cluster # 5390

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Schistosoma mansoni
cluster # 5390 cluster # 5390 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5390#0 length = 632 sequences # 2

consensus_5390#1 length = 454 sequences # 1

consensusID : consensus_5390#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 632
fasta sequence

                              [TTTACCAATACACAAACGAACTATGGTTTCAGCACCCTCTGCATCGGTTGAAAGGCAAGCTAGAAAATGCCTAGTCACCAATTCATAAAGACGTGCTTCATCACCCTGAAGTGAATCGCCCACTTTTAACGGGTGTATAGGTGGATGAGCCTTATCACTTGACTTTCCGTTCTTAGGATTAGGACCACGCTCAAGGATTCTGGTAGCAACATCAGACCATCGAGAATCATTTATTTGAACGTGCACTAGGCTTTTAAGATCCAAATCCGGCGGGAATATTTTAGTTTCTGTACGAGGATATGAAATAAAGCCTTTGTTATAAAGACGCTCAGCCAACTGCATTGCATATTTAGCTCCCATTTGTAACTTGCGAGAGGCCAATTTCTCCAATTCTACTGTATCCAAAGCAGTTGGACGCCATTTGGTTTTCGGACGCTTAATAACTTCTACAATTTGACCATAGCGATTCTGGTTGAAAAATTAAAAAAACAAACCACACAATGAACAATAAAATGTTTTGGAATCTGTTAACAATGTCGAAATATTGGTGGTCTCAGTACAATCTTAACTACCCCTATACGCAACCTTTGTAAATGATAAATCCCTTAATTAAGGAAACCCTAAAAGATTAG]

[-] EMBL CD117798             [TTTACCAATACACAAACGAACTATGGTTTCAGCACCCTCTGCATCGGTTGAAAGGCAAGCTAGAAAATGCCTAGTCACCAATTCATAAAGACGTGCTTCATCACCCTGAAGTGAATCGCCCACTTTTAACGGGTGTATAGGTGGATGAGCCTTATCACTTGACTTTCCGTTCTTAGGATTAGGACCACGCTCAAGGATTCTGGTAGCAACATCAGACCATCGAGAATCAT                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CD062165             [                   ACTATGGTTTCAGCACCCTCTGCATCGGTTGAAAGGCAAGCTAGAAAATGCCTAGTCACCAATTCATAAAGACGTGCTTCATCACCCTGAAGTGAATCGCCCACTTTTAACGGGTGTATAGGTGGATGAGCCTTATCACTTGACTTTCCGTTCTTAGGATTAGGACCACGCTCAAGGATTCTGGTAGCAAAATCAGACCATCGAGAATCATTTATTTGAACGTGCACTAGGCTTTTAAGATCCAAATCCGGCGGGAATATTTTAGTTTCTGTACGAGGATATGAAATAAAGCCTTTGTTATAAAGACGCTCAGCCAACTGCATTGCATATTTAGCTCCCATTTGTAACTTGCGAGAGGCCAATTTCTCCAATTCTACTGTATCCAAAGCAGTTGGACGCCATTTGGTTTTCGGACGCTTAATAACTTCTACAATTTGACCATAGCGATTCTGGTTGAAAAATTAAAAAAACAAACCACACAATGAACAATAAAATGTTTTGGAATCTGTTAACAATGTCGAAATATTGGTGGTCTCAGTACAATCTTAACTACCCCTATACGCAACCTTTGTAAATGATAAATCCCTTAATTAAGGAAACCCTAAAAGATTAG]




