cluster # 5406

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Schistosoma mansoni
cluster # 5406 cluster # 5406 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5406#0 length = 814 sequences # 2

consensus_5406#1 length = 532 sequences # 1

consensusID : consensus_5406#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 814
fasta sequence

                              [CCTGAATACTCATCACTTTGGCCATCATCTGGAGGCTGTCTCGACCAGTTTTTATCCAGTTTATGCGATCTGGAAATGAGCAATTGTTTGTTGTCAAAGTGGACAGAAATTGCCGAGATTTGTATTCAAGTTCCGTGGTTAAAATCCTTGAATGTCAGTAACAACCGCATTCGTCTACCTGTTTCTCCAAAAGAAGTACATGATAAACAAAAAGAAAATGAATGTCTGGAATCTAAACTTTTATATGACATATACTCAGACCCTGTCTTGAGTGAACGGTTGTGTTCGAACGCTTTTCCCCAGTTGTCGCAGCTTACTTTAGTCAAATGCCCACTCCTAAATTGGAAAAGTATTAGGATAATATTATGTTGGATGCCATCTTTACAGTCGTTATCTCTGGCTTACAATAATTTGGGCAATCCTCCAATTGACTGGGAAAAAAATGCTATTGATGCTTTCCAAAAGTTGACTGACTTAGACTTAACTCACATAAATCTAACGGCCGCTCATCAGTTATTCGCTCTTATTGGAGCCTCCAAATATCTAAACAACCTACTATTAAATTATAACGAAATAGCGGACATTCCAAATCTAAATAATCATTTGTTTCGAAACCTCAACACTCTTGGGTTAAAGAACAACTTATTCACANATTGGGAATTCGTTAATCAGTTACTGAATTTATCCAAATTGGATCATGTAATGGTATCAGGATGCCCAGTTTTCGAGAACTCTGTCAATATAGAAACCGCTCGTCAGGAAGTCATTGCCCGTTTGCCAAATCTTAAAATGTTAGATCGTGTCGAGATCACTC]

[+] EMBL CD079465             [CCTGAATACTCATCACTTTGGCCATCATCTGGAGGCTGTCTCGACCAGTTTTTATCCAGTTTATGCGATCTGGAAATGAGCAATTGTTTGTTGTCAAAGTGGACAGAAATTGCCGAGATTTGTATTCAAGTTCCGTGGTTAAAATCCTTGAATGTCAGTAACAACCGCATTCGTCTACCTGTTTCTCCAAAAGAAGTACATGATAAACAAAAAGAAAATGAATGTCTGGAATCTAAACTTTTATATGACATATACTCAGACCCTGTCTTGAGTGAACGGTTGTGTTCGAACGCTTTTCCCCAGTTGTCGCAGCTTACTTTAGTCAAATGCCCACTCCTAAATTGGAAAAGTATTAGGATAATATTATGTTGGATGCCATCTTTACAGTCGTTATCTCTGGCTTACAATAATTTGGGCAATCCTCCAATTGACTGGGAAAAAAATGCTATTGATGCTTTCCAAAAGTTGACTGACTTAGACTTAACTCACATAAATCTAACGGCCGCTCATCAGTTATTCGCTCTTATTGGAGCCTCCAAATATCTAAACAACCTACTATTAAATTATAACGAAATAGCGGACATTCCAAATCTAAATAATCATTTGTTTCGAAACCTCAACACTCTTGGGTTAAAGAACAACTTATTCACANATTGGGAATTCGTTAATCAGTTACTGAA                                                                                                                                      ]
[+] EMBL CD078211             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               AGCGG  ATTCCAAATCTAAATAATCATTTGTTTCGAAACCTCAACACTCTTGGGTTAAAGAACAACTTATTCACAAATTGGGATTTCGTTAATCAGTTACTGAATTTATCCAAATTGGATCATGTAATGGTATCAGGATGCCCAGTTTTCGAGAACTCTGTCAATATAGAAACCGCTCGTCAGGAAGTCATTGCCCGTTTGCCAAATCTTAAAATGTTAGATCGTGTCGAGATCACTC]




