These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5444#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 679 fasta sequence [TTTTCAAAGAAAAATAGCTTCATGTAGTAGTGTTCATCATCATAACTCTAGTATATCTGGTTCTAGCACTTCTTCATCTAGTATGCACAATAACAGTTCCTTGTGTAAAAATGACTGTGATCCATCATTCGAAGGCTCTCAACAAATGTACCAACTGAATAATGTTCAGTTAACAGAACGCTTGGAATTTCTCAGAAATCGACAATTGCAATTGATGTCAAGGATACAAAGCTTGAAGCAATCGAGATTGGTACTTATGCATCATATGCAACAGCTATATGAAACACAGAAGATGAAATCAAAAAATGAAAACCTTTATCAAGAGACTGACAATCAAGGTTGCTATGAATGTCGTGAAAATATTTCACATCCTCTCGTTGATAAAACACCAGATCTTCATACATCTTCATGGTTATCACATACAATAAAACATCGTTCTGACAATTTCCCATTAAATTCAAACATGATGAGATCATTGGTTGATCGTGAATGTCAAACCAGTTTCAATGCAGAATCACAGGAAAAACTGAGTAATAATAGACTAGATCATGAGTTTTGTTTATCAACATTCATGAAACATAATTCATTACCTATTTATTCTAATAACGATAGTTGTAGTTACGCTGATAATGTAATTTCAAATACTACATCCAATATTTCAGCATTGGCAATGATAGCA] [+] EMBL CD121332 [TTTTCAAAGAAAAATAGCTTCATGTAGTAGTGTTCATCATCATAACTCTAGTATATCTGGTTCTAGCACTTCTTCATCTAGTATGCACAATAACAGTTCCTTGTGTAAAAATGACTGTGATCCATCATTCGAAGGCTCTCAACAAATGTACCAACTGAATAATGTTCAGTTAACAGAACGCTTGGAATTTCTCAGAAATCGACAATTGCAATTGATGTCAAGGATACAAAGCTTGAAGCAATCGAGATTGGTACTTATGCATCATATGCAACAGCTATATGAAACACAGAAGATGAAATCAAAAAATGAAAACCTTTATCAAGAGACTGACAATCAAGGTTGCTATGAATGTCGTGAAAATATTTCACATCCTCTCGTTGATAAAACACCAGATCTTCATACATCTTCATGGTTATCACATACAATAAAACATCGTTCTGACAATTTCCCATTAAATTCAAACATGATGAGATCATTGG ] [-] EMBL CD121294 [ ACAATAACACATCGTTCTGACAATTTCCCATTAAATTCAAACATGATGAGATCATTGGTTGATCGTGAATGTCAAACCAGTTTCAATGCAGAATCACAGGAAAAACTGAGTAATAATAGACTAGATCATGAGTTTTGTTTATCAACATTCATGAAACATAATTCATTACCTATTTATTCTAATAACGATAGTTGTAGTTACGCTGATAATGTAATTTCAAATACTACATCCAATATTTCAGCATTGGCAATGATAGCA] consensusID : consensus_5444#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 242 fasta sequence [CCAATAATGATACAACTGATGGTGTCACTTCAACAAATTTCACAGAGGAACAAAAGAATATGATACTTAAAATAGAAGCCTATAACAGGGAAATTATAAAAGAGATAGAAAGACTGCAAACGGAAAGTGTGAAAACTAATGATGCTATAAGTCTTTTAAAAGAACACTTAAATATTTCACAAAGTTCCTTCAAATCGCCTCAGGCTTTTCAAAGAAAAATAGCTTCATGTAGTAGTGTTCAT] [+] EMBL CD111993 [CCAATAATGATACAACTGATGGTGTCACTTCAACAAATTTCACAGAGGAACAAAAGAATATGATACTTAAAATAGAAGCCTATAACAGGGAAATTATAAAAGAGATAGAAAGACTGCAAACGGAAAGTGTGAAAACTAATGATGCTATAAGTCTTTTAAAAGAACACTTAAATATTTCACAAAGTTCCTTCAAATCGCCTCAGGCTTTTCAAAGAAAAATAGCTTCATGTAGTAGTGTTCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5444#0 TTTTCAAAGAAAAATAGCTTCATGTAGTAGTGTTCATCATCATAACTCTAGTATATCTGG 60 consensus_5444#1 ------------------------------------------------------------ consensus_5444#0 TTCTAGCACTTCTTCATCTAGTATGCACAATAACAGTTCCTTGTGTAAAAATGACTGTGA 120 consensus_5444#1 ------------------------------------------------------------ consensus_5444#0 TCCATCATTCGAAGGCTCTCAACAAATGTACCAACTGAATAATGTTCAGTTAACAGAACG 180 consensus_5444#1 ------------------CCAATAATGATAC-AACTGA-TGGTGTCACTTCAACA----- 35 *** ** *** ****** * *** * **** consensus_5444#0 CTTGGAATTTCTCAGAAATCGACAATTGCAATTGATGTCAAGGATACAAAGCTTGAAGCA 240 consensus_5444#1 -----AATTTCACAGAGG--AACAAAAGAATATGATACTTAAAATA-GAAGCCTATAACA 87 ****** **** **** * * **** * *** **** * * ** consensus_5444#0 ATCGAGATTGGTACTTATGCATCATATGCAACAGCTATATGAAACACAGAAGATGAAATC 300 consensus_5444#1 G--------GGAAATTATAAAAGAGATAGAAAGACTGCA---AACGGAAAGTGTGAAAAC 136 ** * **** * * ** ** ** * *** * * ***** * consensus_5444#0 AAAAAATGAAA-ACCTTTATCAAGAGACTGACAATCAAGGTTGCTATGAATGTCGTGAAA 359 consensus_5444#1 TAATGATGCTATAAGTCTTTTAAAAGA---ACACTTAAATATTTCACAAAGTTCCTTCAA 193 ** *** * * * * * ** *** *** * ** * * ** ** * ** consensus_5444#0 ATATTTCACATCCTCTCGTTGATAAAACACCAGATCTTCATACATCTTCATGGTTATCAC 419 consensus_5444#1 AT----CGCCTCAGGCTTTTCAAAGAAAAATAG--CTTCATGTAG--TAGTGTTCAT--- 242 ** * * ** ** * * ** * ** ****** * * ** * ** consensus_5444#0 ATACAATAAAACATCGTTCTGACAATTTCCCATTAAATTCAAACATGATGAGATCATTGG 479 consensus_5444#1 ------------------------------------------------------------ consensus_5444#0 TTGATCGTGAATGTCAAACCAGTTTCAATGCAGAATCACAGGAAAAACTGAGTAATAATA 539 consensus_5444#1 ------------------------------------------------------------ consensus_5444#0 GACTAGATCATGAGTTTTGTTTATCAACATTCATGAAACATAATTCATTACCTATTTATT 599 consensus_5444#1 ------------------------------------------------------------ consensus_5444#0 CTAATAACGATAGTTGTAGTTACGCTGATAATGTAATTTCAAATACTACATCCAATATTT 659 consensus_5444#1 ------------------------------------------------------------ consensus_5444#0 CAGCATTGGCAATGATAGCA 679 consensus_5444#1 -------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||