cluster # 5376

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Schistosoma mansoni
cluster # 5376 cluster # 5376 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5376#0 length = 664 sequences # 1

consensus_5376#1 length = 639 sequences # 1
consensus_5376#2 length = 364 sequences # 1

consensusID : consensus_5376#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 664
fasta sequence

                              [ACAAAAGGAACCCTAATTAATAATTCACAAGTTATGAATCTACAATCATCATTACAATTACAAAAACTTGATATTACTTCACCATTTTATGAATCAGATGATAGTGAATTATTAGTTGTATTGGATCGTTTAATTTTATATTTAAGAATAGTACATTCAGTAGATTTTTATTCACCTGCATTTTATATGAATGAAGATTTAATGCCACATCCATGTCGTCTTATACATATTCGACCTGGTTTAAATGAAATTACTAAAGCTTTAACACAAATTAAAAATCCAGAAAAATTAATCAATTCAGAATTAGTTGATCATGTAAATATTTTATTGTATTATATTTTGTTTATCTATAGTATTAGTGTTAAATTCACAAAAGGTCTTTGTATAATAGTTATAGATATAGGAGGAAATTGTTGATAGTTGTTCTACATTTTTTGTGGAAGCGTTTGAGCTGTACACACAAACATAAGCAGCGATAACCAACTTGTTTAATGATCGAGTTGAATGTTGGATCACCTAACCCTTGATGATATCATAAAACTATTTATGATCAATCTCATTTTCCACTGTTGAGGAATTTTAATTGTAGTCAGTTTGCTCTATATCATATAATTCTATATGTGTCTCTGTACAGTATATTTAGTTTTGGCCCAGTTATAGTGTT]

[+] EMBL CD129443             [ACAAAAGGAACCCTAATTAATAATTCACAAGTTATGAATCTACAATCATCATTACAATTACAAAAACTTGATATTACTTCACCATTTTATGAATCAGATGATAGTGAATTATTAGTTGTATTGGATCGTTTAATTTTATATTTAAGAATAGTACATTCAGTAGATTTTTATTCACCTGCATTTTATATGAATGAAGATTTAATGCCACATCCATGTCGTCTTATACATATTCGACCTGGTTTAAATGAAATTACTAAAGCTTTAACACAAATTAAAAATCCAGAAAAATTAATCAATTCAGAATTAGTTGATCATGTAAATATTTTATTGTATTATATTTTGTTTATCTATAGTATTAGTGTTAAATTCACAAAAGGTCTTTGTATAATAGTTATAGATATAGGAGGAAATTGTTGATAGTTGTTCTACATTTTTTGTGGAAGCGTTTGAGCTGTACACACAAACATAAGCAGCGATAACCAACTTGTTTAATGATCGAGTTGAATGTTGGATCACCTAACCCTTGATGATATCATAAAACTATTTATGATCAATCTCATTTTCCACTGTTGAGGAATTTTAATTGTAGTCAGTTTGCTCTATATCATATAATTCTATATGTGTCTCTGTACAGTATATTTAGTTTTGGCCCAGTTATAGTGTT]




>consensus_5376#0
ACAAAAGGAACCCTAATTAATAATTCACAAGTTATGAATCTACAATCATCATTACAATTA
CAAAAACTTGATATTACTTCACCATTTTATGAATCAGATGATAGTGAATTATTAGTTGTA
TTGGATCGTTTAATTTTATATTTAAGAATAGTACATTCAGTAGATTTTTATTCACCTGCA
TTTTATATGAATGAAGATTTAATGCCACATCCATGTCGTCTTATACATATTCGACCTGGT
TTAAATGAAATTACTAAAGCTTTAACACAAATTAAAAATCCAGAAAAATTAATCAATTCA
GAATTAGTTGATCATGTAAATATTTTATTGTATTATATTTTGTTTATCTATAGTATTAGT
GTTAAATTCACAAAAGGTCTTTGTATAATAGTTATAGATATAGGAGGAAATTGTTGATAG
TTGTTCTACATTTTTTGTGGAAGCGTTTGAGCTGTACACACAAACATAAGCAGCGATAAC
CAACTTGTTTAATGATCGAGTTGAATGTTGGATCACCTAACCCTTGATGATATCATAAAA
CTATTTATGATCAATCTCATTTTCCACTGTTGAGGAATTTTAATTGTAGTCAGTTTGCTC
TATATCATATAATTCTATATGTGTCTCTGTACAGTATATTTAGTTTTGGCCCAGTTATAG
TGTT

consensusID : consensus_5376#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 639
fasta sequence

