cluster # 5458

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 5458 cluster # 5458 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5458#0 length = 711 sequences # 2

consensus_5458#1 length = 385 sequences # 1

consensusID : consensus_5458#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 711
fasta sequence

                              [TTCGAGCTCGGTACCCGATAGTGTTGGTCTGCGATCACGATCGGATAACAAAGTAGTTGGATAATAATGTGACATTTTGCCTAGGTTCAATAAAATTCTACTCGGTAGATGATATGCCCAAGGTGCTTCTTGTATATGCACTAGTAGAGCGATTAAAAACGGTGGATTCGGTAGATGTAGACCTAATAAACACTGGTGAGTTGGATGGAAAAATACGAATCCATACGGATTGCTACTTCCATAAATACGACTTGTTAAAGATCTGGAATTAAGCCAACAATAACCATTTGCCATATCTGAGTCAGTACATGGTGAACTAGAACAACGATCGTTTGCAAAGTAAAGTTTTTCAAAGAAACAATCATGTGAACGAAATGGTGCTGAACCGAAGGGTCTATTATACGTTTGAGAGTTGAAAGATTCGAAATTAACATCACTTTTAACTTGTTTCTCGGCATAATTCACTAAAGCTTGATATATAAGCCAGTATTGATAAAATATCTCCATTGGTGGTAGTCTTTCATCAAAACGTCTACGTAACAGAATTACGATTTCTTCTTGACCAAACTGATAAAAGCCGCTCGATGAGAAACACCAAGTTGATTGCCTCAAACAGCAACTTAATTCAGTTGGATGAACACGAACATGGAGATTTCGAGTGAGAGCTATTGTTATGCCAGGAGACACATGATCTGACTTANGGGAACTTTC]

[+] EMBL CD129073             [TTCGAGCTCGGTACCCGATAGTGTTGGTCTGCGATCACGATCGGATAACAAAGTAGTTGGATAATAATGTGACATTTTGCCTAGGTTCAATAAAATTCTACTCGGTAGATGATATGCCCAAGGTGCTTCTTGTATATGCACTAGTAGAGCGATTAAAAACGGTGGATTCGGTAGATGTAGACCTAATAAACACTGGTGAGTTGGATGGAAAAATACGAATCCATACGGATTGCTACTTCCATAAATACGACTTGTTAAAGATCTGGAATTAAGCCAACAATAACCATTTGCCATATCTGAGTCAGTACATGGTGAACTAGAACAACGATCGTTTGCAAAGTAAAGTTTTTCAAAGAAACAATCATGTGAACGAAATGGTGCTGAACCGAAGGGTCTATTATACGTTTGAGAGTTGAAAGATTCGAAATTAACATCACTTTTAACTTGTTTCTCGGCATAATTCACTAAAGCTTGATATATAAGCCAGTATTGATAAAATATCTCCATTGGTGGTAGTCTTTCATCAAAACGTCTACGTAACAGAATTACGATTTCTTCTTGACCAAACTGATAAAAGCCGCTCGATGAGAAACACCAAGTTGATTGCCTCAAACAGCAACTTAATTCAGTTGGATGAACACGAACATGGAGATTTCGAGTGAGAGCTATTGTTATGCCAGGAGACACATGATCTGACTTANGGGAACTTTC]
[+] EMBL CD129062             [                                            ATAACAAAGTAGTTGGATAATAATGTGACATTTTGCCTAGGTTCAATAAAATTCTACTCGGTAGATGATATGCCCAAGGTGCTTCTTGTATATGCACTAGTAGAGCGATTAAAAACGGTGGATTCGGTAGATGTAGACCTAATAAACACTGGTGAGTTGGATGGAAAAATACGAATCCATACGGATTGCTACTTCCATAAATACGACTTGTTAAAGATCTGGAATTAAGCCAACAATAACCATTTGCCATATCTGAGTCAGTACATGGTGAACTAGAACAACGATCGTTTGCAAAGTAAAGTTTTTCAAAGAAACAATCATGTGAACGAAATGGTGCTGAACCGAAGGGTCTATTATACGTTTGAGAGTTGAAAGATTCGAAATTAACATCACTTTTAACTTGTTTCTCGGCATAATTCA                                                                                                                                                                                                                                                       ]




