cluster # 5435

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Schistosoma mansoni
cluster # 5435 cluster # 5435 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5435#0 length = 608 sequences # 1

consensus_5435#1 length = 482 sequences # 2

consensusID : consensus_5435#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 608
fasta sequence

                              [ACTTCACTCAAGAAAATGAGATATACACTGCTGCCTAGTCTATCGATATCATTTTGCCTGATCGTCATTTGGCCGAATAAATTTTTCAATTGTGAAGACAGTTGTCAAAAATTGCAGGAGTATGACAAAGTAATTTTTGAAAATGTTTCGTATCGATATTCTATTCATAACAAATATTCAATGCGAATTAGGCGTCATCAATTACATCCAGTTGTGAAGGGTGATTTTGAAGAAGTCACTAGTGAACAAACTGTTATCCCAAAATTTTCGTTTGAATATTACAATAATCATGTCGATCATTTTAATATTTCGCCTACTGGTGTAATAAACTTTCCCGTAGGATTAGTTACCTTTACTATGCCAGAAATTCAATCTTCTCAGTTACAGATCTTGAATGAAGAGGAATTAATCGCTCTCAGATGGTCATTTCAACCAAAAGACTATAGTACAGAGGATACAATCAATATAGCTTCTTTGATATATCCAAATGGAAAGATATCATTGTATTATGAGAAGATTCCCACGGAAATTCAGGAGGAAGAGCTGGATACATTAATCACAGGCGAAGTCATGTGTAATTCAGAACCCATANATCCTGNAATAACCGT]

[+] EMBL CD153265             [ACTTCACTCAAGAAAATGAGATATACACTGCTGCCTAGTCTATCGATATCATTTTGCCTGATCGTCATTTGGCCGAATAAATTTTTCAATTGTGAAGACAGTTGTCAAAAATTGCAGGAGTATGACAAAGTAATTTTTGAAAATGTTTCGTATCGATATTCTATTCATAACAAATATTCAATGCGAATTAGGCGTCATCAATTACATCCAGTTGTGAAGGGTGATTTTGAAGAAGTCACTAGTGAACAAACTGTTATCCCAAAATTTTCGTTTGAATATTACAATAATCATGTCGATCATTTTAATATTTCGCCTACTGGTGTAATAAACTTTCCCGTAGGATTAGTTACCTTTACTATGCCAGAAATTCAATCTTCTCAGTTACAGATCTTGAATGAAGAGGAATTAATCGCTCTCAGATGGTCATTTCAACCAAAAGACTATAGTACAGAGGATACAATCAATATAGCTTCTTTGATATATCCAAATGGAAAGATATCATTGTATTATGAGAAGATTCCCACGGAAATTCAGGAGGAAGAGCTGGATACATTAATCACAGGCGAAGTCATGTGTAATTCAGAACCCATANATCCTGNAATAACCGT]




>consensus_5435#0
ACTTCACTCAAGAAAATGAGATATACACTGCTGCCTAGTCTATCGATATCATTTTGCCTG
ATCGTCATTTGGCCGAATAAATTTTTCAATTGTGAAGACAGTTGTCAAAAATTGCAGGAG
TATGACAAAGTAATTTTTGAAAATGTTTCGTATCGATATTCTATTCATAACAAATATTCA
ATGCGAATTAGGCGTCATCAATTACATCCAGTTGTGAAGGGTGATTTTGAAGAAGTCACT
AGTGAACAAACTGTTATCCCAAAATTTTCGTTTGAATATTACAATAATCATGTCGATCAT
TTTAATATTTCGCCTACTGGTGTAATAAACTTTCCCGTAGGATTAGTTACCTTTACTATG
CCAGAAATTCAATCTTCTCAGTTACAGATCTTGAATGAAGAGGAATTAATCGCTCTCAGA
TGGTCATTTCAACCAAAAGACTATAGTACAGAGGATACAATCAATATAGCTTCTTTGATA
TATCCAAATGGAAAGATATCATTGTATTATGAGAAGATTCCCACGGAAATTCAGGAGGAA
GAGCTGGATACATTAATCACAGGCGAAGTCATGTGTAATTCAGAACCCATANATCCTGNA
ATAACCGT

consensusID : consensus_5435#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 482
fasta sequence

