cluster # 5349

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Schistosoma mansoni
cluster # 5349 cluster # 5349 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5349#0 length = 441 sequences # 2

consensus_5349#1 length = 403 sequences # 1

consensusID : consensus_5349#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 441
fasta sequence

                              [AATTCTTTTGGAAATTATCTACAATACAGAAAAGACAATGTTGAAGCCAGATTATTACGTTCTGTTGATAGAGTGAAAGACCAGACATTTTGGCTATCGACTATTTCTCACAAAGAACTTCCATATTGTATGTTTCCAGTTGGAGATCTATTAAAAACTCAAGTAAAACAAATTGCTCAAGATATTGGCCTTTCTCGTATATACTCCAGACGTGAAAGTATGGGGATGTGTTTTATTGGTAAAAGGCGATTCTCAGAGTTTATTGATAATTATTTGGAACCAAAGCCTGGTGTTTATAAAGATCTTGAAACTGATCAAGTTTTGGAAGAGCATACAGGTGTACATCATTTTACTTTGGGTCAAAGAATTCCTATTAAACGATTTAATGGACCTTATTATGTTAGTAAGATGGATTGTCACAATCAAATAATTTATGTAGTA]

[+] EMBL CD185996             [AATTCTTTTGGAAATTATCTACAATACAGAAAAGACAATGTTGAAGCCAGATTATTACGTTCTGTTGATAGAGTGAAAGACCAGACATTTTGGCTATCGACTATTTCTCACAAAGAACTTCCATATTGTATGTTTCCAGTTGGAGATCTATTAAAAACTCAAGTAAAACAAATTGCTCAAGATATTGGCCTTTCTCGTATATACTCCAGACGTGAAAGTATGGGGATGTGTTTTATTGGTAAAAGGCGATTCTCAGAGTTTATTGATAATTATTTGGAACCAAAGCCTGGTGTTTATAAAGATCTTGAAACTGATCAAGTTTTGGAAGAGCATACAGGTGTACATCATTTTACTTTGGGTCAAAGAATTCCTATTAAACGATTTAATGGACCTTATTATGTTAGTAAGATGGATTGTCACAATCAAATAATTTATGTAGTA]
[+] EMBL CD129613             [                                           acGCCAGATTATTACGTTCTGTTGATAGAGCGAAACACCAGACATTTTGGCTATCGACTATTTCTCACAAAGAACTTCCGTATTGTATGTTTCCAGATGGAGATCTGTTAAAAACTCAAGTAAAACAAATTGCTCAAGATATTGGCCTTTCTCGTATATACTCCAGACGTGAAAGTATGGTGATGTGTTTTATTGGTAAAAGGCGATTCTCAGAGTTTATTGATAATTATT                                                                                                                                                                       ]




>consensus_5349#0
AATTCTTTTGGAAATTATCTACAATACAGAAAAGACAATGTTGAAGCCAGATTATTACGT
TCTGTTGATAGAGTGAAAGACCAGACATTTTGGCTATCGACTATTTCTCACAAAGAACTT
CCATATTGTATGTTTCCAGTTGGAGATCTATTAAAAACTCAAGTAAAACAAATTGCTCAA
GATATTGGCCTTTCTCGTATATACTCCAGACGTGAAAGTATGGGGATGTGTTTTATTGGT
AAAAGGCGATTCTCAGAGTTTATTGATAATTATTTGGAACCAAAGCCTGGTGTTTATAAA
GATCTTGAAACTGATCAAGTTTTGGAAGAGCATACAGGTGTACATCATTTTACTTTGGGT
CAAAGAATTCCTATTAAACGATTTAATGGACCTTATTATGTTAGTAAGATGGATTGTCAC
AATCAAATAATTTATGTAGTA

consensusID : consensus_5349#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 403
fasta sequence

                              [CTCGGAGTTTATTGATAATTATTTGGAACCAAAGCCTGGTGTTTATAAAGATCTTGAAACTGATCAAGTTTTGGAAGAGCATACAGGTACGTGATCCAGCCCATCCAAGTTTGTTTATGCGCAAGTGTTGGTGCGGTCCTGCAGTCTGGATAAACTCTGAGCCATTTTCATCCATAAACTCGAGGAATATTCAATTTCAATGGCAAAACAAATGGTGTCCAGTTAACTGTATCTTAAAACCTTTCAGTGATGTATCTTTGGCATCAGCTTACTTTAGGAAAGACATGAAACGATATCTTTTTAACTCAGACAATGCAACACTAGCCAGTGTAATCGATGCATCTATTGAAGATAACCGAGAAATTGGACCATGTTTATCAATCGAATTAGAAGCGCCAATGCG]

