These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5390#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 632 fasta sequence [TTTACCAATACACAAACGAACTATGGTTTCAGCACCCTCTGCATCGGTTGAAAGGCAAGCTAGAAAATGCCTAGTCACCAATTCATAAAGACGTGCTTCATCACCCTGAAGTGAATCGCCCACTTTTAACGGGTGTATAGGTGGATGAGCCTTATCACTTGACTTTCCGTTCTTAGGATTAGGACCACGCTCAAGGATTCTGGTAGCAACATCAGACCATCGAGAATCATTTATTTGAACGTGCACTAGGCTTTTAAGATCCAAATCCGGCGGGAATATTTTAGTTTCTGTACGAGGATATGAAATAAAGCCTTTGTTATAAAGACGCTCAGCCAACTGCATTGCATATTTAGCTCCCATTTGTAACTTGCGAGAGGCCAATTTCTCCAATTCTACTGTATCCAAAGCAGTTGGACGCCATTTGGTTTTCGGACGCTTAATAACTTCTACAATTTGACCATAGCGATTCTGGTTGAAAAATTAAAAAAACAAACCACACAATGAACAATAAAATGTTTTGGAATCTGTTAACAATGTCGAAATATTGGTGGTCTCAGTACAATCTTAACTACCCCTATACGCAACCTTTGTAAATGATAAATCCCTTAATTAAGGAAACCCTAAAAGATTAG] [-] EMBL CD117798 [TTTACCAATACACAAACGAACTATGGTTTCAGCACCCTCTGCATCGGTTGAAAGGCAAGCTAGAAAATGCCTAGTCACCAATTCATAAAGACGTGCTTCATCACCCTGAAGTGAATCGCCCACTTTTAACGGGTGTATAGGTGGATGAGCCTTATCACTTGACTTTCCGTTCTTAGGATTAGGACCACGCTCAAGGATTCTGGTAGCAACATCAGACCATCGAGAATCAT ] [+] EMBL CD062165 [ ACTATGGTTTCAGCACCCTCTGCATCGGTTGAAAGGCAAGCTAGAAAATGCCTAGTCACCAATTCATAAAGACGTGCTTCATCACCCTGAAGTGAATCGCCCACTTTTAACGGGTGTATAGGTGGATGAGCCTTATCACTTGACTTTCCGTTCTTAGGATTAGGACCACGCTCAAGGATTCTGGTAGCAAAATCAGACCATCGAGAATCATTTATTTGAACGTGCACTAGGCTTTTAAGATCCAAATCCGGCGGGAATATTTTAGTTTCTGTACGAGGATATGAAATAAAGCCTTTGTTATAAAGACGCTCAGCCAACTGCATTGCATATTTAGCTCCCATTTGTAACTTGCGAGAGGCCAATTTCTCCAATTCTACTGTATCCAAAGCAGTTGGACGCCATTTGGTTTTCGGACGCTTAATAACTTCTACAATTTGACCATAGCGATTCTGGTTGAAAAATTAAAAAAACAAACCACACAATGAACAATAAAATGTTTTGGAATCTGTTAACAATGTCGAAATATTGGTGGTCTCAGTACAATCTTAACTACCCCTATACGCAACCTTTGTAAATGATAAATCCCTTAATTAAGGAAACCCTAAAAGATTAG] consensusID : consensus_5390#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 454 fasta sequence [TATTTGAACGTGCACTAGGCTTTTAAGATCCAAATCCGGCGGGAATATTTTAGTTTCTGTACGAGGATATGAAATAAAGCCTTTGTTATAAAGACGCTCAGCCAACTGCATTGCATATTTAGCTCCCATTTGTAACTTGCGAGAGGCCAATTTCTCCAATTCTACTGTATCCAAAGCAGTTGGACGCCATTTGGTTTTCGGACGCTTAATAACTTCTACAATTTGATCATAGCGATTTTGATTTAAATGTTCATAGTATGCTCTGCAACAATCTTGATCGAAAAGACGTCCACGTTGCCACTGAAATTCAGTTGTTTTCTCGTCGCGTGACACAGTGACCACAATACGCCAAAATGGTTCAGAAACAAACTGATCAACCTCTCGAAAGCGTTCTACAACAAAACCAAGAGTTGGAAACTGACAAGATCCATACGAGATCAACTGGTCACTAAGA] [-] EMBL CD098342 [TATTTGAACGTGCACTAGGCTTTTAAGATCCAAATCCGGCGGGAATATTTTAGTTTCTGTACGAGGATATGAAATAAAGCCTTTGTTATAAAGACGCTCAGCCAACTGCATTGCATATTTAGCTCCCATTTGTAACTTGCGAGAGGCCAATTTCTCCAATTCTACTGTATCCAAAGCAGTTGGACGCCATTTGGTTTTCGGACGCTTAATAACTTCTACAATTTGATCATAGCGATTTTGATTTAAATGTTCATAGTATGCTCTGCAACAATCTTGATCGAAAAGACGTCCACGTTGCCACTGAAATTCAGTTGTTTTCTCGTCGCGTGACACAGTGACCACAATACGCCAAAATGGTTCAGAAACAAACTGATCAACCTCTCGAAAGCGTTCTACAACAAAACCAAGAGTTGGAAACTGACAAGATCCATACGAGATCAACTGGTCACTAAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5390#0 