These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5420#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 542 fasta sequence [GTACTTAACTGTAACGAAGAACGTTAAACTTAACTTTCTAATAGTTTTTGAGCACTGTGTGCTGATTTAAACTAAGTAAACGACCAAAGTGTTTAAAACTTAATTATTCATATCAAGGAGTTGGAGCAAATGATAATTAACTTGGGTTACTAACATTCACCATGAACTTTCCTCCAAAATGGTACAATCGCTTAAACTATTCTTAAGAAATATAGCCAATAAACTATTAGCGAATAAAAACAACTAATATTTGCATTAATCTAGATACCAAATGCTGAAAAATATCGTTAATCTTGGTTTTCACCTGTTCATATTTAAAGAAAACAATTTTAAATCTGCAGCCCTCAAAATGTTGAAATTAATGTTAAAAAGTTAAAAGCTGAAGGGTCCAGGTGGCTGGTCTAACAATATGTCAATCAAAAAAATTCACTGAACTTTACTTGCACACTGATCAAAACATCTTATCAATTCCAGAGGATAAACGACTTCGCAGCAAGAAGCACAAGCTNTATTTGTGTTCATCATGAATAAGGACACTGTCA] [+] EMBL CD194318 [GTACTTAACTGTAACGAAGAACGTTAAACTTAACTTTCTAATAGTTTTTGAGCACTGTGTGCTGATTTAAACTAAGTAAACGACCAAAGTGTTTAAAACTTAATTATTCATATCAAGGAGTTGGAGCAAATGATAATTAACTTGGGTTACTAACATTCACCATGAACTTTCCTCCAAAATGGTACAATCGCTTAAACTATTCTTAAGAAATATAGCCAATAAACTATTAGCGAATAAAAACAACTAATATTTGCATTAATCTAGATACCAAATGCTGAAAAATATCGTTAATCTTGGTTTTCACCTGTTCATATTTAAAGAAAACAATTTTAAATCTGCAGCCCTCAAAATGTTGAAATTAATGTTAAAAAGTTAAAAGCTGAAGGGTCCAGGTGGCTGGTCTAACAATATGTCAATCAAAAAAATTCACTGAACTTTACTTGCACACTGATCAAAACATCTTATCAATTCCAGAGGATAAACGACTTCGCAGCAAGAAGCACAAGCTNTATTTGTGTTCATCATGAATAAGGACACTGTCA] consensusID : consensus_5420#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 461 fasta sequence [AATTGAGCACATAAAAACGCGCACTCGTAGTTTCGAAATACTGAAAATCACTATTTTCAATAAATAAAGTCTCGATTGAAACATATTTGACAGTGTCCTTATTCATGATGAACACAAATAAAGCTTGTGCTTCTTGCTGCGAAGTCGTTTATCCTCTGGAATTGATAAGATGTTTTGATCAGGTATGGCATAGAAGATGTTTCCGTTGTCAGCACTGTGGGATGGCCTTGAGCATATGTAACTACCATGGTGGGTATGATAAGAAGCCATATTGTGCAGCACACACTCCAAAGCCGACCTCATTTACATTCATTCCGGATACACCAGAACTGTTGAGAGTAGCTAATAATACAAGAATGTTTAGCAGTATAAGATACAGTGCAGATGCTCAACGTATTAGAAGCAAAATTACATCATTTCCAGATGACTTGTGGACTCAACATACACTGAGACTATCGAAA] [+] EMBL CD187421 [AATTGAGCACATAAAAACGCGCACTCGTAGTTTCGAAATACTGAAAATCACTATTTTCAATAAATAAAGTCTCGATTGAAACATATTTGACAGTGTCCTTATTCATGATGAACACAAATAAAGCTTGTGCTTCTTGCTGCGAAGTCGTTTATCCTCTGGAATTGATAAGATGTTTTGATCAGGTATGGCATAGAAGATGTTTCCGTTGTCAGCACTGTGGGATGGCCTTGAGCATATGTAACTACCATGGTGGGTATGATAAGAAGCCATATTGTGCAGCACACACTCCAAAGCCGACCTCATTTACATTCATTCCGGATACACCAGAACTGTTGAGAGTAGCTAATAATACAAGAATGTTTAGCAGTATAAGATACAGTGCAGATGCTCAACGTATTAGAAGCAAAATTACATCATTTCCAGATGACTTGTGGACTCAACATACACTGAGACTATCGAAA] consensusID : consensus_5420#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 340 fasta sequence [GGTGACATCCACCACTATTCGATAATGATCTAGAATTTATGCCTGACGAATTTGAAAAAGTATGCGGTGAAGTGCAGTGATTGCTTAATCCAAATCGAGTAGGTGGTGGTGTATAACTATTGTAGTATGAAGCACCACGTCTATATGATTGTGGTGAAGAGCGTTCATCAAATCCAGAGCTTCGTCCCGAACGAACACTGTTTGCACTGCTAAACATTCTTGTATTATTAGCTACTCTCAACAGTTCTGGTGTATCCGGAATGAATGTAAATGAGGTCGGCTTTGGAGTGTGTGCTGCACAATATGGCTTCTTACCATACCCACCATGGTAGTTACATAT] [+] EMBL CD182193 [GGTGACATCCACCACTATTCGATAATGATCTAGAATTTATGCCTGACGAATTTGAAAAAGTATGCGGTGAAGTGCAGTGATTGCTTAATCCAAATCGAGTAGGTGGTGGTGTATAACTATTGTAGTATGAAGCACCACGTCTATATGATTGTGGTGAAGAGCGTTCATCAAATCCAGAGCTTCGTCCCGAACGAACACTGTTTGCACTGCTAAACATTCTTGTATTATTAGCTACTCTCAACAGTTCTGGTGTATCCGGAATGAATGTAAATGAGGTCGGCTTTGGAGTGTGTGCTGCACAATATGGCTTCTTACCATACCCACCATGGTAGTTACATAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5420#0 GTACTTAACTGTAACGAAGAACGTTAAACTTAACTTTCTAATAGTTTTTGAGCACTGTGT 60 consensus_5420#1 ------------AATTGAGCACATAAAAAC--GCGCACTCGTAGTTTCGAAATACTGAAA 46 consensus_5420#2 ------------------------------------------------------------ consensus_5420#0 GCTG--ATTTAAACTAAGTAAACGACCAAAGTGTTTAAAACTTAATTATTCATATCAAGG 118 consensus_5420#1 ATCACTATTTTCAATAAATAAAGTCTCGA-----TTGAAACATATTTGACAGTGTCCTT- 100 consensus_5420#2 -----------------------------------------------GGTGACATCCACC 13 ** consensus_5420#0 AGTTGGAGCAAATGATAATTAA-CTTGGGTTACTAACATTCACCATGAACTTTCCTCCAA 177 consensus_5420#1 ATTCATGATGAACACAAATAAAGCTTGTGCTTCTTGC-TGCGAAGTCGTTTATCCTCTGG 159 consensus_5420#2 ACTATTCGATAATGATC-TAGAATTTATGCCTGACGAATTTGAAA--AAGTATGCGGTGA 70 * * ** * * ** * * * * * consensus_5420#0 AATGGTACAATCGCTTAAACTATTCTTAAGAAATA-TAGCCAATAAACTATTAGCGAATA 236 consensus_5420#1 AATTGA---------TAAGATGTTTTGATCAGGTA-TGGCATAGAAGATGTTTCCG--TT 207 consensus_5420#2 AGTGCAGTGATTGCTTAATCCAAATCGAGTAGGTGGTGGTGTATAA-CTATTGTAG--TA 127 * * *** * * * * * * ** * ** * * consensus_5420#0 AAAACAACTAATATTTGCATTAATCTAGATACCAAATGCTGAAAAATATCGTTAATCTTG 296 consensus_5420#1 GTCAGCACTG-----TGGGATGGCCTTGAG--CATATG-TAACTACCATGGTGGGTATGA 259 consensus_5420#2 TGAAGCACCA-----------CGTCTATAT----GATTGTGGTGAAGAGCGTTCATCAAA 172 * ** ** * ** * * * ** * consensus_5420#0 GTTTTCACCTGTTCATATT-TAAAGAAAACAATTTTAAATCTGCAGCCCTCAAAATGTTG 355 consensus_5420#1 -----TAAGAAGCCATATTGTGCAGCACACACTCCAAA----GCCGACCTCA-----TTT 305 consensus_5420#2 -----TCCAGAGCTTCGTC-CCGAACGAACACTGTT-----TGCACTGCTAAACATTCTT 221 * * *** * ** ** * * consensus_5420#0 AAATTAATGTTAAAAAGTTAAAAGCTGAAGGGTCCAGGTGGCTGGTCTAACAATATGTCA 415 consensus_5420#1 ACATTCATTCCGGATACACCAGAACTGTTGAGAGTAGCTAA-TAATACAAGAATGTTTAG 364 consensus_5420#2 GTATT-ATTAGCTACTCTCAACAGTTCTGGTGTATCCGGAATGAATGTAAATGAGGTCGG 280 *** ** * * * * * * * ** consensus_5420#0 ATCAAAAAAATTCACTGAACTTTACTTGCACACTGATCAAAACATCTTATCAATTCCAGA 475 consensus_5420#1 CAGTATAAGATACAGTGCAGATGCTCAACGTATTAGAAGCAAAATTACATCATTTCCAGA 424 consensus_5420#2 CTTTGGAGTGTGTGCTGCACAATAT-GGCTTCTTACCATACCCACCATGGTAGTTACATA 339 * * ** * * * * * ** ** * consensus_5420#0 GGATAAACGACTTCGCAGCAAGAAGCACAAGCTNTATTTGTGTTCATCATGAATAAGGAC 535 consensus_5420#1 TGACTTGTGGACTC-----AACATACACTGAGACTATCGAAA------------------ 461 consensus_5420#2 T----------------------------------------------------------- 340 consensus_5420#0 ACTGTCA 542 consensus_5420#1 ------- consensus_5420#2 ------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||