>consensus_5458#0
TTCGAGCTCGGTACCCGATAGTGTTGGTCTGCGATCACGATCGGATAACAAAGTAGTTGG
ATAATAATGTGACATTTTGCCTAGGTTCAATAAAATTCTACTCGGTAGATGATATGCCCA
AGGTGCTTCTTGTATATGCACTAGTAGAGCGATTAAAAACGGTGGATTCGGTAGATGTAG
ACCTAATAAACACTGGTGAGTTGGATGGAAAAATACGAATCCATACGGATTGCTACTTCC
ATAAATACGACTTGTTAAAGATCTGGAATTAAGCCAACAATAACCATTTGCCATATCTGA
GTCAGTACATGGTGAACTAGAACAACGATCGTTTGCAAAGTAAAGTTTTTCAAAGAAACA
ATCATGTGAACGAAATGGTGCTGAACCGAAGGGTCTATTATACGTTTGAGAGTTGAAAGA
TTCGAAATTAACATCACTTTTAACTTGTTTCTCGGCATAATTCACTAAAGCTTGATATAT
AAGCCAGTATTGATAAAATATCTCCATTGGTGGTAGTCTTTCATCAAAACGTCTACGTAA
CAGAATTACGATTTCTTCTTGACCAAACTGATAAAAGCCGCTCGATGAGAAACACCAAGT
TGATTGCCTCAAACAGCAACTTAATTCAGTTGGATGAACACGAACATGGAGATTTCGAGT
GAGAGCTATTGTTATGCCAGGAGACACATGATCTGACTTANGGGAACTTTC

consensusID : consensus_5458#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 385
fasta sequence

                              [TTACATCTTCGATACCATTATTATGTGTAGTAGTATTCGTATCCGATTCACTTTTAACTACATTCAAATGTGCATAGAATCCATTTATATGAAATAATAATTCTGGTAATGGGATACATCTTTGTTTAGGCGTAAATGTCATGAAATCTGGATAGATAAATGGTTTTATATCAGTGAATAATTGTAAGAAGCTTTCTCCATCTAGTTTACAATCAAATAAAATCTTGCGATCACGATCGGATAACAAAGTAGTTGGATAATAATGTGACATTTTGCCTAGGTTCAATAAAATTCTACTCGGTAGATGATATGCCCAAGGTGCTTCTTGTATATGCACTAGTAGAGCGATTAAAAACGGTGGATTCGGTAGATGTAGACCTAATAG]

[-] EMBL CD169509             [TTACATCTTCGATACCATTATTATGTGTAGTAGTATTCGTATCCGATTCACTTTTAACTACATTCAAATGTGCATAGAATCCATTTATATGAAATAATAATTCTGGTAATGGGATACATCTTTGTTTAGGCGTAAATGTCATGAAATCTGGATAGATAAATGGTTTTATATCAGTGAATAATTGTAAGAAGCTTTCTCCATCTAGTTTACAATCAAATAAAATCTTGCGATCACGATCGGATAACAAAGTAGTTGGATAATAATGTGACATTTTGCCTAGGTTCAATAAAATTCTACTCGGTAGATGATATGCCCAAGGTGCTTCTTGTATATGCACTAGTAGAGCGATTAAAAACGGTGGATTCGGTAGATGTAGACCTAATAG]




