These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5371#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 485 fasta sequence [CACTAGTGATTAATAATTATGAGAATTAAATTTATCAATTAGTGTATTATTACCTAATATTTTAACCGAATTACGATCAGTTAACCGTTTACACTGCTTCACTCCCAAACATTTATTTTCATTTTGACATGAAATAATGTGTGGGAAACCATCATAACTACATTCAAACCGACTATAGTTATTTGTTACGCTTCAGTTCTATTCAACTTGTTATATGGGGATGTATTTTTGTTTGGACACTTCGCATTATCCGTTGTTCTTTAATCCAATTTTTTTGTGACTAACTTGATCTCGTGATATATTGAAATGTCTATTATCATCAAATCAGATAATATTTCGGAAAAAAATTATTTATTCAGATTTATTTATAGGTGTTGTGGTTGTTGTCGTAAAAATGTGTACTTCTATTTTCCGGTCATTGATATTTGTACATCGGCGACTCTTTTTTGTCTATGCTTAATTGGAGAATATTTTCTTATTTTATC] [+] EMBL CD190065 [CACTAGTGATTAATAATTATGAGAATTAAATTTATCAATTAGTGTATTATTACCTAATATTTTAACCGAATTACGATCAGTTAACCGTTTACACTGCTTCACTCCCAAACATTTATTTTCATTTTGACATGAAATAATGTGTGGGAAACCATCATAACTACATTCAAACCGACTATAGTTATTTGTTACGCTTCAGTTCTATTCAACTTGTTATATGGGGATGTATTTTTGTTTGGACACTTCGCATTATCCGTTGTTCTTTAATCCAATTTTTTTGTGACTAACTTGATCTCGTGATATATTGAAATGTCTATTATCATCAAATCAGATAATATTTCGGAAAAAAATTATTTATTCAGATTTATTTATAGGTGTTGTGGTTGTTGTCGTAAAAATGTGTACTTCTATTTTCCGGTCATTGATATTTGTACATCGGCGACTCTTTTTTGTCTATGCTTAATTGGAGAATATTTTCTTATTTTATC] consensusID : consensus_5371#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 465 fasta sequence [GTGTTGTATTGGTAGTATTCTGTGGTCTGATATTTTATTTAACTCAACATCCAAACTATCGTCGTATTGAAACAATGTCTCCAGAACATCGTGCACTACAAGAATAAATAAAAAATAATTATGTGAATTAAATTTATCAATTAATGTATTATTACCTAATATTTTAACCGAATTACGATCAGTTAACCGTTTTCACTGCTTCACTCCCAAACATTTATTTTCATTTTGTCATGAAATAATGTGTCTGAAACCATCATAACTACATTCAAACCGACTATAGTTATTTGTTACGCTTCAGTTCTATTCAACTTGTTATATGGTGATGTATTTTTGTTTGGTCACTTCGCATTATCCGTTGTTCTTTAATCCAATTTTTTTGTGACTAACTTGATCTCGTGATATATTGAAATGTCTATTATCATCAAATCAGATAATATTTCGGAAAAAAATTATTTATTCAGATTT] [-] EMBL CD112721 [GTGTTGTATTGGTAGTATTCTGTGGTCTGATATTTTATTTAACTCAACATCCAAACTATCGTCGTATTGAAACAATGTCTCCAGAACATCGTGCACTACAAGAATAAATAAAAAATAATTATGTGAATTAAATTTATCAATTAATGTATTATTACCTAATATTTTAACCGAATTACGATCAGTTAACCGTTTTCACTGCTTCACTCCCAAACATTTATTTTCATTTTGTCATGAAATAATGTGTCTGAAACCATCATAACTACATTCAAACCGACTATAGTTATTTGTTACGCTTCAGTTCTATTCAACTTGTTATATGGTGATGTATTTTTGTTTGGTCACTTCGCATTATCCGTTGTTCTTTAATCCAATTTTTTTGTGACTAACTTGATCTCGTGATATATTGAAATGTCTATTATCATCAAATCAGATAATATTTCGGAAAAAAATTATTTATTCAGATTT] [-] EMBL CD202562 [ AAACTATCGTCGTATTGAAACAATGTCTCCAGAACATCGTGCACTACAAGAATAAATAAAAAATAATTATGTGAATTAAATTTATCAATTAATGTATTATTACCTAATATTTTAACCGAATTACGATCAGTTAACCGTTTTCACTGCTTCACTCCCAAACATTTATTTTCATTTTGTCATGAAATAATGTGTCTGAAACCATCATAACTACATTCAAACCGACTATAGTTATTTGTTACGCTTCAGTTCTATTCAACTTGTTTTATGGTGATGTATTTTTGTTTGGTCACTTCGCATTATCCGTTGTTCTTTAATCCAATTTTTT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5371#0 ------------------------------------------------------------ consensus_5371#1 GTGTTGTATTGGTAGTATTCTGTGGTCTGATATTTTATTTAACTCAACATCCAAACTATC 60 consensus_5371#0 ------------------------------------------CACTAGTGATTAATAATT 18 consensus_5371#1 GTCGTATTGAAACAATGTCTCCAGAACATCGTGCACTACAAGAATAAATAAAAAATAATT 120 * * * * ******* consensus_5371#0 ATGAGAATTAAATTTATCAATTAGTGTATTATTACCTAATATTTTAACCGAATTACGATC 78 consensus_5371#1 ATGTGAATTAAATTTATCAATTAATGTATTATTACCTAATATTTTAACCGAATTACGATC 180 *** ******************* ************************************ consensus_5371#0 AGTTAACCGTTTACACTGCTTCACTCCCAAACATTTATTTTCATTTTGACATGAAATAAT 138 consensus_5371#1 AGTTAACCGTTTTCACTGCTTCACTCCCAAACATTTATTTTCATTTTGTCATGAAATAAT 240 ************ *********************************** *********** consensus_5371#0 GTGTGGGAAACCATCATAACTACATTCAAACCGACTATAGTTATTTGTTACGCTTCAGTT 198 consensus_5371#1 GTGTCTGAAACCATCATAACTACATTCAAACCGACTATAGTTATTTGTTACGCTTCAGTT 300 **** ****************************************************** consensus_5371#0 CTATTCAACTTGTTATATGGGGATGTATTTTTGTTTGGACACTTCGCATTATCCGTTGTT 258 consensus_5371#1 CTATTCAACTTGTTATATGGTGATGTATTTTTGTTTGGTCACTTCGCATTATCCGTTGTT 360 ******************** ***************** ********************* consensus_5371#0 CTTTAATCCAATTTTTTTGTGACTAACTTGATCTCGTGATATATTGAAATGTCTATTATC 318 consensus_5371#1 CTTTAATCCAATTTTTTTGTGACTAACTTGATCTCGTGATATATTGAAATGTCTATTATC 420 ************************************************************ consensus_5371#0 ATCAAATCAGATAATATTTCGGAAAAAAATTATTTATTCAGATTTATTTATAGGTGTTGT 378 consensus_5371#1 ATCAAATCAGATAATATTTCGGAAAAAAATTATTTATTCAGATTT--------------- 465 ********************************************* consensus_5371#0 GGTTGTTGTCGTAAAAATGTGTACTTCTATTTTCCGGTCATTGATATTTGTACATCGGCG 438 consensus_5371#1 ------------------------------------------------------------ consensus_5371#0 ACTCTTTTTTGTCTATGCTTAATTGGAGAATATTTTCTTATTTTATC 485 consensus_5371#1 ----------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||