These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5435#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 608 fasta sequence [ACTTCACTCAAGAAAATGAGATATACACTGCTGCCTAGTCTATCGATATCATTTTGCCTGATCGTCATTTGGCCGAATAAATTTTTCAATTGTGAAGACAGTTGTCAAAAATTGCAGGAGTATGACAAAGTAATTTTTGAAAATGTTTCGTATCGATATTCTATTCATAACAAATATTCAATGCGAATTAGGCGTCATCAATTACATCCAGTTGTGAAGGGTGATTTTGAAGAAGTCACTAGTGAACAAACTGTTATCCCAAAATTTTCGTTTGAATATTACAATAATCATGTCGATCATTTTAATATTTCGCCTACTGGTGTAATAAACTTTCCCGTAGGATTAGTTACCTTTACTATGCCAGAAATTCAATCTTCTCAGTTACAGATCTTGAATGAAGAGGAATTAATCGCTCTCAGATGGTCATTTCAACCAAAAGACTATAGTACAGAGGATACAATCAATATAGCTTCTTTGATATATCCAAATGGAAAGATATCATTGTATTATGAGAAGATTCCCACGGAAATTCAGGAGGAAGAGCTGGATACATTAATCACAGGCGAAGTCATGTGTAATTCAGAACCCATANATCCTGNAATAACCGT] [+] EMBL CD153265 [ACTTCACTCAAGAAAATGAGATATACACTGCTGCCTAGTCTATCGATATCATTTTGCCTGATCGTCATTTGGCCGAATAAATTTTTCAATTGTGAAGACAGTTGTCAAAAATTGCAGGAGTATGACAAAGTAATTTTTGAAAATGTTTCGTATCGATATTCTATTCATAACAAATATTCAATGCGAATTAGGCGTCATCAATTACATCCAGTTGTGAAGGGTGATTTTGAAGAAGTCACTAGTGAACAAACTGTTATCCCAAAATTTTCGTTTGAATATTACAATAATCATGTCGATCATTTTAATATTTCGCCTACTGGTGTAATAAACTTTCCCGTAGGATTAGTTACCTTTACTATGCCAGAAATTCAATCTTCTCAGTTACAGATCTTGAATGAAGAGGAATTAATCGCTCTCAGATGGTCATTTCAACCAAAAGACTATAGTACAGAGGATACAATCAATATAGCTTCTTTGATATATCCAAATGGAAAGATATCATTGTATTATGAGAAGATTCCCACGGAAATTCAGGAGGAAGAGCTGGATACATTAATCACAGGCGAAGTCATGTGTAATTCAGAACCCATANATCCTGNAATAACCGT] consensusID : consensus_5435#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 482 fasta sequence [ACTTCACTCAAGAAAATGAGATATACACTGCTGCCTAGTCTATCGATATCATTTTGCCTGATCGTCATTTGGCCGAATAAATTTTTCAATTGT-GAAAACAGTAGTCCCCAATTGCAGGAGTATGACAAAGTAATTTTTGAAAATGTTTCGTATCGATATTCTATTCATAACAAATATTCAATGCGAATTAGGCGTCATCAATTACATCCAGTTGTGAAGGGTGATTTTGAAGAAGTCACTAGTGAACAAACTGTTATCCCAAAATTTTCGTTTGAATATTACAATAATCATGTCGATCATTTTAATATTTCGCCTACTGGTGTAATAAACTTTCCCGTAGGATTAGTTACCTTTACTATGCCAGAAATTCAATCTTCTCAGTTACAGATCTTGAATGAAGAGGAATTAATCGCTCTCAGATGGTCATTTCAACCAAAAGACTATAGTACAGATTCCCACGGAAATTCAGGAGGAAGAGCTGG] [+] EMBL CD112237 [ACTTCACTCAAGAAAATGAGATATACACTGCTGCCTAGTCTATCGATATCATTTTGCCTGATCGTCATTTGGCCGAATAAATTTTTCAATTGT GAAAACAGTAGTCCCCAATTGCAGGAGTATGACAAAGTAATTTTTGAAAATGTTTCGTATCGATATTCTATTCATAACAAATATTCAATGCGAATTAGGCGTCATCAATTACATCCAGTTGTGAAGGGTGATTTTGAAGAAGTCACTAGTGAACAAACTGTTATCCCAAAATTTTCGTTTGAATATTACAATAATCATGTCGATCATTTTAATATTTCGCCTACTGGTGTAATAAACTTTCCCGTAGGATTAGTTACCTTTACTATGCCAGAAATTCAATCTTCTCAGTTACAGATCTTGAATGAAGAGGAATTAATCGCTCTCAGATGGTCATTTCAACCAAAAGACTATAGTACAGATTCCCACGGAAATTC ] [+] EMBL CD112074 [ CTTCACTCAAGAAAATGAGATATACACTGCTGCCTAGTCTATCGATATCATTTTGCCTGATCGTCATTTGGCCGAATAAATTTTTCAATTGTAGAAGACAGTTGTCAAAAATTGCAGGAGTATGACAAAGTAATTTTTGAAAATGTTTCGTATCGATATTCTATTCATAACAAATATTCAATGCGAATTAGGCGTCATCAATTACATCCAGTTGTGAAGGGTGATTTTGAAGAAGTCACTAGTGAACAAACTGTTATCCCAAAATTTTCGTTTGAATATTACAATAATCATGTCGATCATTTTAATATTTCGCCTACTGGTGTAATAAACTTTCCCGTAGGATTAGTTACCTTTACTATGCCAGAAATTCAATCTTCTCAGTTACAGATCTTGAATGAAGAGGAATTAATCGCTCTCAGATGGTCATTTCAACCAAAAGACTATAGTACAGATTCCCACGGAAATTCAGGAGGAAGAGCTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5435#0 ACTTCACTCAAGAAAATGAGATATACACTGCTGCCTAGTCTATCGATATCATTTTGCCTG 60 consensus_5435#1 ACTTCACTCAAGAAAATGAGATATACACTGCTGCCTAGTCTATCGATATCATTTTGCCTG 60 ************************************************************ consensus_5435#0 ATCGTCATTTGGCCGAATAAATTTTTCAATTGTGAAGACAGTTGTCAAAAATTGCAGGAG 120 consensus_5435#1 ATCGTCATTTGGCCGAATAAATTTTTCAATTGTGAAAACAGTAGTCCCCAATTGCAGGAG 120 ************************************ ***** *** *********** consensus_5435#0 TATGACAAAGTAATTTTTGAAAATGTTTCGTATCGATATTCTATTCATAACAAATATTCA 180 consensus_5435#1 TATGACAAAGTAATTTTTGAAAATGTTTCGTATCGATATTCTATTCATAACAAATATTCA 180 ************************************************************ consensus_5435#0 ATGCGAATTAGGCGTCATCAATTACATCCAGTTGTGAAGGGTGATTTTGAAGAAGTCACT 240 consensus_5435#1 ATGCGAATTAGGCGTCATCAATTACATCCAGTTGTGAAGGGTGATTTTGAAGAAGTCACT 240 ************************************************************ consensus_5435#0 AGTGAACAAACTGTTATCCCAAAATTTTCGTTTGAATATTACAATAATCATGTCGATCAT 300 consensus_5435#1 AGTGAACAAACTGTTATCCCAAAATTTTCGTTTGAATATTACAATAATCATGTCGATCAT 300 ************************************************************ consensus_5435#0 TTTAATATTTCGCCTACTGGTGTAATAAACTTTCCCGTAGGATTAGTTACCTTTACTATG 360 consensus_5435#1 TTTAATATTTCGCCTACTGGTGTAATAAACTTTCCCGTAGGATTAGTTACCTTTACTATG 360 ************************************************************ consensus_5435#0 CCAGAAATTCAATCTTCTCAGTTACAGATCTTGAATGAAGAGGAATTAATCGCTCTCAGA 420 consensus_5435#1 CCAGAAATTCAATCTTCTCAGTTACAGATCTTGAATGAAGAGGAATTAATCGCTCTCAGA 420 ************************************************************ consensus_5435#0 TGGTCATTTCAACCAAAAGACTATAGTACAGAGGATACAATCAATATAGCTTCTTTGATA 480 consensus_5435#1 TGGTCATTTCAACCAAAAGACTATAGTACAG-----ATTCCCACGGAAATTCAGGAGGAA 475 ******************************* * ** * * * * consensus_5435#0 TATCCAAATGGAAAGATATCATTGTATTATGAGAAGATTCCCACGGAAATTCAGGAGGAA 540 consensus_5435#1 GAGCTGG----------------------------------------------------- 482 * * consensus_5435#0 GAGCTGGATACATTAATCACAGGCGAAGTCATGTGTAATTCAGAACCCATANATCCTGNA 600 consensus_5435#1 ------------------------------------------------------------ consensus_5435#0 ATAACCGT 608 consensus_5435#1 -------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||