>consensus_5406#0
CCTGAATACTCATCACTTTGGCCATCATCTGGAGGCTGTCTCGACCAGTTTTTATCCAGT
TTATGCGATCTGGAAATGAGCAATTGTTTGTTGTCAAAGTGGACAGAAATTGCCGAGATT
TGTATTCAAGTTCCGTGGTTAAAATCCTTGAATGTCAGTAACAACCGCATTCGTCTACCT
GTTTCTCCAAAAGAAGTACATGATAAACAAAAAGAAAATGAATGTCTGGAATCTAAACTT
TTATATGACATATACTCAGACCCTGTCTTGAGTGAACGGTTGTGTTCGAACGCTTTTCCC
CAGTTGTCGCAGCTTACTTTAGTCAAATGCCCACTCCTAAATTGGAAAAGTATTAGGATA
ATATTATGTTGGATGCCATCTTTACAGTCGTTATCTCTGGCTTACAATAATTTGGGCAAT
CCTCCAATTGACTGGGAAAAAAATGCTATTGATGCTTTCCAAAAGTTGACTGACTTAGAC
TTAACTCACATAAATCTAACGGCCGCTCATCAGTTATTCGCTCTTATTGGAGCCTCCAAA
TATCTAAACAACCTACTATTAAATTATAACGAAATAGCGGACATTCCAAATCTAAATAAT
CATTTGTTTCGAAACCTCAACACTCTTGGGTTAAAGAACAACTTATTCACANATTGGGAA
TTCGTTAATCAGTTACTGAATTTATCCAAATTGGATCATGTAATGGTATCAGGATGCCCA
GTTTTCGAGAACTCTGTCAATATAGAAACCGCTCGTCAGGAAGTCATTGCCCGTTTGCCA
AATCTTAAAATGTTAGATCGTGTCGAGATCACTC

consensusID : consensus_5406#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 532
fasta sequence

                              [TCGCTACTCGAGGTATATTATGGAATGACTTTCTTCGTTGCGAAATCTTATGTTGGCGGTCAGATCATTGGTTGAAATTACATAAGCAAGTGAACTTTTGAAACTACACTGATAAATAAGTTAATATGAAATTACAGGGTTTTGGGAACAATATAGAAATCAGAAGTGTGCGACCATACAAAAATGAAATATTGTGTGAAGGTGAATCTTAGGAATTCCTGAAAGTTGAATGATGATGGGCATAACAAAAAGTTATTAGAATTGAAATAATGTAGAAATTAAAACTCTTAAGTCATTCTAGAAGCTATCTTTAAAACAGACTAAAAAAAATCTTGCTAAGTTGAGTAATCTGTCTAAATACACATTAACACTATTGAAAGGATGTAATACTTAAGGTTAAGTGAACAATATATATTACAATTAATTACTTGAATAAGTAAAACACAAGGAAAACATTTACTCACATTATTGTAAGCCAGAGATAACGACTGTAAAGATGGCATCCAACATAATATTATCCTAATACTTTTCC]

[+] EMBL CD062241             [TCGCTACTCGAGGTATATTATGGAATGACTTTCTTCGTTGCGAAATCTTATGTTGGCGGTCAGATCATTGGTTGAAATTACATAAGCAAGTGAACTTTTGAAACTACACTGATAAATAAGTTAATATGAAATTACAGGGTTTTGGGAACAATATAGAAATCAGAAGTGTGCGACCATACAAAAATGAAATATTGTGTGAAGGTGAATCTTAGGAATTCCTGAAAGTTGAATGATGATGGGCATAACAAAAAGTTATTAGAATTGAAATAATGTAGAAATTAAAACTCTTAAGTCATTCTAGAAGCTATCTTTAAAACAGACTAAAAAAAATCTTGCTAAGTTGAGTAATCTGTCTAAATACACATTAACACTATTGAAAGGATGTAATACTTAAGGTTAAGTGAACAATATATATTACAATTAATTACTTGAATAAGTAAAACACAAGGAAAACATTTACTCACATTATTGTAAGCCAGAGATAACGACTGTAAAGATGGCATCCAACATAATATTATCCTAATACTTTTCC]




>consensus_5406#1
TCGCTACTCGAGGTATATTATGGAATGACTTTCTTCGTTGCGAAATCTTATGTTGGCGGT
CAGATCATTGGTTGAAATTACATAAGCAAGTGAACTTTTGAAACTACACTGATAAATAAG
TTAATATGAAATTACAGGGTTTTGGGAACAATATAGAAATCAGAAGTGTGCGACCATACA
AAAATGAAATATTGTGTGAAGGTGAATCTTAGGAATTCCTGAAAGTTGAATGATGATGGG
CATAACAAAAAGTTATTAGAATTGAAATAATGTAGAAATTAAAACTCTTAAGTCATTCTA
GAAGCTATCTTTAAAACAGACTAAAAAAAATCTTGCTAAGTTGAGTAATCTGTCTAAATA
CACATTAACACTATTGAAAGGATGTAATACTTAAGGTTAAGTGAACAATATATATTACAA
TTAATTACTTGAATAAGTAAAACACAAGGAAAACATTTACTCACATTATTGTAAGCCAGA
GATAACGACTGTAAAGATGGCATCCAACATAATATTATCCTAATACTTTTCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5406#0      CCTGAATACTCATCACTTTGGCCATCATCTGGAGGCTGTCTCGACCAGTTTTTATCCAGT 60
consensus_5406#1      ------------------------------------------------------------
                                                                                  