>consensus_5458#1
TTACATCTTCGATACCATTATTATGTGTAGTAGTATTCGTATCCGATTCACTTTTAACTA
CATTCAAATGTGCATAGAATCCATTTATATGAAATAATAATTCTGGTAATGGGATACATC
TTTGTTTAGGCGTAAATGTCATGAAATCTGGATAGATAAATGGTTTTATATCAGTGAATA
ATTGTAAGAAGCTTTCTCCATCTAGTTTACAATCAAATAAAATCTTGCGATCACGATCGG
ATAACAAAGTAGTTGGATAATAATGTGACATTTTGCCTAGGTTCAATAAAATTCTACTCG
GTAGATGATATGCCCAAGGTGCTTCTTGTATATGCACTAGTAGAGCGATTAAAAACGGTG
GATTCGGTAGATGTAGACCTAATAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5458#0      TTCGAGCTCGGTACCCGATAGTGTTGGTCTGCGATCACGATCGGATAACAAAGTAGTTGG 60
consensus_5458#1      ---------------------------------------------TTACATCTTCGATAC 15
                                                                   * ***   * * *  

consensus_5458#0      -ATAATAATGTGACATTTTGCCTAGGTTCAATAAAATTCTACTCGGTAGATGATATGCCC 119
consensus_5458#1      CATTATTATGTGTAGTAGTATTCGTATCCGATTCACTTTTAACTACATTCAAATGTGCAT 75
                       ** ** *****   *  *       * * **  * ** **           ** ***  

consensus_5458#0      AAGGTGCTTCTTGTATATGCACTAGTAGAGCGATTAAAAACGGTGGATTCGGT--AGATG 177
consensus_5458#1      AGAA---TCCATTTATATGAAATAATAATTCTGGTAATGGGATACATCTTTGTTTAGGCG 132
                      *      * * * ****** * ** **   *   ***           *  **  **  *

consensus_5458#0      TAGACCTAATAAACACTGGTGAGTTGGATGGAAAAATACGAATCCATACGGATTGCTACT 237
consensus_5458#1      TAAATGTCATGAAATCTGGATAGATAAATGGTTTTATATCAGTGAATAATTGTAAGAAGC 192
                      ** *  * ** **  ****  ** *  ****    ***  * *  ***    *    *  

consensus_5458#0      TCCATAAATACGACTTGTTAAAGATCTGGAATTAAGCCAACAATAACCATTTGCCATATC 297
consensus_5458#1      TTTCTCCAT----CTAGTTTACAATC-AAATAAAATCTTGCGATCACGATCGG--ATAAC 245
                      *   *  **    ** *** *  ***   *   ** *   * ** ** **  *  *** *

consensus_5458#0      TGAGTCAGTACATGGTGAACTAGAACAACGATCGTTTGCAAAGTAAAGTTTTTCAAAGAA 357
consensus_5458#1      AAAGTAGTTGGATAATAA--TGTGACATTTTGCCTAGGTTCAATAAAATTCTACTCGGTA 303
                        ***   *  **  * *  *   ***     * *  *   * **** ** * *   * *

consensus_5458#0      ACAATCATGTGAACGAAATGGTGCTGAACCGAAGGGTCTATTATACGTTTGAGAGTTGAA 417
consensus_5458#1      G--ATGATATGCCCAAGGTGCTTCTTG--TATATGCACTAGTAGAGCGATTAAAAACGGT 359
                         ** ** **  * *  ** * **       * *  *** ** *    * * *   *  

consensus_5458#0      AGATTCGAAATTAACATCACTTTTAACTTGTTTCTCGGCATAATTCACTAAAGCTTGATA 477
consensus_5458#1      GGATTCGGTAGATGTAGACCTAATAG---------------------------------- 385
                       ******  *     *   **  **                                   

consensus_5458#0      TATAAGCCAGTATTGATAAAATATCTCCATTGGTGGTAGTCTTTCATCAAAACGTCTACG 537
consensus_5458#1      ------------------------------------------------------------
                                                                                  

consensus_5458#0      TAACAGAATTACGATTTCTTCTTGACCAAACTGATAAAAGCCGCTCGATGAGAAACACCA 597
consensus_5458#1      ------------------------------------------------------------
                                                                                  

consensus_5458#0      AGTTGATTGCCTCAAACAGCAACTTAATTCAGTTGGATGAACACGAACATGGAGATTTCG 657
consensus_5458#1      ------------------------------------------------------------
                                                                                  

consensus_5458#0      AGTGAGAGCTATTGTTATGCCAGGAGACACATGATCTGACTTANGGGAACTTTC 711
consensus_5458#1      ------------------------------------------------------