cluster # 5402

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Schistosoma mansoni
cluster # 5402 cluster # 5402 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5402#0 length = 609 sequences # 2

consensus_5402#1 length = 403 sequences # 1

consensusID : consensus_5402#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 609
fasta sequence

                              [CGGCACGAGGCGTAACAACTAAATACTTAAACGTCTTCTTTTTCTCGAAATTTTGACTGATATTTAAAACGTTTTAAGATGGATGAAAAAATTTTACTCGATCAATTTCGTCAAATGGATAAAGATGGAAATGGGACACTGTCAAGAAGAGAAATAAGACAATGTATGAAGTTAAGTGGATTTAATGAAAAATTTCTTACGGAATTTATCGAAACATTCGATNTAGATGGAGATGGTGAAATAACTTTAGAAG-ATATGAAAAAGTACTAAATATTGTTCCGAAAGAAGAAAAGGAGGCAGCTGCTTGGCGTAGTGTATTTAACTACATGGATAAAGATAATTCTGGGAAAATCTCTGTTTCTGAAGTTGTAAGTTTATTGGATGAAATGGGCTATGATATACAAACAACTGAACTCAATGAGTGGATGAATAGGAATAAAATTAACAAAGATGGTGGAATGGATTACCAACAGTTTTTAAATTTCATGCGTCGTAATTAAATTTCTTTGTTAAAAGTGTTTAGCAGAGTGGTGACTTATTATTTCACTCACTGTCATGATTTGAAGTCGCTGAATCACTCACAGTCAATCATTCTTAGTGAAAATCTAA]

[+] EMBL CD077506             [CGGCACGAGGCGTAACAACTAAATACTTAAACGTCTTCTTTTTCTCGAAATTTTGACTGATATTTAAAACGTTTTAAGATGGATGAAAAAATTTTACTCGATCAATTTCGTCAAATGGATAAAGATGGAAATGGGACACTGTCAAGAAGAGAAATAAGACAATGTATGAAGTTAAGTGGATTTAATGAAAAATTTCTTACGGAATTTATCGAAACATTCGATNTAGATGGAGATGGTGAAATAACTTTAGAAG ATATGAAA                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AI976961             [                                                                                                                                                               CAATGTATGAAGTTAAGTGGATTTAATGAAAAATTTCTTACGGAATTTATCGAAACATTCGATTTAGATGGAGATGGTGAAATAACTTTAGAAGAATATGAAAAAGTACTAAATATTGTTCCGAAAGAAGAAAAGGAGGCAGCTGCTTGGCGTAGTGTATTTAACTACATGGATAAAGATAATTCTGGGAAAATCTCTGTTTCTGAAGTTGTAAGTTTATTGGATGAAATGGGCTATGATATACAAACAACTGAACTCAATGAGTGGATGAATAGGAATAAAATTAACAAAGATGGTGGAATGGATTACCAACAGTTTTTAAATTTCATGCGTCGTAATTAAATTTCTTTGTTAAAAGTGTTTAGCAGAGTGGTGACTTATTATTTCACTCACTGTCATGATTTGAAGTCGCTGAATCACTCACAGTCAATCATTCTTAGTGAAAATCTAA]




>consensus_5402#0
CGGCACGAGGCGTAACAACTAAATACTTAAACGTCTTCTTTTTCTCGAAATTTTGACTGA
TATTTAAAACGTTTTAAGATGGATGAAAAAATTTTACTCGATCAATTTCGTCAAATGGAT
AAAGATGGAAATGGGACACTGTCAAGAAGAGAAATAAGACAATGTATGAAGTTAAGTGGA
TTTAATGAAAAATTTCTTACGGAATTTATCGAAACATTCGATNTAGATGGAGATGGTGAA
ATAACTTTAGAAGATATGAAAAAGTACTAAATATTGTTCCGAAAGAAGAAAAGGAGGCAG
CTGCTTGGCGTAGTGTATTTAACTACATGGATAAAGATAATTCTGGGAAAATCTCTGTTT
CTGAAGTTGTAAGTTTATTGGATGAAATGGGCTATGATATACAAACAACTGAACTCAATG
AGTGGATGAATAGGAATAAAATTAACAAAGATGGTGGAATGGATTACCAACAGTTTTTAA
ATTTCATGCGTCGTAATTAAATTTCTTTGTTAAAAGTGTTTAGCAGAGTGGTGACTTATT
ATTTCACTCACTGTCATGATTTGAAGTCGCTGAATCACTCACAGTCAATCATTCTTAGTG
AAAATCTAA

consensusID : consensus_5402#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 403
fasta sequence

                              [GGAAATGGGACACTGTCAGAAGAGAATAAGACAATGTATGAAGTTAGTGGATTTATGAAAAATTTCTTACGGAATTTATCGAAACATCGATTTAGATGGAGATGGTGAAATAACTTAGAAGAATATGAAAAAGTACTAAATATGTCCGAAGAGAAAGGAGGAGCTGCTGGGTGTGTATTACTACATGATAAGATATCTGGAAATCCTGTTCTGAGTGTAGTTATGGTGAATGGTATATTCAACACTGACTCATGATGNTGATGGATAAATACAAGTGGGATGATACACAGTTTAATTCAGCGCGNATAATTCTTGTAAAGNTTNNAGGGGGATATATTCANCACGCAGATGGNGCGTGATCACCACGCAACATCTAGGAATCTATANTTTTGTATGGGTACCN]

