These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5349#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 441 fasta sequence [AATTCTTTTGGAAATTATCTACAATACAGAAAAGACAATGTTGAAGCCAGATTATTACGTTCTGTTGATAGAGTGAAAGACCAGACATTTTGGCTATCGACTATTTCTCACAAAGAACTTCCATATTGTATGTTTCCAGTTGGAGATCTATTAAAAACTCAAGTAAAACAAATTGCTCAAGATATTGGCCTTTCTCGTATATACTCCAGACGTGAAAGTATGGGGATGTGTTTTATTGGTAAAAGGCGATTCTCAGAGTTTATTGATAATTATTTGGAACCAAAGCCTGGTGTTTATAAAGATCTTGAAACTGATCAAGTTTTGGAAGAGCATACAGGTGTACATCATTTTACTTTGGGTCAAAGAATTCCTATTAAACGATTTAATGGACCTTATTATGTTAGTAAGATGGATTGTCACAATCAAATAATTTATGTAGTA] [+] EMBL CD185996 [AATTCTTTTGGAAATTATCTACAATACAGAAAAGACAATGTTGAAGCCAGATTATTACGTTCTGTTGATAGAGTGAAAGACCAGACATTTTGGCTATCGACTATTTCTCACAAAGAACTTCCATATTGTATGTTTCCAGTTGGAGATCTATTAAAAACTCAAGTAAAACAAATTGCTCAAGATATTGGCCTTTCTCGTATATACTCCAGACGTGAAAGTATGGGGATGTGTTTTATTGGTAAAAGGCGATTCTCAGAGTTTATTGATAATTATTTGGAACCAAAGCCTGGTGTTTATAAAGATCTTGAAACTGATCAAGTTTTGGAAGAGCATACAGGTGTACATCATTTTACTTTGGGTCAAAGAATTCCTATTAAACGATTTAATGGACCTTATTATGTTAGTAAGATGGATTGTCACAATCAAATAATTTATGTAGTA] [+] EMBL CD129613 [ acGCCAGATTATTACGTTCTGTTGATAGAGCGAAACACCAGACATTTTGGCTATCGACTATTTCTCACAAAGAACTTCCGTATTGTATGTTTCCAGATGGAGATCTGTTAAAAACTCAAGTAAAACAAATTGCTCAAGATATTGGCCTTTCTCGTATATACTCCAGACGTGAAAGTATGGTGATGTGTTTTATTGGTAAAAGGCGATTCTCAGAGTTTATTGATAATTATT ] consensusID : consensus_5349#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 403 fasta sequence [CTCGGAGTTTATTGATAATTATTTGGAACCAAAGCCTGGTGTTTATAAAGATCTTGAAACTGATCAAGTTTTGGAAGAGCATACAGGTACGTGATCCAGCCCATCCAAGTTTGTTTATGCGCAAGTGTTGGTGCGGTCCTGCAGTCTGGATAAACTCTGAGCCATTTTCATCCATAAACTCGAGGAATATTCAATTTCAATGGCAAAACAAATGGTGTCCAGTTAACTGTATCTTAAAACCTTTCAGTGATGTATCTTTGGCATCAGCTTACTTTAGGAAAGACATGAAACGATATCTTTTTAACTCAGACAATGCAACACTAGCCAGTGTAATCGATGCATCTATTGAAGATAACCGAGAAATTGGACCATGTTTATCAATCGAATTAGAAGCGCCAATGCG] [+] EMBL CD132788 [CTCGGAGTTTATTGATAATTATTTGGAACCAAAGCCTGGTGTTTATAAAGATCTTGAAACTGATCAAGTTTTGGAAGAGCATACAGGTACGTGATCCAGCCCATCCAAGTTTGTTTATGCGCAAGTGTTGGTGCGGTCCTGCAGTCTGGATAAACTCTGAGCCATTTTCATCCATAAACTCGAGGAATATTCAATTTCAATGGCAAAACAAATGGTGTCCAGTTAACTGTATCTTAAAACCTTTCAGTGATGTATCTTTGGCATCAGCTTACTTTAGGAAAGACATGAAACGATATCTTTTTAACTCAGACAATGCAACACTAGCCAGTGTAATCGATGCATCTATTGAAGATAACCGAGAAATTGGACCATGTTTATCAATCGAATTAGAAGCGCCAATGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5349#0 AATTCTTTTGGAAATTATCTACAATACAGAAAAGACAATGTTGAAGCCAGATTATTACGT 60 consensus_5349#1 -----------------CTCGGAGTTTATTGATAATTAT-TTGGAACCAAAGCCTGGTGT 42 * * * * * ** *** * *** * * ** consensus_5349#0 TCTGTTGATAGAGTGAAAGACCAGACATTTTGGCTATCGACTATTTCTCACAAAGAACTT 120 consensus_5349#1 T-TATAAAGATCTTGAAACTGATCAAGTTTTGG---AAGAGCATACAGGTACGTGATCCA 98 * * * * * ***** * ****** ** ** ** * consensus_5349#0 CCATATTGTATGTTTCCAGTTGGAGATCTATTAAAAACTCAAGTAAAACAAATTGCTCAA 180 consensus_5349#1 GCCCATC-CAAGTTTGTTTATGCGCAAGTGTTGG----TGCGGTCCTGCAGTCTGGATAA 153 * ** * **** ** * * ** * ** ** ** ** consensus_5349#0 GATATTGGCCTTTCTCGTATATACTCCAGACGTGAAAGTATGGGGATGTGTTTTATTGGT 240 consensus_5349#1 ACTCTGAGCCATTTTCATCCATAAACTCGAGG----AATAT-----TCAATTTCAATGGC 204 * * *** ** ** * *** * ** * * *** * *** * *** consensus_5349#0 AAAAGGCGATTCTCAGAGTTTATTGATAATTATTTGGAACCAAAGCCTGGTGTTTATAAA 300 consensus_5349#1 AAAA-------CAAATGGTGTCCAGTTAACTGTAT---CTTAAAACCTTTCAGTGATGTA 254 **** * * ** * * *** * * * *** *** * ** * consensus_5349#0 GATCTTGAAACTGATCAAGTTTTGGAAGAGCATACAGGTGTACATCATTTTACTTTGGGT 360 consensus_5349#1 T-CTTTGGCATCAGCTTACTTTAGGAAAGACATG-AAACG-ATATCTTTTTAACTCAGAC 311 *** * * *** **** *** * * * *** ***** * * consensus_5349#0 CAAAGAATTCCTATTAAACGATTTAATGGACCTTATTATGTTAGT----AAGATGGATTG 416 consensus_5349#1 AATGCAACACTAGCCAGTGTAATCGATGCATCTATTGAAGATAACCGAGAAATTGGACCA 371 * ** * * * * *** * ** * * * ** ** **** consensus_5349#0 TCACAATCAAATAATTTATGTAGTA-------- 441 consensus_5349#1 TGTTTATCAATCGAATTA-GAAGCGCCAATGCG 403 * ***** * *** * ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||