                              [ACTTCACTCAAGAAAATGAGATATACACTGCTGCCTAGTCTATCGATATCATTTTGCCTGATCGTCATTTGGCCGAATAAATTTTTCAATTGT-GAAAACAGTAGTCCCCAATTGCAGGAGTATGACAAAGTAATTTTTGAAAATGTTTCGTATCGATATTCTATTCATAACAAATATTCAATGCGAATTAGGCGTCATCAATTACATCCAGTTGTGAAGGGTGATTTTGAAGAAGTCACTAGTGAACAAACTGTTATCCCAAAATTTTCGTTTGAATATTACAATAATCATGTCGATCATTTTAATATTTCGCCTACTGGTGTAATAAACTTTCCCGTAGGATTAGTTACCTTTACTATGCCAGAAATTCAATCTTCTCAGTTACAGATCTTGAATGAAGAGGAATTAATCGCTCTCAGATGGTCATTTCAACCAAAAGACTATAGTACAGATTCCCACGGAAATTCAGGAGGAAGAGCTGG]

[+] EMBL CD112237             [ACTTCACTCAAGAAAATGAGATATACACTGCTGCCTAGTCTATCGATATCATTTTGCCTGATCGTCATTTGGCCGAATAAATTTTTCAATTGT GAAAACAGTAGTCCCCAATTGCAGGAGTATGACAAAGTAATTTTTGAAAATGTTTCGTATCGATATTCTATTCATAACAAATATTCAATGCGAATTAGGCGTCATCAATTACATCCAGTTGTGAAGGGTGATTTTGAAGAAGTCACTAGTGAACAAACTGTTATCCCAAAATTTTCGTTTGAATATTACAATAATCATGTCGATCATTTTAATATTTCGCCTACTGGTGTAATAAACTTTCCCGTAGGATTAGTTACCTTTACTATGCCAGAAATTCAATCTTCTCAGTTACAGATCTTGAATGAAGAGGAATTAATCGCTCTCAGATGGTCATTTCAACCAAAAGACTATAGTACAGATTCCCACGGAAATTC               ]
[+] EMBL CD112074             [ CTTCACTCAAGAAAATGAGATATACACTGCTGCCTAGTCTATCGATATCATTTTGCCTGATCGTCATTTGGCCGAATAAATTTTTCAATTGTAGAAGACAGTTGTCAAAAATTGCAGGAGTATGACAAAGTAATTTTTGAAAATGTTTCGTATCGATATTCTATTCATAACAAATATTCAATGCGAATTAGGCGTCATCAATTACATCCAGTTGTGAAGGGTGATTTTGAAGAAGTCACTAGTGAACAAACTGTTATCCCAAAATTTTCGTTTGAATATTACAATAATCATGTCGATCATTTTAATATTTCGCCTACTGGTGTAATAAACTTTCCCGTAGGATTAGTTACCTTTACTATGCCAGAAATTCAATCTTCTCAGTTACAGATCTTGAATGAAGAGGAATTAATCGCTCTCAGATGGTCATTTCAACCAAAAGACTATAGTACAGATTCCCACGGAAATTCAGGAGGAAGAGCTGG]