consensus_5406#0      TTATGCGATCTGGAAATGAGCAATTGTTTGTTGTCAAAGTGGACAGAAATTGCCGAGATT 120
consensus_5406#1      ------------------------------------------------------------
                                                                                  

consensus_5406#0      TGTATTCAAGTTCCGTGGTTAAAATCCTTGAATGTCAGTAACAACCGCATTCGTCTACCT 180
consensus_5406#1      ------------------------------------------------------------
                                                                                  

consensus_5406#0      GTTTCTCCAAAAGAAGTACATGATAAACAAAAAGAAAATGAATGTCTGGAATCTAAACTT 240
consensus_5406#1      ---------------------------------------------TCGCTACTCGAGGTA 15
                                                                     *  *    *  * 

consensus_5406#0      TTATATGACATATACTCAGACCCTGTCTTGAGTGAACGGTTGTGTTCGAACGCTTTTCCC 300
consensus_5406#1      TATTATGGAAT-------GACTTTCTTCGTTGCGAAATCTTATGTTGGCGGTCAGATCAT 68
                      *  ****  **       ***  * *     * ***   ** **** *    *   **  

consensus_5406#0      CAGTTGTCGCAGCTTACTTTAGTCAAATGCCCACTCCTAAATTGGAAAAGTATTAGGATA 360
consensus_5406#1      TGGTTGAAATTACATAAGCAAGTGAACTTTTGAAACTACACTGATAAATAAGTTAATATG 128
                        ****      * **    *** ** *    *  *   * *   ***    ***  ** 

consensus_5406#0      ATATTATGTTGGATGCCATCTTTACAGTCGTTATCTCTGGCTTACAATAATTTGGGCAAT 420
consensus_5406#1      AAATTACA--GGGTTTTGGGAACAATATAGAAATCAGAAGTGTGCGACCAT----ACAAA 182
                      * ****    ** *         *   * *  ***    *  * * *  **     *** 

consensus_5406#0      CCTCCAATTGACTGGGAAAAAAATGCTATTGATGCTTTCCAAAAGTTGACTGACTTAGAC 480
consensus_5406#1      AATGAAAT--ATTGTGTGAAGGTGAATCTTAGGAATTCCTGAAAGTTGAATGAT---GAT 237
                        *  ***  * ** *  **      * **     ** *  ******** ***    ** 

consensus_5406#0      TTAACTCACATAAATCTAACGGCCGCTCATCAGTTATTCGCTCTTATTGGAGCCTCCAAA 540
consensus_5406#1      GGGCATAACAAAAAGTTATTAGAATTGAAATAAT-----GTAGAAATTAAAACTCTTAAG 292
                           * *** ***  **   *      *  * *     *     ***  * *    ** 

consensus_5406#0      TATCTAAACAACCTACTATTAAATTATAACGAAATAGCGGACATTCCAAATCTAAATAAT 600
consensus_5406#1      TCATTCTAGAAGCTATCTTTAAAACAGACTAAAAAAA---ATCTTGCTAAGTTGAGTAAT 349
                      *   *  * ** ***   *****  * *   *** *    *  ** * **  * * ****

consensus_5406#0      CATTTGTTTCGAAACCTCAACACTCTTGGGTTAAAGAACAACTTATTCACANATTGGGAA 660
consensus_5406#1      C-TGTCTAAATACACATTAACACTATTG----AAAGGATGTAATACTTA-AGGTTAAGTG 403
                      * * * *    * ** * ****** ***    **** *     ** * * *  **  *  

consensus_5406#0      TTCGTTAATCAGTTACTGAATTTATCCAAATTGGATCATGTAATGGTATCAGGATGCCCA 720
consensus_5406#1      AACAATA-TATATTAC--AATTAATT---ACTTGAATAAGTAA-AACACAAGGAAAAC-A 455
                        *  ** *   ****  **** **    * * **  * ****    *  ****   * *

consensus_5406#0      GTTTTCGAGAACTCTGTCAAT-ATAGAAACCGCTCGTCAGGAAGTCATTGCCCGTTTGCC 779
consensus_5406#1      TTTACTCACATTATTGTAAGCCAGAGATAACGACTGTAAAGATGGCATCCAACATA-ATA 514
                       **    * *    *** *   * *** * **   ** * ** * ***    * *     

consensus_5406#0      AAATCTTAAAATGTTAGATCGTGTCGAGATCACTC 814
consensus_5406#1      TTATCCTAATACTTTTCC----------------- 532
                        *** *** *  **