These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5391#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1065 fasta sequence [CAGNAATTCGGCACGAGGGCGAATCATGAATAGTAATACANGTGAAACCAGAATTTTGTGATAGTTCAATTGCATTAGCTGATGAACCAAGCTTATCCGATCAAAGTGAATATCATGAATTATGTAGCGAAAATGAATTCATTAAAAATAATCATACAACATGTGATTTATTATATGATAACAAAGAAGAAATGTTTAAACTTCGTAAACTATTTCATTTTGCTGCTGGTATTGTATATTCATCTGGCTTACTCTATTCACCTCATCTTCTTTCATTAATGTCTGTTGCATTACTTATTGTATTTTGGTGTTTTGAATGGATTCGAAGACGAGGGCCATCTACTCTTTCCTCCTACCTTAGTACTTTGGTTGATCCATTTCGTGATAAACGAGATTCTGGTGATATTTTATTCACACCTATTGCTCTTTTACTCGGTTTAAGTATTCCTGTTTGGTGGCCACAAAATAGAAATACTAATAGAAGTATGATTAGTATTGATTGATTGAAGATGGACGAACCCATTGTATTCCGGCTTGATTATTCAATCACCGAAACTGTTTTATGTTCACAGAACTGTTTAAAATTATCATTTAAATATAGATAAGGCAACCTATGCTACGAATTGGATGTGAAGCCGTCATCATGGTCAGGCGTTCTGTCAATAGCTGTAGGCGATAGTTNTGCTGCATTGATTGGACGAGCTTACGGAAAGCGTCGTTGGCCTGGATCACATCGAACATTCCTAGGATCTTTCGCTTCTTTCTTTTCTCAAATTATTGTATGGACAGTGATATCATATTATTATTCATGGCATTGGTTAACCGGTATTATTCCTTTATTAATCGGTGTACTTATTGAAGCATATATTGATCAAATTNGATATTTAGTTATACCATTAATTTGTATGCTCATGTTTATAGTTTGTACAATGATACTCTTTTACTATGGGATGATGTACTTGCTAGATTCCTTATTTCACTACTTGGNGATGTTGTTATTTGCTGCTGGACTATCATGAGTTGTTTACTATGTAGGCTATATGTCGCTATTGACATAATGTATGA] [+] EMBL CD081558 [CAGNAATTCGGCACGAGGGCGAATCATGAATAGTAATACANGTGAAACCAGAATTTTGTGATAGTTCAATTGCATTAGCTGATGAACCAAGCTTATCCGATCAAAGTGAATATCATGAATTATGTAGCGAAAATGAATTCATTAAAAATAATCATACAACATGTGATTTATTATATGATAACAAAGAAGAAATGTTTAAACTTCGTAAACTATTTCATTTTGCTGCTGGTATTGTATATTCATCTGGCTTACTCTATTCACCTCATCTTCTTTCATTAATGTCTGTTGCATTACTTATTGTATTTTGGTGTTTTGAATGGATTCGAAGACGAGGGCCATCTACTCTTTCCTCCTACCTTAGTACTTTGGTTGATCCATTTCGTGATAAACGAGATTCTGGTGATATTTTATTCACACCTATTGCTCTTTTACTCGGTTTAAGTATTCCTGTTTGGTGGCCACAAAATAGAAATACTAATAGAAGTATGATTAGTATTGATTGATTGAAGATGGACGAACCCATTGTATTCCGGCTTGATTATTCAATCACCGAAACTGTTTTATGTTCACAGAACTGTTTAAAATTATCATTTAAATATAGATAAGGCAACCTATGCTACGAATTGGATGTGAAGCCGTCATCATGGTCAGGCGTTCTGTCAATAGCTGTAGGCGATAGTTNTGCTGCATTGATTGGACGAGCTTACGGAAAGCGTCGTTGGCCTGGATCACATCGAACATTCCTAGGATCTTTCGCTTCTTTCTTTTCTCAAATTATTGTATGGACAGTGATATCATATTATTATTCATGGCATTGGTTAACCGGTATTATTCCTTTATTAATCGGTGTACTTATTGAAGCATATATTGATCAAATTNGATATTTAGTTATACCATTAATTTGTATGCTCATGTTTATAGTTTGTACAATGATACTCTTTTACTATGGGATGATGTACTTGCTAGATTCCTTATTTCACTACTTGGNGATGTTGTTATTTGCTGCTGGACTATCATGAGTTGTTTACTATGTAGGCTATATGTCGCTATTGACATAATGTATGA] consensusID : consensus_5391#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 518 fasta sequence [TAGATAAGGCAACCTATGCTACGAATTGGATGTGAAGCCGTCATCATGGTCAGGCGTTCTGTCAATAGCTGTAGGCGATAGTTTTGCTGCATTGATTGGACGAGCTTACGGAAAGCGTCGTTGGCCTGGATCACATCGAACATTCCTAGGATCTTTCGCTTCTTTCTTTTCTCAAATTATTGTATGGACAGTGATATCATATTATTATTCATGGCATTGGTTAACCGGTATTATTCCTTTATTAATCGGTGTACTTATTGAAGCATATATTGATCAAATTGATAATTTAGTTATACCATTAATTGTTATGCTCATGTTTCATAGTTTGTAACAATGATACTCTTTTAACTATGGATTGTATGTACTTGCTTAGATTCCTTTATTTTCTACTACATTTGGTGTATGTTTGTTTATTTGCTTGCTTGTGTACATAATCAATTGATGTTTGTTTTTAACTATTGTTAAGGCCTAGTAATTGTTCGCTTATTTTGAGCAATAAAATGTTAATGAACGAAGTC] [-] EMBL CD075384 [TAGATAAGGCAACCTATGCTACGAATTGGATGTGAAGCCGTCATCATGGTCAGGCGTTCTGTCAATAGCTGTAGGCGATAGTTTTGCTGCATTGATTGGACGAGCTTACGGAAAGCGTCGTTGGCCTGGATCACATCGAACATTCCTAGGATCTTTCGCTTCTTTCTTTTCTCAAATTATTGTATGGACAGTGATATCATATTATTATTCATGGCATTGGTTAACCGGTATTATTCCTTTATTAATCGGTGTACTTATTGAAGCATATATTGATCAAATTGATAATTTAGTTATACCATTAATTGTTATGCTCATGTTTCATAGTTTGTAACAATGATACTCTTTTAACTATGGATTGTATGTACTTGCTTAGATTCCTTTATTTTCTACTACATTTGGTGTATGTTTGTTTATTTGCTTGCTTGTGTACATAATCAATTGATGTTTGTTTTTAACTATTGTTAAGGCCTAGTAATTGTTCGCTTATTTTGAGCAATAAAATGTTAATGAACGAAGTC] consensusID : consensus_5391#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 250 fasta sequence [GAATTCGGCACGAGGTTCATTTTATTGATGTTTTGGCTATGCTTATTTATGTTATGTGTTTATATTACTATCATTTATCGTTGTTCTAATCATAACATTTACCGAATCATGAATAGTAATACAGTGAAACCAGAATTTTGTGATAGTTCAATTGCATTAGCTGATGAACCAAGCTTATCCGATCAAAGTGAATATCATGAATTATGTAGCGAAAATGATTCATTAAAATAATCATACGACATGTGATTTA] [+] EMBL CD077488 [GAATTCGGCACGAGGTTCATTTTATTGATGTTTTGGCTATGCTTATTTATGTTATGTGTTTATATTACTATCATTTATCGTTGTTCTAATCATAACATTTACCGAATCATGAATAGTAATACAGTGAAACCAGAATTTTGTGATAGTTCAATTGCATTAGCTGATGAACCAAGCTTATCCGATCAAAGTGAATATCATGAATTATGTAGCGAAAATGATTCATTAAAATAATCATACGACATGTGATTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5391#0 CAGNAATTCGGCACGAGGGCGAATCATGAATAGTAATACANGTGAAACCAGAATTTTGTG 60 consensus_5391#1 ------------------------------------------------------------ consensus_5391#2 ------------------------------------------------------------ consensus_5391#0 ATAGTTCAATTGCATTAGCTGATGAACCAAGCTTATCCGATCAAAGTGAATATCATGAAT 120 consensus_5391#1 ------------------------------------------------------------ consensus_5391#2 ------------------------------------------------------------ consensus_5391#0 TATGTAGCGAAAATGAATTCATTAAAAATAATCATACAACATGTGATTTATTATATGATA 180 consensus_5391#1 ------------------------------------------------------------ consensus_5391#2 ------------------------------------------------------------ consensus_5391#0 ACAAAGAAGAAATGTTTAAACTTCGTAAACTATTTCATTTTGCTGCTGGTATTGTATATT 240 consensus_5391#1 ------------------------------------------------------------ consensus_5391#2 ------------------------------------------------------------ consensus_5391#0 CATCTGGCTTACTCTATTCACCTCATCTTCTTTCATTAATGTCTGTTGCATTACTTATTG 300 consensus_5391#1 ------------------------------------------------------------ consensus_5391#2 ------------------------------------------------------------ consensus_5391#0 TATTTTGGTGTTTTGAATGGATTCGAAGACGAGGGCCATCTACTCTTTCCTCCTACCTTA 360 consensus_5391#1 ------------------------------------------------------------ consensus_5391#2 ------------------------------------------------------------ consensus_5391#0 GTACTTTGGTTGATCCATTTCGTGATAAACGAGATTCTGGTGATATTTTATTCACACCTA 420 consensus_5391#1 ------------------------------------------------------------ consensus_5391#2 ------------------------------------------------------------ consensus_5391#0 TTGCTCTTTTACTCGGTTTAAGTATTCCTGTTTGGTGGCCACAAAATAGAAATACTAATA 480 consensus_5391#1 ------------------------------------------------------------ consensus_5391#2 ------------------------------------------------------------ consensus_5391#0 GAAGTATGATTAGTATTGATTGATTGAAGATGGACGAACCCATTGTATTCCGGCTTGATT 540 consensus_5391#1 ------------------------------------------------------------ consensus_5391#2 ------------------------------------------------------------ consensus_5391#0 ATTCAATCACCGAAACTGTTTTATGTTCACAGAACTGTTTAAAATTATCATTTAAATATA 600 consensus_5391#1 ----------------------------------------------------------TA 2 consensus_5391#2 ------------------------------------------------------------ consensus_5391#0 GATAAGGCAACCTATGCTACGAATTGGATGTGAAGCCGTCATCATGGTCAGGCGTTCTGT 660 consensus_5391#1 GATAAGGCAACCTATGCTACGAATTGGATGTGAAGCCGTCATCATGGTCAGGCGTTCTGT 62 consensus_5391#2 ------------------------------------------------------------ consensus_5391#0 CAATAGCTGTAGGCGATAGTTNTGCTGCATTGATTGGACGAGCTTACGGAAAGCGTCGTT 720 consensus_5391#1 CAATAGCTGTAGGCGATAGTTTTGCTGCATTGATTGGACGAGCTTACGGAAAGCGTCGTT 122 consensus_5391#2 ------------------------------------------------------------ consensus_5391#0 GGCCTGGATCACATCGAACATTCCTAGGATCTTTCGCTTCTTTCTTTTCTCAAATTATTG 780 consensus_5391#1 GGCCTGGATCACATCGAACATTCCTAGGATCTTTCGCTTCTTTCTTTTCTCAAATTATTG 182 consensus_5391#2 --------------------------------------GAATTCGGCACGAGGTTCATTT 22 *** * * *** consensus_5391#0 TATGGACAGTGATATCATATTATTATTCATGGCATTGGTTAACCGGTATTATTCCTTTAT 840 consensus_5391#1 TATGGACAGTGATATCATATTATTATTCATGGCATTGGTTAACCGGTATTATTCCTTTAT 242 consensus_5391#2 TATTGATGTTTTGGCTATGC--TTATTTATGTTATGTGTTTA----TATTACTA--TCAT 74 *** ** * ** ***** *** ** *** * ***** * * ** consensus_5391#0 TAATCGGTGTACTTATTGAAGCATATATTGA-TCA-AATTNGATATTTAGTTATACCATT 898 consensus_5391#1 TAATCGGTGTACTTATTGAAGCATATATTGA-TCA-AATTGATAATTTAGTTATACCATT 300 consensus_5391#2 TTATCGTTGTTCTAATCATAACATTTACCGAATCATGAATAGTAATACAGTGAAACCAGA 134 * **** *** ** ** * *** ** ** *** * * ** *** * **** consensus_5391#0 AATT-TGTATGCTCATGTTT-ATAGTTTGTA-CAATGATACTCTTTTA-CTATGGGATG- 953 consensus_5391#1 AATT-GTTATGCTCATGTTTCATAGTTTGTAACAATGATACTCTTTTAACTATGGATTGT 359 consensus_5391#2 ATTTTGTGATAGTTCAATTGCATTAGCTG-ATGAACCAAGCTTATCCGATCAAAG--TGA 191 * ** ** * ** ** ** * ** * ** * * * ** consensus_5391#0 ATGTACTTGCT-AGATTCCTTATTTC-ACTACTTGGNGATGTTGTTATTTGCTGCTGGAC 1011 consensus_5391#1 ATGTACTTGCTTAGATTCCTTTATTT-TCTACTACATTTGGTGTATGTTTGTTTATTTGC 418 consensus_5391#2 ATATCATGAATTATGTAGCGAAAATGATTCATTAAAATAATCATACGACATGTGATTTA- 250 ** * * * * * * * * * * * consensus_5391#0 TATCATGAGTTGTTTACTA--TGTAGGCTATATGTCGCTATTGACATAATGTATGA---- 1065 consensus_5391#1 TTGCTTGTGTACATAATCAATTGATGTTTGTTTTTAACTATTGTTAAGGCCTAGTAATTG 478 consensus_5391#2 ------------------------------------------------------------ consensus_5391#0 ---------------------------------------- consensus_5391#1 TTCGCTTATTTTGAGCAATAAAATGTTAATGAACGAAGTC 518 consensus_5391#2 ---------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||