAATCCAATTGCTATAACTGGTGATTTTGGTGATGAAGTCGATGGATTACGTACAACTAATGGTTCACGAAGTGGAATTTATAGAGAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5343#0 TTTTATATTCAATAGTCAATGGTTCATATTTATTTATTTTTTTAAATTTTCATTTATTCA 60 consensus_5343#1 ------------------------------------------------------------ consensus_5343#0 TTTAACTAAACCGATATACATAGCAACAATCAAATCATAGTGAACATTGATATTGACTTG 120 consensus_5343#1 ------------------------------------------------------------ consensus_5343#0 GTTATATACTACTGAAATACAAAATTGGTGATCATTTTGAAATCATCTCAAATACAAACA 180 consensus_5343#1 ------------------------------ATAATATTGGAATCGT-------GAAAAAA 23 ** ** *** **** * *** * consensus_5343#0 TATTTTGAAGTAATTCACTTATAAATTGGATGATCAAATATGCCATCGCCTACAACACAA 240 consensus_5343#1 CATTT--ACCTAATGTGGTTTTGAAAGGGTT--TTAAA-----CATCGC----------- 63 **** * **** ** * ** ** * * *** ****** consensus_5343#0 ACAGCAGTTCAAAGAGATCCAATCACAGGTCTTGGTACATTACCAAAAGAACATGTTGAA 300 consensus_5343#1 ---ACAGTTCAAAGAGATCCATTCACAGGTCTTGGTACATTCTCAAAAGAACATGTTGAG 120 ***************** ******************* **************** consensus_5343#0 CTTGGACGTACAAGAAATGCTTCAACTGGTAGACCGGCTTTCAATACAACCTTAATAGCA 360 consensus_5343#1 CTTGGACGTACAAGAAATGCTTCAACTGGTAGATCGGCTTTCAATACAACCTTAATAGCA 180 ********************************* ************************** consensus_5343#0 TGGGATGTTGATAATGCCACAGTATGTAAGAATAATGGACATACAATTAAGAAAAGTAAA 420 consensus_5343#1 TGGGATGTTGATAATGCCACAGTATGTAAGAATAATGGACATACAATTAAGAAAAGTAAA 240 ************************************************************ consensus_5343#0 CAGCCAACACGTAATCCAATTGCTTTAACTGGTGATCTTGGTGATGAAGTCGATGGATTA 480 consensus_5343#1 CAGCCAACACGTAATCCAATTGCTATAACTGGTGATTTTGGTGATGAAGTCGATGGATTA 300 ************************ *********** *********************** consensus_5343#0 CGTACAACTAATGGTTCACGAAGTGGAACTCCTAGAGAACCACAACGTGATCCTATTTCT 540 consensus_5343#1 CGTACAACTAATGGTTCACGAAGTGGAATTTATAGAGAGG-------------------- 340 **************************** * ****** consensus_5343#0 GGAAGAG 547 consensus_5343#1 ------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||