TTTACCAATACACAAACGAACTATGGTTTCAGCACCCTCTGCATCGGTTGAAAGGCAAGC 60 consensus_5390#1 ------------------------------------------------------------ consensus_5390#0 TAGAAAATGCCTAGTCACCAATTCATAAAGACGTGCTTCATCACCCTGAAGTGAATCGCC 120 consensus_5390#1 ------------------------------------------------------------ consensus_5390#0 CACTTTTAACGGGTGTATAGGTGGATGAGCCTTATCACTTGACTTTCCGTTCTTAGGATT 180 consensus_5390#1 ------------------------------------------------------------ consensus_5390#0 AGGACCACGCTCAAGGATTCTGGTAGCAACATCAGACCATCGAGAATCATTTATTTGAAC 240 consensus_5390#1 ---------------------------------------------------TATTTGAAC 9 ********* consensus_5390#0 GTGCACTAGGCTTTTAAGATCCAAATCCGGCGGGAATATTTTAGTTTCTGTACGAGGATA 300 consensus_5390#1 GTGCACTAGGCTTTTAAGATCCAAATCCGGCGGGAATATTTTAGTTTCTGTACGAGGATA 69 ************************************************************ consensus_5390#0 TGAAATAAAGCCTTTGTTATAAAGACGCTCAGCCAACTGCATTGCATATTTAGCTCCCAT 360 consensus_5390#1 TGAAATAAAGCCTTTGTTATAAAGACGCTCAGCCAACTGCATTGCATATTTAGCTCCCAT 129 ************************************************************ consensus_5390#0 TTGTAACTTGCGAGAGGCCAATTTCTCCAATTCTACTGTATCCAAAGCAGTTGGACGCCA 420 consensus_5390#1 TTGTAACTTGCGAGAGGCCAATTTCTCCAATTCTACTGTATCCAAAGCAGTTGGACGCCA 189 ************************************************************ consensus_5390#0 TTTGGTTTTCGGACGCTTAATAACTTCTACAATTTGACCATAGCGATTCTGGTTGAAAAA 480 consensus_5390#1 TTTGGTTTTCGGACGCTTAATAACTTCTACAATTTGATCATAGCGATTTTGATTTAAATG 249 ************************************* ********** ** ** *** consensus_5390#0 TTAAAAAAACAAACCACA-CAAT---GAACAATAAAATGTTTTGGAATCTGTTAACAAT- 535 consensus_5390#1 TTCATAGTATGCTCTGCAACAATCTTGATCGAAAAGACGTCCACGTTGCCACTGAAATTC 309 ** * * * * ** **** ** * * ** * ** * * * * * * consensus_5390#0 -GTCGAAATATTGGTG-GTCTCAGTACAATCTTAACTACCCCTATACGCAACCTTTGTAA 593 consensus_5390#1 AGTTGTTTTCTCGTCGCGTGACACAGTGACCACAA-TACGCCAAAATGGTTCAGAAACAA 368 ** * * * * * ** ** * * ** *** ** * * * * ** consensus_5390#0 A-TGATAAATCCCTTAA-------TTAAGGAAACCCTAAAAGATTAG------------- 632 consensus_5390#1 ACTGATCAACCTCTCGAAAGCGTTCTACAACAAAACCAAGAGTTGGAAACTGACAAGATC 428 * **** ** * ** * ** ** * ** ** * consensus_5390#0 -------------------------- consensus_5390#1 CATACGAGATCAACTGGTCACTAAGA 454 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||