These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5474#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 451 fasta sequence [GTAGAACAAACAAGGATCATAAATCCAATAAACAGGGATCATAAATCCAACACACAGGAATCATAAACCCAATAAACAGGGATCATAAATACAACAAACAAGGATCATAAATACAACACACAGGAATCATAAATCCAACACACAAGGATCATTCATTTCATTTACAATGATGATATTGTCATATCTAGAAAAATATTGGAAATCTATAATCATCCTATCAAATCTCATATTTATTGTATCCGGTATTGTATTCTTATCATTAGGTATTAATGAATTGAATTACATATCTAAGTTTCTTATCATTTTACATAATACTAAACCAATAATCATTCCAATTATGATAACTACTGGGACTATTGGTTCAATTGCTTCTCTTATAGGATTCATTGGATTATTTCAAAAGAAACAATTTATTATATTACTTCATATTGGTGGTTTAATTATAGCGGCG] [+] EMBL CD189295 [GTAGAACAAACAAGGATCATAAATCCAATAAACAGGGATCATAAATCCAACACACAGGAATCATAAACCCAATAAACAGGGATCATAAATACAACAAACAAGGATCATAAATACAACACACAGGAATCATAAATCCAACACACAAGGATCATTCATTTCATTTACAATGATGATATTGTCATATCTAGAAAAATATTGGAAATCTATAATCATCCTATCAAATCTCATATTTATTGTATCCGGTATTGTATTCTTATCATTAGGTATTAATGAATTGAATTACATATCTAAGTTTCTTATCATTTTACATAATACTAAACCAATAATCATTCCAATTATGATAACTACTGGGACTATTGGTTCAATTGCTTCTCTTATAGGATTCATTGGATTATTTCAAAAGAAACAATTTATTATATTACTTCATATTGGTGGTTTAATTATAGCGGCG] consensusID : consensus_5474#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 176 fasta sequence [CATTCTATGGGGGTCATATTTATTGGATCCGGAATTGTATTCTTATCATTAGGTATTAATGAATTGAATTACATATCTAAGTTTCTTATCATTTTACATAATACTAAACCAATAATCATTCCAATTATGATAACTACTGGGACTATTGNGTCAATTGCTTCTCTTATAGGATTCCC] [+] EMBL CD062653 [CATTCTATGGGGGTCATATTTATTGGATCCGGAATTGTATTCTTATCATTAGGTATTAATGAATTGAATTACATATCTAAGTTTCTTATCATTTTACATAATACTAAACCAATAATCATTCCAATTATGATAACTACTGGGACTATTGNGTCAATTGCTTCTCTTATAGGATTCCC] consensusID : consensus_5474#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 90 fasta sequence [TCACATATCTAAATGGGGGAGGTTTTACATAATACTAAACCAATAATCATTCCAATTATGATAACTACTGGGACTATTGGTTCAATTGCT] [+] EMBL CD062724 [TCACATATCTAAATGGGGGAGGTTTTACATAATACTAAACCAATAATCATTCCAATTATGATAACTACTGGGACTATTGGTTCAATTGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5474#0 GTAGAACAAACAAGGATCATAAATCCAATAAACAGGGATCATAAATCCAACACACAGGAA 60 consensus_5474#2 ------------------------------------------------------------ consensus_5474#1 ------------------------------------------------------------ consensus_5474#0 TCATAAACCCAATAAACAGGGATCATAAATACAACAAACAAGGATCATAAATACAACACA 120 consensus_5474#2 ------------------------------------------------------------ consensus_5474#1 ------------------------------------------------------------ consensus_5474#0 CAGGAATCATAAATCCAACACACAAGGATCATTCATTTCATTTACAATGATGATATTGTC 180 consensus_5474#2 ------------------------------------------------------------ consensus_5474#1 ------------------------------------------------------------ consensus_5474#0 ATATCTAGAAAAATATTGGAAATCTATAATCATCCTATCAAATCTCATATTTATTGTATC 240 consensus_5474#2 ------------------------------------------------------------ consensus_5474#1 ------------------------------CATTCTAT-GGGGGTCATATTTATTGGATC 29 consensus_5474#0 CGGTATTGTATTCTTATCATTAGGTATTAATGAATTGAATTACATATCTAAGTTTCTTAT 300 consensus_5474#2 ---------------------------------------TCACATATCTAAATGGGGGAG 21 consensus_5474#1 CGGAATTGTATTCTTATCATTAGGTATTAATGAATTGAATTACATATCTAAGTTTCTTAT 89 * ********** * * consensus_5474#0 CATTTTACATAATACTAAACCAATAATCATTCCAATTATGATAACTACTGGGACTATTGG 360 consensus_5474#2 -GTTTTACATAATACTAAACCAATAATCATTCCAATTATGATAACTACTGGGACTATTGG 80 consensus_5474#1 CATTTTACATAATACTAAACCAATAATCATTCCAATTATGATAACTACTGGGACTATTGN 149 ********************************************************* consensus_5474#0 TTCAATTGCTTCTCTTATAGGATTCATTGGATTATTTCAAAAGAAACAATTTATTATATT 420 consensus_5474#2 TTCAATTGCT-------------------------------------------------- 90 consensus_5474#1 GTCAATTGCTTCTCTTATAGGATTCCC--------------------------------- 176 ********* consensus_5474#0 ACTTCATATTGGTGGTTTAATTATAGCGGCG 451 consensus_5474#2 ------------------------------- consensus_5474#1 ------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||