cluster # 5444

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Schistosoma mansoni
cluster # 5444 cluster # 5444 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5444#0 length = 679 sequences # 2

consensus_5444#1 length = 242 sequences # 1

consensusID : consensus_5444#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 679
fasta sequence

                              [TTTTCAAAGAAAAATAGCTTCATGTAGTAGTGTTCATCATCATAACTCTAGTATATCTGGTTCTAGCACTTCTTCATCTAGTATGCACAATAACAGTTCCTTGTGTAAAAATGACTGTGATCCATCATTCGAAGGCTCTCAACAAATGTACCAACTGAATAATGTTCAGTTAACAGAACGCTTGGAATTTCTCAGAAATCGACAATTGCAATTGATGTCAAGGATACAAAGCTTGAAGCAATCGAGATTGGTACTTATGCATCATATGCAACAGCTATATGAAACACAGAAGATGAAATCAAAAAATGAAAACCTTTATCAAGAGACTGACAATCAAGGTTGCTATGAATGTCGTGAAAATATTTCACATCCTCTCGTTGATAAAACACCAGATCTTCATACATCTTCATGGTTATCACATACAATAAAACATCGTTCTGACAATTTCCCATTAAATTCAAACATGATGAGATCATTGGTTGATCGTGAATGTCAAACCAGTTTCAATGCAGAATCACAGGAAAAACTGAGTAATAATAGACTAGATCATGAGTTTTGTTTATCAACATTCATGAAACATAATTCATTACCTATTTATTCTAATAACGATAGTTGTAGTTACGCTGATAATGTAATTTCAAATACTACATCCAATATTTCAGCATTGGCAATGATAGCA]

[+] EMBL CD121332             [TTTTCAAAGAAAAATAGCTTCATGTAGTAGTGTTCATCATCATAACTCTAGTATATCTGGTTCTAGCACTTCTTCATCTAGTATGCACAATAACAGTTCCTTGTGTAAAAATGACTGTGATCCATCATTCGAAGGCTCTCAACAAATGTACCAACTGAATAATGTTCAGTTAACAGAACGCTTGGAATTTCTCAGAAATCGACAATTGCAATTGATGTCAAGGATACAAAGCTTGAAGCAATCGAGATTGGTACTTATGCATCATATGCAACAGCTATATGAAACACAGAAGATGAAATCAAAAAATGAAAACCTTTATCAAGAGACTGACAATCAAGGTTGCTATGAATGTCGTGAAAATATTTCACATCCTCTCGTTGATAAAACACCAGATCTTCATACATCTTCATGGTTATCACATACAATAAAACATCGTTCTGACAATTTCCCATTAAATTCAAACATGATGAGATCATTGG                                                                                                                                                                                                        ]
[-] EMBL CD121294             [                                                                                                                                                                                                                                                                                                                                                                                                                                     ACAATAACACATCGTTCTGACAATTTCCCATTAAATTCAAACATGATGAGATCATTGGTTGATCGTGAATGTCAAACCAGTTTCAATGCAGAATCACAGGAAAAACTGAGTAATAATAGACTAGATCATGAGTTTTGTTTATCAACATTCATGAAACATAATTCATTACCTATTTATTCTAATAACGATAGTTGTAGTTACGCTGATAATGTAATTTCAAATACTACATCCAATATTTCAGCATTGGCAATGATAGCA]




>consensus_5444#0
TTTTCAAAGAAAAATAGCTTCATGTAGTAGTGTTCATCATCATAACTCTAGTATATCTGG
TTCTAGCACTTCTTCATCTAGTATGCACAATAACAGTTCCTTGTGTAAAAATGACTGTGA
TCCATCATTCGAAGGCTCTCAACAAATGTACCAACTGAATAATGTTCAGTTAACAGAACG
CTTGGAATTTCTCAGAAATCGACAATTGCAATTGATGTCAAGGATACAAAGCTTGAAGCA
ATCGAGATTGGTACTTATGCATCATATGCAACAGCTATATGAAACACAGAAGATGAAATC
AAAAAATGAAAACCTTTATCAAGAGACTGACAATCAAGGTTGCTATGAATGTCGTGAAAA
TATTTCACATCCTCTCGTTGATAAAACACCAGATCTTCATACATCTTCATGGTTATCACA
TACAATAAAACATCGTTCTGACAATTTCCCATTAAATTCAAACATGATGAGATCATTGGT
TGATCGTGAATGTCAAACCAGTTTCAATGCAGAATCACAGGAAAAACTGAGTAATAATAG
ACTAGATCATGAGTTTTGTTTATCAACATTCATGAAACATAATTCATTACCTATTTATTC
TAATAACGATAGTTGTAGTTACGCTGATAATGTAATTTCAAATACTACATCCAATATTTC
AGCATTGGCAATGATAGCA

consensusID : consensus_5444#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 242
fasta sequence