[+] EMBL CD132788             [CTCGGAGTTTATTGATAATTATTTGGAACCAAAGCCTGGTGTTTATAAAGATCTTGAAACTGATCAAGTTTTGGAAGAGCATACAGGTACGTGATCCAGCCCATCCAAGTTTGTTTATGCGCAAGTGTTGGTGCGGTCCTGCAGTCTGGATAAACTCTGAGCCATTTTCATCCATAAACTCGAGGAATATTCAATTTCAATGGCAAAACAAATGGTGTCCAGTTAACTGTATCTTAAAACCTTTCAGTGATGTATCTTTGGCATCAGCTTACTTTAGGAAAGACATGAAACGATATCTTTTTAACTCAGACAATGCAACACTAGCCAGTGTAATCGATGCATCTATTGAAGATAACCGAGAAATTGGACCATGTTTATCAATCGAATTAGAAGCGCCAATGCG]




>consensus_5349#1
CTCGGAGTTTATTGATAATTATTTGGAACCAAAGCCTGGTGTTTATAAAGATCTTGAAAC
TGATCAAGTTTTGGAAGAGCATACAGGTACGTGATCCAGCCCATCCAAGTTTGTTTATGC
GCAAGTGTTGGTGCGGTCCTGCAGTCTGGATAAACTCTGAGCCATTTTCATCCATAAACT
CGAGGAATATTCAATTTCAATGGCAAAACAAATGGTGTCCAGTTAACTGTATCTTAAAAC
CTTTCAGTGATGTATCTTTGGCATCAGCTTACTTTAGGAAAGACATGAAACGATATCTTT
TTAACTCAGACAATGCAACACTAGCCAGTGTAATCGATGCATCTATTGAAGATAACCGAG
AAATTGGACCATGTTTATCAATCGAATTAGAAGCGCCAATGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5349#0      AATTCTTTTGGAAATTATCTACAATACAGAAAAGACAATGTTGAAGCCAGATTATTACGT 60
consensus_5349#1      -----------------CTCGGAGTTTATTGATAATTAT-TTGGAACCAAAGCCTGGTGT 42
                                            * *  *   *  *  ** *** * *** *   *   **

consensus_5349#0      TCTGTTGATAGAGTGAAAGACCAGACATTTTGGCTATCGACTATTTCTCACAAAGAACTT 120
consensus_5349#1      T-TATAAAGATCTTGAAACTGATCAAGTTTTGG---AAGAGCATACAGGTACGTGATCCA 98
                      * * *  * *   *****      *  ******     **  **          ** *  

consensus_5349#0      CCATATTGTATGTTTCCAGTTGGAGATCTATTAAAAACTCAAGTAAAACAAATTGCTCAA 180
consensus_5349#1      GCCCATC-CAAGTTTGTTTATGCGCAAGTGTTGG----TGCGGTCCTGCAGTCTGGATAA 153
                       *  **   * ****     **   *  * **      *   **    **   **   **

consensus_5349#0      GATATTGGCCTTTCTCGTATATACTCCAGACGTGAAAGTATGGGGATGTGTTTTATTGGT 240
consensus_5349#1      ACTCTGAGCCATTTTCATCCATAAACTCGAGG----AATAT-----TCAATTTCAATGGC 204
                        * *  *** ** ** *  ***  *  ** *    * ***     *   *** * *** 

consensus_5349#0      AAAAGGCGATTCTCAGAGTTTATTGATAATTATTTGGAACCAAAGCCTGGTGTTTATAAA 300
consensus_5349#1      AAAA-------CAAATGGTGTCCAGTTAACTGTAT---CTTAAAACCTTTCAGTGATGTA 254
                      ****       *  *  ** *   * *** * * *      *** ***     * **  *

consensus_5349#0      GATCTTGAAACTGATCAAGTTTTGGAAGAGCATACAGGTGTACATCATTTTACTTTGGGT 360
consensus_5349#1      T-CTTTGGCATCAGCTTACTTTAGGAAAGACATG-AAACG-ATATCTTTTTAACTCAGAC 311
                          ***  *       * *** ****   ***  *   * * *** *****  *  *  

consensus_5349#0      CAAAGAATTCCTATTAAACGATTTAATGGACCTTATTATGTTAGT----AAGATGGATTG 416
consensus_5349#1      AATGCAACACTAGCCAGTGTAATCGATGCATCTATTGAAGATAACCGAGAAATTGGACCA 371
                       *   **  *     *    * *  *** * **  * * * **      **  ****   

consensus_5349#0      TCACAATCAAATAATTTATGTAGTA-------- 441
consensus_5349#1      TGTTTATCAATCGAATTA-GAAGCGCCAATGCG 403
                      *    *****   * *** * **