>consensus_5390#0
TTTACCAATACACAAACGAACTATGGTTTCAGCACCCTCTGCATCGGTTGAAAGGCAAGC
TAGAAAATGCCTAGTCACCAATTCATAAAGACGTGCTTCATCACCCTGAAGTGAATCGCC
CACTTTTAACGGGTGTATAGGTGGATGAGCCTTATCACTTGACTTTCCGTTCTTAGGATT
AGGACCACGCTCAAGGATTCTGGTAGCAACATCAGACCATCGAGAATCATTTATTTGAAC
GTGCACTAGGCTTTTAAGATCCAAATCCGGCGGGAATATTTTAGTTTCTGTACGAGGATA
TGAAATAAAGCCTTTGTTATAAAGACGCTCAGCCAACTGCATTGCATATTTAGCTCCCAT
TTGTAACTTGCGAGAGGCCAATTTCTCCAATTCTACTGTATCCAAAGCAGTTGGACGCCA
TTTGGTTTTCGGACGCTTAATAACTTCTACAATTTGACCATAGCGATTCTGGTTGAAAAA
TTAAAAAAACAAACCACACAATGAACAATAAAATGTTTTGGAATCTGTTAACAATGTCGA
AATATTGGTGGTCTCAGTACAATCTTAACTACCCCTATACGCAACCTTTGTAAATGATAA
ATCCCTTAATTAAGGAAACCCTAAAAGATTAG

consensusID : consensus_5390#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 454
fasta sequence

                              [TATTTGAACGTGCACTAGGCTTTTAAGATCCAAATCCGGCGGGAATATTTTAGTTTCTGTACGAGGATATGAAATAAAGCCTTTGTTATAAAGACGCTCAGCCAACTGCATTGCATATTTAGCTCCCATTTGTAACTTGCGAGAGGCCAATTTCTCCAATTCTACTGTATCCAAAGCAGTTGGACGCCATTTGGTTTTCGGACGCTTAATAACTTCTACAATTTGATCATAGCGATTTTGATTTAAATGTTCATAGTATGCTCTGCAACAATCTTGATCGAAAAGACGTCCACGTTGCCACTGAAATTCAGTTGTTTTCTCGTCGCGTGACACAGTGACCACAATACGCCAAAATGGTTCAGAAACAAACTGATCAACCTCTCGAAAGCGTTCTACAACAAAACCAAGAGTTGGAAACTGACAAGATCCATACGAGATCAACTGGTCACTAAGA]

[-] EMBL CD098342             [TATTTGAACGTGCACTAGGCTTTTAAGATCCAAATCCGGCGGGAATATTTTAGTTTCTGTACGAGGATATGAAATAAAGCCTTTGTTATAAAGACGCTCAGCCAACTGCATTGCATATTTAGCTCCCATTTGTAACTTGCGAGAGGCCAATTTCTCCAATTCTACTGTATCCAAAGCAGTTGGACGCCATTTGGTTTTCGGACGCTTAATAACTTCTACAATTTGATCATAGCGATTTTGATTTAAATGTTCATAGTATGCTCTGCAACAATCTTGATCGAAAAGACGTCCACGTTGCCACTGAAATTCAGTTGTTTTCTCGTCGCGTGACACAGTGACCACAATACGCCAAAATGGTTCAGAAACAAACTGATCAACCTCTCGAAAGCGTTCTACAACAAAACCAAGAGTTGGAAACTGACAAGATCCATACGAGATCAACTGGTCACTAAGA]




>consensus_5390#1
TATTTGAACGTGCACTAGGCTTTTAAGATCCAAATCCGGCGGGAATATTTTAGTTTCTGT
ACGAGGATATGAAATAAAGCCTTTGTTATAAAGACGCTCAGCCAACTGCATTGCATATTT
AGCTCCCATTTGTAACTTGCGAGAGGCCAATTTCTCCAATTCTACTGTATCCAAAGCAGT
TGGACGCCATTTGGTTTTCGGACGCTTAATAACTTCTACAATTTGATCATAGCGATTTTG
ATTTAAATGTTCATAGTATGCTCTGCAACAATCTTGATCGAAAAGACGTCCACGTTGCCA
CTGAAATTCAGTTGTTTTCTCGTCGCGTGACACAGTGACCACAATACGCCAAAATGGTTC
AGAAACAAACTGATCAACCTCTCGAAAGCGTTCTACAACAAAACCAAGAGTTGGAAACTG
ACAAGATCCATACGAGATCAACTGGTCACTAAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5390#0      TTTACCAATACACAAACGAACTATGGTTTCAGCACCCTCTGCATCGGTTGAAAGGCAAGC 60
consensus_5390#1      ------------------------------------------------------------
                                                                                  