                              [CCAATAATGATACAACTGATGGTGTCACTTCAACAAATTTCACAGAGGAACAAAAGAATATGATACTTAAAATAGAAGCCTATAACAGGGAAATTATAAAAGAGATAGAAAGACTGCAAACGGAAAGTGTGAAAACTAATGATGCTATAAGTCTTTTAAAAGAACACTTAAATATTTCACAAAGTTCCTTCAAATCGCCTCAGGCTTTTCAAAGAAAAATAGCTTCATGTAGTAGTGTTCAT]

[+] EMBL CD111993             [CCAATAATGATACAACTGATGGTGTCACTTCAACAAATTTCACAGAGGAACAAAAGAATATGATACTTAAAATAGAAGCCTATAACAGGGAAATTATAAAAGAGATAGAAAGACTGCAAACGGAAAGTGTGAAAACTAATGATGCTATAAGTCTTTTAAAAGAACACTTAAATATTTCACAAAGTTCCTTCAAATCGCCTCAGGCTTTTCAAAGAAAAATAGCTTCATGTAGTAGTGTTCAT]




>consensus_5444#1
CCAATAATGATACAACTGATGGTGTCACTTCAACAAATTTCACAGAGGAACAAAAGAATA
TGATACTTAAAATAGAAGCCTATAACAGGGAAATTATAAAAGAGATAGAAAGACTGCAAA
CGGAAAGTGTGAAAACTAATGATGCTATAAGTCTTTTAAAAGAACACTTAAATATTTCAC
AAAGTTCCTTCAAATCGCCTCAGGCTTTTCAAAGAAAAATAGCTTCATGTAGTAGTGTTC
AT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5444#0      TTTTCAAAGAAAAATAGCTTCATGTAGTAGTGTTCATCATCATAACTCTAGTATATCTGG 60
consensus_5444#1      ------------------------------------------------------------
                                                                                  

consensus_5444#0      TTCTAGCACTTCTTCATCTAGTATGCACAATAACAGTTCCTTGTGTAAAAATGACTGTGA 120
consensus_5444#1      ------------------------------------------------------------
                                                                                  

consensus_5444#0      TCCATCATTCGAAGGCTCTCAACAAATGTACCAACTGAATAATGTTCAGTTAACAGAACG 180
consensus_5444#1      ------------------CCAATAATGATAC-AACTGA-TGGTGTCACTTCAACA----- 35
                                         *** **   *** ****** *  ***    * ****     

consensus_5444#0      CTTGGAATTTCTCAGAAATCGACAATTGCAATTGATGTCAAGGATACAAAGCTTGAAGCA 240
consensus_5444#1      -----AATTTCACAGAGG--AACAAAAGAATATGATACTTAAAATA-GAAGCCTATAACA 87
                           ****** ****     ****  * *  ****    *  ***  **** *  * **

consensus_5444#0      ATCGAGATTGGTACTTATGCATCATATGCAACAGCTATATGAAACACAGAAGATGAAATC 300
consensus_5444#1      G--------GGAAATTATAAAAGAGATAGAAAGACTGCA---AACGGAAAGTGTGAAAAC 136
                               ** * ****  *  * **  **   **  *   ***  * *   ***** *

consensus_5444#0      AAAAAATGAAA-ACCTTTATCAAGAGACTGACAATCAAGGTTGCTATGAATGTCGTGAAA 359
consensus_5444#1      TAATGATGCTATAAGTCTTTTAAAAGA---ACACTTAAATATTTCACAAAGTTCCTTCAA 193
                       **  ***  * *  * * * ** ***   *** * **   *   *  **  ** *  **

consensus_5444#0      ATATTTCACATCCTCTCGTTGATAAAACACCAGATCTTCATACATCTTCATGGTTATCAC 419
consensus_5444#1      AT----CGCCTCAGGCTTTTCAAAGAAAAATAG--CTTCATGTAG--TAGTGTTCAT--- 242
                      **    * * **      ** * * ** *  **  ******  *   *  ** * **   

consensus_5444#0      ATACAATAAAACATCGTTCTGACAATTTCCCATTAAATTCAAACATGATGAGATCATTGG 479
consensus_5444#1      ------------------------------------------------------------
                                                                                  

consensus_5444#0      TTGATCGTGAATGTCAAACCAGTTTCAATGCAGAATCACAGGAAAAACTGAGTAATAATA 539
consensus_5444#1      ------------------------------------------------------------
                                                                                  

consensus_5444#0      GACTAGATCATGAGTTTTGTTTATCAACATTCATGAAACATAATTCATTACCTATTTATT 599
consensus_5444#1      ------------------------------------------------------------
                                                                                  

consensus_5444#0      CTAATAACGATAGTTGTAGTTACGCTGATAATGTAATTTCAAATACTACATCCAATATTT 659
consensus_5444#1      ------------------------------------------------------------
                                                                                  

consensus_5444#0      CAGCATTGGCAATGATAGCA 679
consensus_5444#1      --------------------