                              [TTTTCTGCAAGGTTTAACTGATTATCTTGTTGATGAGGGAAATGCTGAAGAAGAATTTCTTTTGTTAGGCGGTATGCAGTCCATTTCATTTCAACCATCTTCAATAACAAAAGGAACCCTAATTAATAATTCACAAGTTATGAATCTACAATCATCATTACAATTACAAAAACTTGATATTACTTCACCATTTTATGAATCAGATGATAGTGAATTATTAGTTGTATTGGATCGTTTAATTTTATATTTAAGAATAGTACATTCAGTAGATTTTTATTCACCTGCATTTTATATGAATGAAGATTTAATGCCACATCCATGTCGTCTTATACATATTCGACCTGGTTTAAATGAAATTACTAAAGCTTTAACACAAATTAAAAATCCAGAAAAATTAATCAATTCAGAATTAGTTGATCATTTATTTGCCAGTCAAATAAAACGTTTAGTACGACTCATTACTCCGCTCACGGAAAATGATTGTAAAAGTTTGGGTTATAGAAATGCAGATGATGTTGTGGAAGAATTCATAAAATTGAATACACGTCGGAAAAAACGAAAGGCCGATGTGATTTGGGTTTGCCCGTTGTCAATAAAAAGTTTCGAGATCCAATCTACGTTAAGAAACATATCCTGAAT]

[+] EMBL BF936449             [TTTTCTGCAAGGTTTAACTGATTATCTTGTTGATGAGGGAAATGCTGAAGAAGAATTTCTTTTGTTAGGCGGTATGCAGTCCATTTCATTTCAACCATCTTCAATAACAAAAGGAACCCTAATTAATAATTCACAAGTTATGAATCTACAATCATCATTACAATTACAAAAACTTGATATTACTTCACCATTTTATGAATCAGATGATAGTGAATTATTAGTTGTATTGGATCGTTTAATTTTATATTTAAGAATAGTACATTCAGTAGATTTTTATTCACCTGCATTTTATATGAATGAAGATTTAATGCCACATCCATGTCGTCTTATACATATTCGACCTGGTTTAAATGAAATTACTAAAGCTTTAACACAAATTAAAAATCCAGAAAAATTAATCAATTCAGAATTAGTTGATCATTTATTTGCCAGTCAAATAAAACGTTTAGTACGACTCATTACTCCGCTCACGGAAAATGATTGTAAAAGTTTGGGTTATAGAAATGCAGATGATGTTGTGGAAGAATTCATAAAATTGAATACACGTCGGAAAAAACGAAAGGCCGATGTGATTTGGGTTTGCCCGTTGTCAATAAAAAGTTTCGAGATCCAATCTACGTTAAGAAACATATCCTGAAT]




>consensus_5376#1
TTTTCTGCAAGGTTTAACTGATTATCTTGTTGATGAGGGAAATGCTGAAGAAGAATTTCT
TTTGTTAGGCGGTATGCAGTCCATTTCATTTCAACCATCTTCAATAACAAAAGGAACCCT
AATTAATAATTCACAAGTTATGAATCTACAATCATCATTACAATTACAAAAACTTGATAT
TACTTCACCATTTTATGAATCAGATGATAGTGAATTATTAGTTGTATTGGATCGTTTAAT
TTTATATTTAAGAATAGTACATTCAGTAGATTTTTATTCACCTGCATTTTATATGAATGA
AGATTTAATGCCACATCCATGTCGTCTTATACATATTCGACCTGGTTTAAATGAAATTAC
TAAAGCTTTAACACAAATTAAAAATCCAGAAAAATTAATCAATTCAGAATTAGTTGATCA
TTTATTTGCCAGTCAAATAAAACGTTTAGTACGACTCATTACTCCGCTCACGGAAAATGA
TTGTAAAAGTTTGGGTTATAGAAATGCAGATGATGTTGTGGAAGAATTCATAAAATTGAA
TACACGTCGGAAAAAACGAAAGGCCGATGTGATTTGGGTTTGCCCGTTGTCAATAAAAAG
TTTCGAGATCCAATCTACGTTAAGAAACATATCCTGAAT

consensusID : consensus_5376#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 364
fasta sequence

