cluster # 5430

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Schistosoma mansoni
cluster # 5430 cluster # 5430 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5430#0 length = 430 sequences # 1

consensus_5430#1 length = 348 sequences # 2

consensusID : consensus_5430#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 430
fasta sequence

                              [TTGGCCCTCAGGCAGATCGGCACGAGGGAAATCAGAGAATAGTTTATTAGCTTTGGAACCATTACAGCTCAATTCAAATAATCAACGTCCACGTAATAATAATAATAATAATCGTGAATCATCAAAACCAGTCCATAATTTTTCATGGTCAAGTTTGGATGACCGAGAAATAAATTTATCTGACACTACTGCTCATTCAACTACAGAATTAATTCATTCTTCAAATGAACAGAAATTAGCCTGCTTCAATTTGTCATCACCAACAACAACTGACGAGAATCAACAACCAGAAAGAGTGAATCATACTTTTAACGAGTCGACAAATCGTTCTAATCCTGTAGATTCAGCTACTCCAAGTAGTCCGCACACTCGAAACAGTGATNAACAGTTTACTTCATCATCAGCTGAACCATGTCAAGAAAGGACTATT]

[+] EMBL CD084021             [TTGGCCCTCAGGCAGATCGGCACGAGGGAAATCAGAGAATAGTTTATTAGCTTTGGAACCATTACAGCTCAATTCAAATAATCAACGTCCACGTAATAATAATAATAATAATCGTGAATCATCAAAACCAGTCCATAATTTTTCATGGTCAAGTTTGGATGACCGAGAAATAAATTTATCTGACACTACTGCTCATTCAACTACAGAATTAATTCATTCTTCAAATGAACAGAAATTAGCCTGCTTCAATTTGTCATCACCAACAACAACTGACGAGAATCAACAACCAGAAAGAGTGAATCATACTTTTAACGAGTCGACAAATCGTTCTAATCCTGTAGATTCAGCTACTCCAAGTAGTCCGCACACTCGAAACAGTGATNAACAGTTTACTTCATCATCAGCTGAACCATGTCAAGAAAGGACTATT]




>consensus_5430#0
TTGGCCCTCAGGCAGATCGGCACGAGGGAAATCAGAGAATAGTTTATTAGCTTTGGAACC
ATTACAGCTCAATTCAAATAATCAACGTCCACGTAATAATAATAATAATAATCGTGAATC
ATCAAAACCAGTCCATAATTTTTCATGGTCAAGTTTGGATGACCGAGAAATAAATTTATC
TGACACTACTGCTCATTCAACTACAGAATTAATTCATTCTTCAAATGAACAGAAATTAGC
CTGCTTCAATTTGTCATCACCAACAACAACTGACGAGAATCAACAACCAGAAAGAGTGAA
TCATACTTTTAACGAGTCGACAAATCGTTCTAATCCTGTAGATTCAGCTACTCCAAGTAG
TCCGCACACTCGAAACAGTGATNAACAGTTTACTTCATCATCAGCTGAACCATGTCAAGA
AAGGACTATT

consensusID : consensus_5430#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 348
fasta sequence

                              [GAAGAATAAAAAAAGATGACCGTATATTAGAAATTAACGGAATTGATTTAGAAAATGGGACACAAGAACAAGCAGCTCAAATAATTAATTCTGTTTCGGATTATGTTATTTTTAAAATAAGCCGTCGAAATCGATCTGATACACCTGATATTTTAAGAACTACAACAGATTCAGAAGAGAAATCAGAGAATAGTTTATTAGCTTTGGAACCATTACAGCTCAATTCAAATAATCAACGTCCACGTAATAATAATAATAATAATCGTGAATCATCANAACCAGTCCATAATTTTTCATGGTCAAGTTTGGATGACCGAGAAATAAATTTATCTGACACTACTGCTCATT]