consensus_5390#0      TAGAAAATGCCTAGTCACCAATTCATAAAGACGTGCTTCATCACCCTGAAGTGAATCGCC 120
consensus_5390#1      ------------------------------------------------------------
                                                                                  

consensus_5390#0      CACTTTTAACGGGTGTATAGGTGGATGAGCCTTATCACTTGACTTTCCGTTCTTAGGATT 180
consensus_5390#1      ------------------------------------------------------------
                                                                                  

consensus_5390#0      AGGACCACGCTCAAGGATTCTGGTAGCAACATCAGACCATCGAGAATCATTTATTTGAAC 240
consensus_5390#1      ---------------------------------------------------TATTTGAAC 9
                                                                         *********

consensus_5390#0      GTGCACTAGGCTTTTAAGATCCAAATCCGGCGGGAATATTTTAGTTTCTGTACGAGGATA 300
consensus_5390#1      GTGCACTAGGCTTTTAAGATCCAAATCCGGCGGGAATATTTTAGTTTCTGTACGAGGATA 69
                      ************************************************************

consensus_5390#0      TGAAATAAAGCCTTTGTTATAAAGACGCTCAGCCAACTGCATTGCATATTTAGCTCCCAT 360
consensus_5390#1      TGAAATAAAGCCTTTGTTATAAAGACGCTCAGCCAACTGCATTGCATATTTAGCTCCCAT 129
                      ************************************************************

consensus_5390#0      TTGTAACTTGCGAGAGGCCAATTTCTCCAATTCTACTGTATCCAAAGCAGTTGGACGCCA 420
consensus_5390#1      TTGTAACTTGCGAGAGGCCAATTTCTCCAATTCTACTGTATCCAAAGCAGTTGGACGCCA 189
                      ************************************************************

consensus_5390#0      TTTGGTTTTCGGACGCTTAATAACTTCTACAATTTGACCATAGCGATTCTGGTTGAAAAA 480
consensus_5390#1      TTTGGTTTTCGGACGCTTAATAACTTCTACAATTTGATCATAGCGATTTTGATTTAAATG 249
                      ************************************* ********** ** ** ***  

consensus_5390#0      TTAAAAAAACAAACCACA-CAAT---GAACAATAAAATGTTTTGGAATCTGTTAACAAT- 535
consensus_5390#1      TTCATAGTATGCTCTGCAACAATCTTGATCGAAAAGACGTCCACGTTGCCACTGAAATTC 309
                      ** * *  *    *  ** ****   ** * * ** * **    *   *   * * * * 

consensus_5390#0      -GTCGAAATATTGGTG-GTCTCAGTACAATCTTAACTACCCCTATACGCAACCTTTGTAA 593
consensus_5390#1      AGTTGTTTTCTCGTCGCGTGACACAGTGACCACAA-TACGCCAAAATGGTTCAGAAACAA 368
                       ** *   * * *  * **  **     * *  ** *** ** * * *   *      **

consensus_5390#0      A-TGATAAATCCCTTAA-------TTAAGGAAACCCTAAAAGATTAG------------- 632
consensus_5390#1      ACTGATCAACCTCTCGAAAGCGTTCTACAACAAAACCAAGAGTTGGAAACTGACAAGATC 428
                      * **** ** * **  *        **    **  * ** ** *                

consensus_5390#0      --------------------------
consensus_5390#1      CATACGAGATCAACTGGTCACTAAGA 454