                              [TGATGGTTACGGTTACAAATGTATATGGATATTTTATTTTTTGCTAAAATTAATTAGCTCTCAAATTTTCCAAAATGTTATTTCTCCTACACAATCTAGTTATTTGCCAGTCAAATAAAACGTTTAGTACGACTCATTACTCCGCTCACGGAAAATGATTGTAAAAGTTTGGGTTATAGAAATGCAGATGATGTTGTGGAAGAATTCATAAAATTGAATACACGTCGGAAAAAACGAAAGGCGTATGTGTAAAGTTTATACAAATATGTATTGTTATTATTAATTATTTACTACAAAGTAGGTTTTTTATTATTTGATGGGTGAATTTTCGGTTGTTAAAAGGAGAAAAAATATGTTAATGGGT]

[+] EMBL CD187357             [TGATGGTTACGGTTACAAATGTATATGGATATTTTATTTTTTGCTAAAATTAATTAGCTCTCAAATTTTCCAAAATGTTATTTCTCCTACACAATCTAGTTATTTGCCAGTCAAATAAAACGTTTAGTACGACTCATTACTCCGCTCACGGAAAATGATTGTAAAAGTTTGGGTTATAGAAATGCAGATGATGTTGTGGAAGAATTCATAAAATTGAATACACGTCGGAAAAAACGAAAGGCGTATGTGTAAAGTTTATACAAATATGTATTGTTATTATTAATTATTTACTACAAAGTAGGTTTTTTATTATTTGATGGGTGAATTTTCGGTTGTTAAAAGGAGAAAAAATATGTTAATGGGT]




>consensus_5376#2
TGATGGTTACGGTTACAAATGTATATGGATATTTTATTTTTTGCTAAAATTAATTAGCTC
TCAAATTTTCCAAAATGTTATTTCTCCTACACAATCTAGTTATTTGCCAGTCAAATAAAA
CGTTTAGTACGACTCATTACTCCGCTCACGGAAAATGATTGTAAAAGTTTGGGTTATAGA
AATGCAGATGATGTTGTGGAAGAATTCATAAAATTGAATACACGTCGGAAAAAACGAAAG
GCGTATGTGTAAAGTTTATACAAATATGTATTGTTATTATTAATTATTTACTACAAAGTA
GGTTTTTTATTATTTGATGGGTGAATTTTCGGTTGTTAAAAGGAGAAAAAATATGTTAAT
GGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5376#0      ------------------------------------------------------------
consensus_5376#1      TTTTCTGCAAGGTTTAACTGATTATCTTGTTGATGAGGGAAATGCTGAAGAAGAATTTCT 60
consensus_5376#2      ------------------------------------------------------------
                                                                                  

consensus_5376#0      ----------------------------------------------ACAAAAGGAACCCT 14
consensus_5376#1      TTTGTTAGGCGGTATGCAGTCCATTTCATTTCAACCATCTTCAATAACAAAAGGAACCCT 120
consensus_5376#2      ------------------------------------------------------------
                                                                                  

consensus_5376#0      AATTAATAATTCACAAGTTATGAATCTACAATCATCATTACAATTACAAAAACTTGATAT 74
consensus_5376#1      AATTAATAATTCACAAGTTATGAATCTACAATCATCATTACAATTACAAAAACTTGATAT 180
consensus_5376#2      ------------------------------------------------------------
                                                                                  

consensus_5376#0      TACTTCACCATTTTATGAATCAGATGATAGTGAATTATTAGTTGTATTGGATCGTTTAAT 134
consensus_5376#1      TACTTCACCATTTTATGAATCAGATGATAGTGAATTATTAGTTGTATTGGATCGTTTAAT 240
consensus_5376#2      ------------------------------------------------------------
                                                                                  