[+] EMBL CD194641             [GAAGAATAAAAAAAGATGACCGTATATTAGAAATTAACGGAATTGATTTAGAAAATGGGACACAAGAACAAGCAGCTCAAATAATTAATTCTGTTTCGGATTATGTTATTTTTAAAATAAGCCGTCGAAATCGATCTGATACACCTGATATTTTAAGAACTACAACAGATTCAGAAGAGAAATCAGAGAATAGTTTATTAGCTTT                                                                                                                                               ]
[+] EMBL CD181410             [ AAGAATAAAAAAAGATGACCGTATATTAGAAATTAACGGAATTGATTTAGAAAATGGGACACAAGAACAAGCAGCTCAAATAATTAATTCTGTTTCGGATTATGTTATTTTTAAAATAAGCCGTCGAAATCGATCTGATACACCTGATATTTTAAGAACTACAACAGATTCAGAAGAGAAATCAGAGAATAGTTTATTAGCTTTGGAACCATTACAGCTCAATTCAAATAATCAACGTCCACGTAATAATAATAATAATAATCGTGAATCATCANAACCAGTCCATAATTTTTCATGGTCAAGTTTGGATGACCGAGAAATAAATTTATCTGACACTACTGCTCATT]




>consensus_5430#1
GAAGAATAAAAAAAGATGACCGTATATTAGAAATTAACGGAATTGATTTAGAAAATGGGA
CACAAGAACAAGCAGCTCAAATAATTAATTCTGTTTCGGATTATGTTATTTTTAAAATAA
GCCGTCGAAATCGATCTGATACACCTGATATTTTAAGAACTACAACAGATTCAGAAGAGA
AATCAGAGAATAGTTTATTAGCTTTGGAACCATTACAGCTCAATTCAAATAATCAACGTC
CACGTAATAATAATAATAATAATCGTGAATCATCANAACCAGTCCATAATTTTTCATGGT
CAAGTTTGGATGACCGAGAAATAAATTTATCTGACACTACTGCTCATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5430#0      TTGGCCCTCAGGCAGATCGGCACGAGGGAAATCAGAGAATAGTTTATTAGCTTTGGAACC 60
consensus_5430#1      -------------------------GAAGAATAAAAAAAGATGACCGTATATTAGAAATT 35
                                               *   *** * * ** *      **  ** * **  

consensus_5430#0      ATTACAGCTCAATTCAAATAATCAACGTCCACGTAATAATAATAATAATAATCGTGAATC 120
consensus_5430#1      AACGGAATT-GATTTAGAAAAT----------GGGACA-CAAGAACAAGCAGCTCAAATA 83
                      *    *  *  *** * * ***          *  * *  ** ** **  * *   *** 

consensus_5430#0      ATCAAAACCAGTCCATAATTTTTCATGGTCAAGTTTGGATGACCGAGAAATAAATTTATC 180
consensus_5430#1      ATTAATTCTGTTTCGGATTATGTTATTTTTAAAATAAGCCGTCG-------AAATCGATC 136
                      ** **  *   * *  * * * * **  * **  *  *  * *        ****  ***

consensus_5430#0      TGACACTACTGCTCATTCAACTAC-AGAATTAATTCATTCTTCAAATGAACAGAAATTAG 239
consensus_5430#1      TGATACACCTGATATTTTAAGAACTACAACAGATTCAGAAGAGAAAT---CAGAGAATAG 193
                      *** **  *** *  ** **  ** * **   *****      ****   **** * ***

consensus_5430#0      CCTGCTTCAATTTGTCATCACCAACAACAACTGACGAGAATCAACAACCAGAAAGAGTGA 299
consensus_5430#1      TTTA-TTAGCTTTGGAACCATTACAGCTCAATTCAAATAATCAACGTCCACGTAATAATA 252
                        *  **   ****  * **  *      * *    * *******  ***   *     *

consensus_5430#0      ATCATACTTTTAACGAGTCGACAAATCGTTCTAATCCTGTAGATTCAGCTACTCCAAGTA 359
consensus_5430#1      ATAATAATAATCGTGAATCATCANA----ACCAGTCC-ATAATTTTTCATGGTCAA---- 303
                      ** *** *  *   ** **  ** *     * * ***  **  **    *  ** *    

consensus_5430#0      GTCCGCACACTCGAAACAGTGATNAACAGTTTACTTCATCATCAGCTGAACCATGTCAAG 419
consensus_5430#1      GTTTGGATGACCGAGAAATAAATT--TATCTGACACTACTGCTCATT------------- 348
                      **  * *    *** * *   **    *  * **   *        *             

consensus_5430#0      AAAGGACTATT 430
consensus_5430#1      -----------