These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5439#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 437 fasta sequence [TACCCTTGCTTGAGTGCATGGATTCTAATGTATTGGCATCTCGTCCTACCAGAAGATATACAAAATGTGAATGCAGTAACTAAGATGTATGTTGTATACGCATTAACGACAGACAATGTGTCCAATTTAATTAAACTCTTCAAAATCAGTATTAATTACCTTATGTGCGTAGAAAACTCGATCCTATGAAATGGTTCTTTTCTTGGGAGTAAAAAGTTGGCGTTTTTAGGATTTGTGATTAAAATAATAGGCCATTCTTTGTTTGAGTCATTGAGTGAGAATTTCCTCACATCTACAAACGACACTAAATCGTTGTCAACAGCCACAATTCGGAAGTAACGATTATCACGCCAATCACCTAATTCCCATTCCCAATAACCTTGAGGCTGCAAAAAATACATCTTCTTAGCCAATCCAAACAACGTATGTAAATGAAC] [+] EMBL CD112057 [TACCCTTGCTTGAGTGCATGGATTCTAATGTATTGGCATCTCGTCCTACCAGAAGATATACAAAATGTGAATGCAGTAACTAAGATGTATGTTGTATACGCATTAACGACAGACAATGTGTCCAATTTAATTAAACTCTTCAAAATCAGTATTAATTACCTTATGTGCGTAGAAAACTCGATCCTATGAAATGGTTCTTTTCTTGGGAGTAAAAAGTTGGCGTTTTTAGGATTTGTGATTAAAATAATAGGCCATTCTTTGTTTGAGTCATTGAGTGAGAATTTCCTCACATCTACAAACGACACTAAATCGTTGTCAACAGCCACAATTCGGAAGTAACGATTATCACGCCAATCACCTAATTCCCATTCCCAATAACCTTGAGGCTGCAAAAAATACATCTTCTTAGCCAATCCAAACAACGTATGTAAATGAAC] [+] EMBL CD112110 [TACCCTTGCTTGAGTGCATGGATTCTAATGTATTGGCATCTCGTCCTACCAGAAGATATACAAAATGTGAATGCAGTGACTAAGATGTATGTTGTATACGCATTAACGACAGACAATGTGTCCAATTTAATTAAACTCTTCAAAATCAGTATTAATTACCTTATGTGCGTAGAAAACTCGATCCTATGAAATGGTTCTTTTCTTGGGAGTAAAAAGTTGGCGTTTTTAGGATTTGTGATTAAAATAATAGGCCATTCTTTGTTTGAGTCATTGAGTGAGAATTTCCTCACATCTACAAACGACACTAAATCGTTGTCAACAGCCACAATTCGGAAGTAACGATTATCACGCCAATCACCTAATTCCCATTCCCAATAACCTTGAGGCTGCAAAAAATACATCTTCTTAGCCAATCCAAACAAAGTATGTAAATG ] consensusID : consensus_5439#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 347 fasta sequence [GGCATCCTTAGCTGTGACTTCAATCACGTGAAATGAATACGGATTGGCTGACCACTGAGATGTATTCCATGGAAGTACATATAAAGGTGTTGAATTACCACTCTCCAGTGATTTGGCTGGTTCAGCGTATCCTTGATGAATGCCATTGATTGACACAGAAACTCTTAGAATAGGCGATAGTGTCCCAACTAAAATTCTTATGTGCGTAGAAAACTCGATCCTATAAAATGGTTCTTTTCTTGGGAGTAAAAAGATGGCGTTTTTAGGGTTTGTGATTAAAATAATAGGCCCCTCTTTGTTTGAGTCATCGAGAGAGAATTTCTTCACATCTACAAACGACACTATAT] [-] EMBL CD202436 [GGCATCCTTAGCTGTGACTTCAATCACGTGAAATGAATACGGATTGGCTGACCACTGAGATGTATTCCATGGAAGTACATATAAAGGTGTTGAATTACCACTCTCCAGTGATTTGGCTGGTTCAGCGTATCCTTGATGAATGCCATTGATTGACACAGAAACTCTTAGAATAGGCGATAGTGTCCCAACTAAAATTCTTATGTGCGTAGAAAACTCGATCCTATAAAATGGTTCTTTTCTTGGGAGTAAAAAGATGGCGTTTTTAGGGTTTGTGATTAAAATAATAGGCCCCTCTTTGTTTGAGTCATCGAGAGAGAATTTCTTCACATCTACAAACGACACTATAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5439#0 --------------TACCCTTGCTTGAGTGCA-TGGATTCTAATGTATTGGCATCT---- 41 consensus_5439#1 GGCATCCTTAGCTGTGACTTCAATCACGTGAAATGAATACGGATTGGCTGACCACTGAGA 60 * * * * *** * ** ** * ** ** * ** consensus_5439#0 --CGTCCTACCAGAAGATATACAAAA-TGTGAA----------TGCAGTAACTAAGATG- 87 consensus_5439#1 TGTATTCCATGGAAGTACATATAAAGGTGTTGAATTACCACTCTCCAGTGATTTGGCTGG 120 * * * * * *** *** *** * * **** * * * ** consensus_5439#0 TATGTTGTATACGC-ATTAACGACAGACAATGTGTCCAATTTAATTAAACTCTTCAAAA- 145 consensus_5439#1 TTCAGCGTATCCTTGATGAATGCCATTGATTGACACAGAAACTCTTAGAATAGGCGATAG 180 * **** * ** ** * ** * ** * * *** * * * * * consensus_5439#0 --TCAGTATTAATTACCTTATGTGCGTAGAAAACTCGATCCTATGAAATGGTTCTTTTCT 203 consensus_5439#1 TGTCCCAACTAAAATTCTTATGTGCGTAGAAAACTCGATCCTATAAAATGGTTCTTTTCT 240 ** * *** **************************** *************** consensus_5439#0 TGGGAGTAAAAAGTTGGCGTTTTTAGGATTTGTGATTAAAATAATAGGCCATTCTTTGTT 263 consensus_5439#1 TGGGAGTAAAAAGATGGCGTTTTTAGGGTTTGTGATTAAAATAATAGGCCCCTCTTTGTT 300 ************* ************* ********************** ******** consensus_5439#0 TGAGTCATTGAGTGAGAATTTCCTCACATCTACAAACGACACTAAATCGTTGTCAACAGC 323 consensus_5439#1 TGAGTCATCGAGAGAGAATTTCTTCACATCTACAAACGACACTATAT------------- 347 ******** *** ********* ********************* ** consensus_5439#0 CACAATTCGGAAGTAACGATTATCACGCCAATCACCTAATTCCCATTCCCAATAACCTTG 383 consensus_5439#1 ------------------------------------------------------------ consensus_5439#0 AGGCTGCAAAAAATACATCTTCTTAGCCAATCCAAACAACGTATGTAAATGAAC 437 consensus_5439#1 ------------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||