cluster # 5358

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 5358 cluster # 5358 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5358#0 length = 524 sequences # 2

consensus_5358#1 length = 240 sequences # 1

consensusID : consensus_5358#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 524
fasta sequence

                              [TCCGAATAAAATGATAATCTCACAAGATCTTTTAATATCTCTGTATCAGGTCGAAGATTTGGATCATTGAGAGAAATACTGCACAATTTCGGAAACCAAATAGATAGGCAAACTAACACAGCTGAAATTGGTTGTAGTGTCCAGAATTTCAAAAATGTAGAAGAGTGTGGATGTGAACAATTCTCTATTACGGCATCAGTCAGATGATATTGAAGCAGAAAGTGAATACATTTCACAATAATTCGTTTACAAGAATTTTTATGTGGGTCAGATAAGCAACTAAATAAACGCAAAGCAAGACATACTTCTATTAATAAATAAGTAATCTGAGATGAATTAACTGTCATATTAGTTAAATCAAATAACTTGTCTAAATTTAGAATTCGTTCATTCACTTGTTGTTCAATAATACTAGTTGATACC-TTTGTAAACGATTTATTGGAATAGGGACATAATACCAAATTAATGGAACCAGACGTTTGAACTAATCAAATCTGTATTTGAATTCGTATAGATAAAGTTAA]

[+] EMBL CD129511             [TCCGAATAAAATGATAATCTCACAAGATCTTTTAATATCTCTGTATCAGGTCGAAGATTTGGATCATTGAGAGAAATACTGCACAATTTCGGAAACCAAATAGATAGGCAAACTAACACAGCTGAAATTGGTTGTAGTGTCCAGAATTTCAAAAATGTAGAAGAGTGTGGATGTGAACAATTCTCTATTACGGCATCAGTCAGATGATATTGAAGCAGAAAGTGAATACATTTCACAATAATTCGTTTACAAGAATTTTTATGTGGGTCAGATAAGCAACTAAATAAACGCAAAGCAAGACATACTTCTATTAATAAATAAGTAATCTGAGATGAATTAACTGTCATATTAGTTAAATCAAATAACTTGTCTAAATTTAGAATTCGTTCATTCACTTGTTGTTCAATAATACTAGTTGATACC TTTGTAAACGATTTATTGGAATAGGGACATAATACCAAATTAATGGAACCAGACGTTTGAACT                                      ]
[+] EMBL CD129645             [                                                                                                                                                                                                                                                                                TAAGCAACTAAATAAACGCAAAGCAAGACATACTTCTATTAATAAATAAGTAATCTGAGATGAATTAACTGTCATATTAGTTAAATCAAATAACTTGTCTAAATTTAGAATTCGTTCATTCACTTGTTGGTCAATAATACTAGTTGATACCTTTTGTAAACGATTTATTGGAATAGGGACATAATACCAAATTAAT GAACCAGACG TTGAACTAATCAAATCTGTATTTGAATTCGTATAGATAAAGTTAA]




>consensus_5358#0
TCCGAATAAAATGATAATCTCACAAGATCTTTTAATATCTCTGTATCAGGTCGAAGATTT
GGATCATTGAGAGAAATACTGCACAATTTCGGAAACCAAATAGATAGGCAAACTAACACA
GCTGAAATTGGTTGTAGTGTCCAGAATTTCAAAAATGTAGAAGAGTGTGGATGTGAACAA
TTCTCTATTACGGCATCAGTCAGATGATATTGAAGCAGAAAGTGAATACATTTCACAATA
ATTCGTTTACAAGAATTTTTATGTGGGTCAGATAAGCAACTAAATAAACGCAAAGCAAGA
CATACTTCTATTAATAAATAAGTAATCTGAGATGAATTAACTGTCATATTAGTTAAATCA
AATAACTTGTCTAAATTTAGAATTCGTTCATTCACTTGTTGTTCAATAATACTAGTTGAT
ACCTTTGTAAACGATTTATTGGAATAGGGACATAATACCAAATTAATGGAACCAGACGTT
TGAACTAATCAAATCTGTATTTGAATTCGTATAGATAAAGTTAA

consensusID : consensus_5358#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 240
fasta sequence