[+] EMBL SM7162               [GGAAATGGGACACTGTCAGAAGAGAATAAGACAATGTATGAAGTTAGTGGATTTATGAAAAATTTCTTACGGAATTTATCGAAACATCGATTTAGATGGAGATGGTGAAATAACTTAGAAGAATATGAAAAAGTACTAAATATGTCCGAAGAGAAAGGAGGAGCTGCTGGGTGTGTATTACTACATGATAAGATATCTGGAAATCCTGTTCTGAGTGTAGTTATGGTGAATGGTATATTCAACACTGACTCATGATGNTGATGGATAAATACAAGTGGGATGATACACAGTTTAATTCAGCGCGNATAATTCTTGTAAAGNTTNNAGGGGGATATATTCANCACGCAGATGGNGCGTGATCACCACGCAACATCTAGGAATCTATANTTTTGTATGGGTACCN]




>consensus_5402#1
GGAAATGGGACACTGTCAGAAGAGAATAAGACAATGTATGAAGTTAGTGGATTTATGAAA
AATTTCTTACGGAATTTATCGAAACATCGATTTAGATGGAGATGGTGAAATAACTTAGAA
GAATATGAAAAAGTACTAAATATGTCCGAAGAGAAAGGAGGAGCTGCTGGGTGTGTATTA
CTACATGATAAGATATCTGGAAATCCTGTTCTGAGTGTAGTTATGGTGAATGGTATATTC
AACACTGACTCATGATGNTGATGGATAAATACAAGTGGGATGATACACAGTTTAATTCAG
CGCGNATAATTCTTGTAAAGNTTNNAGGGGGATATATTCANCACGCAGATGGNGCGTGAT
CACCACGCAACATCTAGGAATCTATANTTTTGTATGGGTACCN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5402#0      CGGCACGAGGCGTAACAACTAAATACTTAAACGTCTTCTTTTTCTCGAAATTTTGACTGA 60
consensus_5402#1      ------------------------------------------------------------
                                                                                  

consensus_5402#0      TATTTAAAACGTTTTAAGATGGATGAAAAAATTTTACTCGATCAATTTCGTCAAATGGAT 120
consensus_5402#1      ------------------------------------------------------------
                                                                                  

consensus_5402#0      AAAGATGGAAATGGGACACTGTCAAGAAGAGAAATAAGACAATGTATGAAGTTAAGTGGA 180
consensus_5402#1      ------GGAAATGGGACACTGTCA-GAAGAGAA-TAAGACAATGTATGAAGTTA-GTGGA 51
                            ****************** ******** ******************** *****

consensus_5402#0      TTTAATGAAAAATTTCTTACGGAATTTATCGAAACATTCGATNTAGATGGAGATGGTGAA 240
consensus_5402#1      TTTA-TGAAAAATTTCTTACGGAATTTATCGAAACAT-CGATTTAGATGGAGATGGTGAA 109
                      **** ******************************** **** *****************

consensus_5402#0      ATAACTTTAGAAGATATGAAAAAGTACTAAATATTGTTCCGAAAGAAGAAAAGGAGGCAG 300
consensus_5402#1      ATAACTTAGAAGAATATGAAAAAGTACTAAATAT-GTCC-----GAAGAGAAAGGAGGAG 163
                      *******   *  ********************* ** *     ***** ** *  * **

consensus_5402#0      CTGCTTGGCGTAGTGTATTTAACTACATGGATAAAGATAATTCTGGGAAAATCTCTGTTT 360
consensus_5402#1      CTGCTGGGTG---TGTATT--ACTACATGA--TAAGATA--TCTGGAAA----TCCTGTT 210
                      ***** ** *   ******  ********    ******  ***** **    **   **

consensus_5402#0      CTGAAGTTGTAAGTTTATTGGATGAAATGGGCTATGATATACAAACAACTGAACTCAATG 420
consensus_5402#1      CTGAG--TGTAGTTATGGTGAATGGTAT--------ATTCAACACTGACTCATGATGNTG 260
                      ****   ****  * *  ** ***  **        **  *  *   *** *      **

consensus_5402#0      AGTGGATGAATAGGAATAAAATTAACAAAGATGGTGGAATGGATTACCAACAGTTTTTAA 480
consensus_5402#1      A-TGGATAAATACAAGTGGGATG---ATACACAGTTTAATTCAGCGCGNATAATTCTTG- 315
                      * ***** ****  * *   **    * * *  **  ***  *   *  * * ** **  

consensus_5402#0      ATTTCATGCGTCGTAATTAAATTTCTTTGTTAAAAGTGTTTAGCAGAGTGGTGACTTATT 540
consensus_5402#1      ----TAAAGNTTNNAGGGGGATATATTCANCACGCAGATGGNGCGTGATCACCACGCAAC 371
                           *    *   *     ** * **    *      *   **    *    **  *  

consensus_5402#0      ATTTCACTCACTGTCATGATTTGAAGTCGCTGAATCACTCACAGTCAATCATTCTTAGTG 600
consensus_5402#1      ATCTAGGAATCTATANTTTTGTATGGGTACCN---------------------------- 403
                      ** *      ** *  *  * *   *   *                              

consensus_5402#0      AAAATCTAA 609
consensus_5402#1      ---------