consensus_5376#0      TTTATATTTAAGAATAGTACATTCAGTAGATTTTTATTCACCTGCATTTTATATGAATGA 194
consensus_5376#1      TTTATATTTAAGAATAGTACATTCAGTAGATTTTTATTCACCTGCATTTTATATGAATGA 300
consensus_5376#2      ------------------------------------------------------------
                                                                                  

consensus_5376#0      AGATTTAATGCCACATCCATGTCGTCTTATACATATTCGACCTGGTTTAAATGAAATTAC 254
consensus_5376#1      AGATTTAATGCCACATCCATGTCGTCTTATACATATTCGACCTGGTTTAAATGAAATTAC 360
consensus_5376#2      ----TGATGGTTACGGTTACAAATGTATATGGATATTTTATTT---TTTGCTAAAATTAA 53
                          * *  *  **    *        ***  *****  *  *   **   * ****** 

consensus_5376#0      TAAAGCTTTAACACAAATTAAAAATCCAGAAAAATTAATCAATTCAGAATTAGTTGATCA 314
consensus_5376#1      TAAAGCTTTAACACAAATTAAAAATCCAGAAAAATTAATCAATTCAGAATTAGTTGATCA 420
consensus_5376#2      TTA-GCTCT----CAAATT-----TTCCAAAATGTTATTTCTCCTACA------CAATCT 97
                      * * *** *    ******     * *  ***  *** *      * *        *** 

consensus_5376#0      TGTAAATATTTTATTGTATTATATTTTGTTTATCTATAGTATTAGTGTTAAATTCACAAA 374
consensus_5376#1      TTT----ATTTGCCAGTCAAATAAAACGTTTAG-TACGAC-TCATTACTCCGCTCACGGA 474
consensus_5376#2      AGT---TATTTGCCAGTCAAATAAAACGTTTAG-TACGAC-TCATTACTCCGCTCACGGA 152
                        *    ****    **   ***    *****  **     * * *  *    ****  *

consensus_5376#0      AGGTCTTTGTATAATAGTTATAGATATAGGAGGAAATTGTTGATAGTTGTTCTACATTTT 434
consensus_5376#1      AAATGATTGTAAAA--GTTTGGGTTATAGAAA-----TGCAGATGATGTTGTGGAAGAAT 527
consensus_5376#2      AAATGATTGTAAAA--GTTTGGGTTATAGAAA-----TGCAGATGATGTTGTGGAAGAAT 205
                      *  *  ***** **  ***   * ***** *      **  ***  *  *     *   *

consensus_5376#0      TTGTGGAAGCGTTTGAGCTGTACACACAAACATAAGCAGCGATAACC--AACTTGTTTAA 492
consensus_5376#1      TCATAAAATTGAATACACGTCGGAAAAAACGAAAGGCCGATGTGATTTGGGTTTGCCCGT 587
consensus_5376#2      TCATAAAATTGAATACACGTCGGAAAAAACGAAAGGCGTATGTGTAA--AGTTTATACAA 263
                      *  *  **  *  *   *     * * **  * * **     *         **      

consensus_5376#0      TGATCGAGTTGAATGTTGGATCACCTAACCCTTGATGATATCATAAAACTATTTATGATC 552
consensus_5376#1      TGTC--AATAAAAAGTTTCGAGATCCAATCT------ACGTTAAGAAACATATCCTGAAT 639
consensus_5376#2      ATATGTATTGTTATTATTAATTATTTACTACAAAGT-AGGTTTTTTATTATTTGATGGGT 322
                            * *   *   *     *   *          *  *     *     *  **   

consensus_5376#0      AATCTCATTTTCCACTGTTGAGGAATTTTAATTGTAGTCAGTTTGCTCTATATCATATAA 612
consensus_5376#1      ------------------------------------------------------------
consensus_5376#2      GA----ATTTTCGGTTGTTAAAAGGAGAAAAAATATGTTAATGGGT-------------- 364
                                                                                  

consensus_5376#0      TTCTATATGTGTCTCTGTACAGTATATTTAGTTTTGGCCCAGTTATAGTGTT 664
consensus_5376#1      ----------------------------------------------------
consensus_5376#2      ----------------------------------------------------