                              [CTTGTCACTACCTTGGCGATCAGTCAGATGATATTGAAGCAGAAAGTGAATACATTTCACAATAATTCGTTTACAAGAATTTTTATGTGGGTCAGATAAGCAACTAAATAAACGCAAAGCAAGACATACTTCTATTAATAAATAAAGTAATCTGAGATGAATTAACTGTCATATTAGTTAAATCAAATAACTTGTCTAAATTTAGAATTCGTTCATTCACTTGTTGTTCAATAATACTAG]

[+] EMBL CD160104             [CTTGTCACTACCTTGGCGATCAGTCAGATGATATTGAAGCAGAAAGTGAATACATTTCACAATAATTCGTTTACAAGAATTTTTATGTGGGTCAGATAAGCAACTAAATAAACGCAAAGCAAGACATACTTCTATTAATAAATAAAGTAATCTGAGATGAATTAACTGTCATATTAGTTAAATCAAATAACTTGTCTAAATTTAGAATTCGTTCATTCACTTGTTGTTCAATAATACTAG]




>consensus_5358#1
CTTGTCACTACCTTGGCGATCAGTCAGATGATATTGAAGCAGAAAGTGAATACATTTCAC
AATAATTCGTTTACAAGAATTTTTATGTGGGTCAGATAAGCAACTAAATAAACGCAAAGC
AAGACATACTTCTATTAATAAATAAAGTAATCTGAGATGAATTAACTGTCATATTAGTTA
AATCAAATAACTTGTCTAAATTTAGAATTCGTTCATTCACTTGTTGTTCAATAATACTAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5358#0      TCCGAATAAAATGATAATCTCACAAGATCTTTTAATATCTCTGTATCAGGTCGAAGATTT 60
consensus_5358#1      ------------------------------------------------------------
                                                                                  

consensus_5358#0      GGATCATTGAGAGAAATACTGCACAATTTCGGAAACCAAATAGATAGGCAAACTAACACA 120
consensus_5358#1      ------------------------------------------------------------
                                                                                  

consensus_5358#0      GCTGAAATTGGTTGTAGTGTCCAGAATTTCAAAAATGTAGAAGAGTGTGGATGTGAACAA 180
consensus_5358#1      ---------------------------------------------------------CTT 3
                                                                               *  

consensus_5358#0      TTCTCTATTACGGC-ATCAGTCAGATGATATTGAAGCAGAAAGTGAATACATTTCACAAT 239
consensus_5358#1      GTCACTACCTTGGCGATCAGTCAGATGATATTGAAGCAGAAAGTGAATACATTTCACAAT 63
                       ** ***    *** *********************************************

consensus_5358#0      AATTCGTTTACAAGAATTTTTATGTGGGTCAGATAAGCAACTAAATAAACGCAAAGCAAG 299
consensus_5358#1      AATTCGTTTACAAGAATTTTTATGTGGGTCAGATAAGCAACTAAATAAACGCAAAGCAAG 123
                      ************************************************************

consensus_5358#0      ACATACTTCTATTAATAAATAA-GTAATCTGAGATGAATTAACTGTCATATTAGTTAAAT 358
consensus_5358#1      ACATACTTCTATTAATAAATAAAGTAATCTGAGATGAATTAACTGTCATATTAGTTAAAT 183
                      ********************** *************************************

consensus_5358#0      CAAATAACTTGTCTAAATTTAGAATTCGTTCATTCACTTGTTGTTCAATAATACTAGTTG 418
consensus_5358#1      CAAATAACTTGTCTAAATTTAGAATTCGTTCATTCACTTGTTGTTCAATAATACTAG--- 240
                      *********************************************************   

consensus_5358#0      ATACCTTTGTAAACGATTTATTGGAATAGGGACATAATACCAAATTAATGGAACCAGACG 478
consensus_5358#1      ------------------------------------------------------------
                                                                                  

consensus_5358#0      TTTGAACTAATCAAATCTGTATTTGAATTCGTATAGATAAAGTTAA 524
consensus_5358#1      ----------------------------------------------