These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5431#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 803 fasta sequence [GCCATATTCGGCCGAGCGAAAGTTCAGATTCGTCTGTTCAATCAGTAGGACCAGTCATAATCGACAAAGAAAAAAATTTCAAATGTTCCCGGGACCAGTATATTAAACAACACAATAATTATAATAAAAATCTACCTTCAAAGCTAGATGAATTGGAAAGCAAGTTATTGAAGCATCCTTTATTATTATTTCCCTACTTACTTCAGTATTTACCTCTTTCCGTTTCGAAGACAGTAATTGATTTGTTAGATCGGCCACATAAAGAAAGACTGATAGATTTGATTAAAATAGCAAAACATCAGAATATTCATGAAAATGTTCAAAATAAAACAGGGATGAAGTTATCTAATCCATCAAATGGTGGTTTAATAAGTGATAGTAAGTTAAACTCTTCAGTTATCTCAATCAAATCAAAAGTTGAAGATGAAGATTTCATTGAACCAGAAATGTTCATAGAATACCCATCAGTCAAGGAAGAAGCATTAGCATTTTGTGAATTTATTAAGAATTTGGATGGTTCATCAATTGACAATCCGGAACCAACAACACTAGCAAGTTTATTTGCTGGAACACATGAAGCTCAACCCCCAGTATCAACACCAATTAATGTTGTTGAATTAATTAATTTACCATATGAATTAAGACATTCTGTTAAAGAACCACCCAAATTACTCTGTGATAAACATTCTTTGACTGATTCAGAGAGTTTACCACGTATAACTAAGTCAAATGCAGCTAAAAAGCAAGAAAAGGTAACTATCTATGGTCTTTCCATAAAATAACTATCTTAAGAT-AAAATATTT] [+] EMBL CD081582 [GCCATATTCGGCCGAGCGAAAGTTCAGATTCGTCTGTTCAATCAGTAGGACCAGTCATAATCGACAAAGAAAAAAATTTCAAATGTTCCCGGGACCAGTATATTAAACAACACAATAATTATAATAAAAATCTACCTTCAAAGCTAGATGAATTGGAAAGCAAGTTATTGAAGCATCCTTTATTATTATTTCCCTACTTACTTCAGTATTTACCTCTTTCCGTTTCGAAGACAGTAATTGATTTGTTAGATCGGCCACATAAAGAAAGACTGATAGATTTGATTAAAATAGCAAAACATCAGAATATTCATGAAAATGTTCAAAATAAAACAGGGATGAAGTTATCTAATCCATCAAATGGTGGTTTAATAAGTGATAGTAAGTTAAACTCTTCAGTTATCTCAATCAAATCAAAAGTTGAAGATGAAGATTTCATTGAACCAGAAATGTTCATAGAATACCCATCAGTCAAGGAAGAAGCATTAGCATTTTGTGAATTTATTAAGAATTTGGATGGTTCATCAATTGACAATCCGGAACCAACAACACTAGCAAGTTTATTTGCTGGAACACATGAAGCTCAACCCCCAGTATCAACACCAATTAATGTTGTTGAATTAATTAATTTACCATATGAATTAAGACATTCTGTTAAAGAACCACCCAAATTACTCTGTGATAAACATTCTTTGACTGATTCAGAGAGTTTACCACGTATAACTAAGTCAAATGCAGCTAAAAAGCAAGAAAAGGTAACTATCTATGGTCTTTCCATAAAATAACTATCTTAAGAT AAAATATT ] [-] EMBL CD075406 [ aCTACT TTCAGTATTTACCTCTTTCCGTTTCGAAGACAGTAATTGATTTGTTAGATCGGCCACATAAAGAAAGACTGATAGATTTGATTAAAATAGCAAAACATCAGAATATTCATGAAAATGTTCAAAATAAAACAGGGATGAAGTTATCTAATCCATCAAATGGTGGTTTAATAAGTGATAGTAAGTTAAACTCTTCAGTTATCTCAATCAAATCAAAAGTTGAAGATGAAGATTTCATTGAACCAGAAATGTTCATAGAATACCCATCAGTCAAGGAAGAAGCATTAGCATTTTGTGAATTTATTAAGAATTTGGATGGTTCATCAATTGACAATCCGGAACCAACAACACTAGCAAGTTTATTTGCTGGAACACATGAAGCTCAACCCCCAGTATCAACACCAATTAATGTTGTTGAATTAATTAATTTACCATATGAATTAAGACATTCTGTTAAAGAACCACCCAAATTACTCTGTGATAAACATTCTTTGACTGATTCAGAGAGTTTACCACGTATAACTAAGTCAAATGCAGCTAAAAAGCAAGAAAAGGTAACTATCTATGGTCTTTCCATAAAATAACTATCTTAAGATAAAAATATTT] consensusID : consensus_5431#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 427 fasta sequence [TAGCAAGTTTATTTGCTGGAACACATGAAGCTCAACCCCCAGTATCAACACCAATTAATGTTGTTGAATTAATTAATTTACCATATGAATTAAGACATTCTGTTAAAGAACCACCCAAATTACTCTGTGATAAACATTCTTTGACTGATTCAGAGAGTTTACCACGTATAACTAAGTCAAATGCAGCTAAAAAGCAAGAAAAGAATTTTGAAAGATTACATTATGGTGCATGGTTTATCCCACCCAAACAATGGAAAGTTGTCAAAGATAATGGTGCGAATACGATACACAATAAAAGTGAATTTGACAGTGTTAAAACTAAATCATATAAGGAACTAATAGAAAGCTTAAATGGGAAAATGAAAGAGACACATGGATACGATGCCTTTATGGAATTTATGCAGAATAAAAATAAACGTATACCGAA] [+] EMBL CD152387 [TAGCAAGTTTATTTGCTGGAACACATGAAGCTCAACCCCCAGTATCAACACCAATTAATGTTGTTGAATTAATTAATTTACCATATGAATTAAGACATTCTGTTAAAGAACCACCCAAATTACTCTGTGATAAACATTCTTTGACTGATTCAGAGAGTTTACCACGTATAACTAAGTCAAATGCAGCTAAAAAGCAAGAAAAGAATTTTGAAAGATTACATTATGGTGCATGGTTTATCCCACCCAAACAATGGAAAGTTGTCAAAGATAATGGTGCGAATACGATACACAATAAAAGTGAATTTGACAGTGTTAAAACTAAATCATATAAGGAACTAATAGAAAGCTTAAATGGGAAAATGAAAGAGACACATGGATACGATGCCTTTATGGAATTTATGCAGAATAAAAATAAACGTATACCGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5431#0 GCCATATTCGGCCGAGCGAAAGTTCAGATTCGTCTGTTCAATCAGTAGGACCAGTCATAA 60 consensus_5431#1 ------------------------------------------------------------ consensus_5431#0 TCGACAAAGAAAAAAATTTCAAATGTTCCCGGGACCAGTATATTAAACAACACAATAATT 120 consensus_5431#1 ------------------------------------------------------------ consensus_5431#0 ATAATAAAAATCTACCTTCAAAGCTAGATGAATTGGAAAGCAAGTTATTGAAGCATCCTT 180 consensus_5431#1 ------------------------------------------------------------ consensus_5431#0 TATTATTATTTCCCTACTTACTTCAGTATTTACCTCTTTCCGTTTCGAAGACAGTAATTG 240 consensus_5431#1 ------------------------------------------------------------ consensus_5431#0 ATTTGTTAGATCGGCCACATAAAGAAAGACTGATAGATTTGATTAAAATAGCAAAACATC 300 consensus_5431#1 ------------------------------------------------------------ consensus_5431#0 AGAATATTCATGAAAATGTTCAAAATAAAACAGGGATGAAGTTATCTAATCCATCAAATG 360 consensus_5431#1 ------------------------------------------------------------ consensus_5431#0 GTGGTTTAATAAGTGATAGTAAGTTAAACTCTTCAGTTATCTCAATCAAATCAAAAGTTG 420 consensus_5431#1 ------------------------------------------------------------ consensus_5431#0 AAGATGAAGATTTCATTGAACCAGAAATGTTCATAGAATACCCATCAGTCAAGGAAGAAG 480 consensus_5431#1 ------------------------------------------------------------ consensus_5431#0 CATTAGCATTTTGTGAATTTATTAAGAATTTGGATGGTTCATCAATTGACAATCCGGAAC 540 consensus_5431#1 ------------------------------------------------------------ consensus_5431#0 CAACAACACTAGCAAGTTTATTTGCTGGAACACATGAAGCTCAACCCCCAGTATCAACAC 600 consensus_5431#1 ---------TAGCAAGTTTATTTGCTGGAACACATGAAGCTCAACCCCCAGTATCAACAC 51 *************************************************** consensus_5431#0 CAATTAATGTTGTTGAATTAATTAATTTACCATATGAATTAAGACATTCTGTTAAAGAAC 660 consensus_5431#1 CAATTAATGTTGTTGAATTAATTAATTTACCATATGAATTAAGACATTCTGTTAAAGAAC 111 ************************************************************ consensus_5431#0 CACCCAAATTACTCTGTGATAAACATTCTTTGACTGATTCAGAGAGTTTACCACGTATAA 720 consensus_5431#1 CACCCAAATTACTCTGTGATAAACATTCTTTGACTGATTCAGAGAGTTTACCACGTATAA 171 ************************************************************ consensus_5431#0 CTAAGTCAAATGCAGCTAAAAAGCAAGAAAAGG----TAACTATCTATGGTCTT-TCCAT 775 consensus_5431#1 CTAAGTCAAATGCAGCTAAAAAGCAAGAAAAGAATTTTGAAAGATTACATTATGGTGCAT 231 ******************************** * * ** * * * *** consensus_5431#0 AAAATAACTATCTTAAG--ATAAAATATTT------------------------------ 803 consensus_5431#1 GGTTTATCCCACCCAAACAATGGAAAGTTGTCAAAGATAATGGTGCGAATACGATACACA 291 ** * * ** ** ** ** consensus_5431#0 ------------------------------------------------------------ consensus_5431#1 ATAAAAGTGAATTTGACAGTGTTAAAACTAAATCATATAAGGAACTAATAGAAAGCTTAA 351 consensus_5431#0 ------------------------------------------------------------ consensus_5431#1 ATGGGAAAATGAAAGAGACACATGGATACGATGCCTTTATGGAATTTATGCAGAATAAAA 411 consensus_5431#0 ---------------- consensus_5431#1 ATAAACGTATACCGAA 427 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||