>consensus_5435#1
ACTTCACTCAAGAAAATGAGATATACACTGCTGCCTAGTCTATCGATATCATTTTGCCTG
ATCGTCATTTGGCCGAATAAATTTTTCAATTGTGAAAACAGTAGTCCCCAATTGCAGGAG
TATGACAAAGTAATTTTTGAAAATGTTTCGTATCGATATTCTATTCATAACAAATATTCA
ATGCGAATTAGGCGTCATCAATTACATCCAGTTGTGAAGGGTGATTTTGAAGAAGTCACT
AGTGAACAAACTGTTATCCCAAAATTTTCGTTTGAATATTACAATAATCATGTCGATCAT
TTTAATATTTCGCCTACTGGTGTAATAAACTTTCCCGTAGGATTAGTTACCTTTACTATG
CCAGAAATTCAATCTTCTCAGTTACAGATCTTGAATGAAGAGGAATTAATCGCTCTCAGA
TGGTCATTTCAACCAAAAGACTATAGTACAGATTCCCACGGAAATTCAGGAGGAAGAGCT
GG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5435#0      ACTTCACTCAAGAAAATGAGATATACACTGCTGCCTAGTCTATCGATATCATTTTGCCTG 60
consensus_5435#1      ACTTCACTCAAGAAAATGAGATATACACTGCTGCCTAGTCTATCGATATCATTTTGCCTG 60
                      ************************************************************

consensus_5435#0      ATCGTCATTTGGCCGAATAAATTTTTCAATTGTGAAGACAGTTGTCAAAAATTGCAGGAG 120
consensus_5435#1      ATCGTCATTTGGCCGAATAAATTTTTCAATTGTGAAAACAGTAGTCCCCAATTGCAGGAG 120
                      ************************************ ***** ***   ***********

consensus_5435#0      TATGACAAAGTAATTTTTGAAAATGTTTCGTATCGATATTCTATTCATAACAAATATTCA 180
consensus_5435#1      TATGACAAAGTAATTTTTGAAAATGTTTCGTATCGATATTCTATTCATAACAAATATTCA 180
                      ************************************************************

consensus_5435#0      ATGCGAATTAGGCGTCATCAATTACATCCAGTTGTGAAGGGTGATTTTGAAGAAGTCACT 240
consensus_5435#1      ATGCGAATTAGGCGTCATCAATTACATCCAGTTGTGAAGGGTGATTTTGAAGAAGTCACT 240
                      ************************************************************

consensus_5435#0      AGTGAACAAACTGTTATCCCAAAATTTTCGTTTGAATATTACAATAATCATGTCGATCAT 300
consensus_5435#1      AGTGAACAAACTGTTATCCCAAAATTTTCGTTTGAATATTACAATAATCATGTCGATCAT 300
                      ************************************************************

consensus_5435#0      TTTAATATTTCGCCTACTGGTGTAATAAACTTTCCCGTAGGATTAGTTACCTTTACTATG 360
consensus_5435#1      TTTAATATTTCGCCTACTGGTGTAATAAACTTTCCCGTAGGATTAGTTACCTTTACTATG 360
                      ************************************************************

consensus_5435#0      CCAGAAATTCAATCTTCTCAGTTACAGATCTTGAATGAAGAGGAATTAATCGCTCTCAGA 420
consensus_5435#1      CCAGAAATTCAATCTTCTCAGTTACAGATCTTGAATGAAGAGGAATTAATCGCTCTCAGA 420
                      ************************************************************

consensus_5435#0      TGGTCATTTCAACCAAAAGACTATAGTACAGAGGATACAATCAATATAGCTTCTTTGATA 480
consensus_5435#1      TGGTCATTTCAACCAAAAGACTATAGTACAG-----ATTCCCACGGAAATTCAGGAGGAA 475
                      *******************************     *    **    *  *     *  *

consensus_5435#0      TATCCAAATGGAAAGATATCATTGTATTATGAGAAGATTCCCACGGAAATTCAGGAGGAA 540
consensus_5435#1      GAGCTGG----------------------------------------------------- 482
                       * *                                                        

consensus_5435#0      GAGCTGGATACATTAATCACAGGCGAAGTCATGTGTAATTCAGAACCCATANATCCTGNA 600
consensus_5435#1      ------------------------------------------------------------
                                                                                  

consensus_5435#0      ATAACCGT 608
consensus_5435#1      --------