Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 5474 cluster # 5474       Sequences # 3       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5474#0 length = 451 sequences # 1  
consensus_5474#1 length = 176 sequences # 1  
consensus_5474#2 length = 90 sequences # 1  

consensusID : consensus_5474#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 451
fasta sequence
                              [GTAGAACAAACAAGGATCATAAATCCAATAAACAGGGATCATAAATCCAACACACAGGAATCATAAACCCAATAAACAGGGATCATAAATACAACAAACAAGGATCATAAATACAACACACAGGAATCATAAATCCAACACACAAGGATCATTCATTTCATTTACAATGATGATATTGTCATATCTAGAAAAATATTGGAAATCTATAATCATCCTATCAAATCTCATATTTATTGTATCCGGTATTGTATTCTTATCATTAGGTATTAATGAATTGAATTACATATCTAAGTTTCTTATCATTTTACATAATACTAAACCAATAATCATTCCAATTATGATAACTACTGGGACTATTGGTTCAATTGCTTCTCTTATAGGATTCATTGGATTATTTCAAAAGAAACAATTTATTATATTACTTCATATTGGTGGTTTAATTATAGCGGCG]

[+] EMBL CD189295             [GTAGAACAAACAAGGATCATAAATCCAATAAACAGGGATCATAAATCCAACACACAGGAATCATAAACCCAATAAACAGGGATCATAAATACAACAAACAAGGATCATAAATACAACACACAGGAATCATAAATCCAACACACAAGGATCATTCATTTCATTTACAATGATGATATTGTCATATCTAGAAAAATATTGGAAATCTATAATCATCCTATCAAATCTCATATTTATTGTATCCGGTATTGTATTCTTATCATTAGGTATTAATGAATTGAATTACATATCTAAGTTTCTTATCATTTTACATAATACTAAACCAATAATCATTCCAATTATGATAACTACTGGGACTATTGGTTCAATTGCTTCTCTTATAGGATTCATTGGATTATTTCAAAAGAAACAATTTATTATATTACTTCATATTGGTGGTTTAATTATAGCGGCG]


>consensus_5474#0 GTAGAACAAACAAGGATCATAAATCCAATAAACAGGGATCATAAATCCAACACACAGGAA TCATAAACCCAATAAACAGGGATCATAAATACAACAAACAAGGATCATAAATACAACACA CAGGAATCATAAATCCAACACACAAGGATCATTCATTTCATTTACAATGATGATATTGTC ATATCTAGAAAAATATTGGAAATCTATAATCATCCTATCAAATCTCATATTTATTGTATC CGGTATTGTATTCTTATCATTAGGTATTAATGAATTGAATTACATATCTAAGTTTCTTAT CATTTTACATAATACTAAACCAATAATCATTCCAATTATGATAACTACTGGGACTATTGG TTCAATTGCTTCTCTTATAGGATTCATTGGATTATTTCAAAAGAAACAATTTATTATATT ACTTCATATTGGTGGTTTAATTATAGCGGCG



consensusID : consensus_5474#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 176
fasta sequence
                              [CATTCTATGGGGGTCATATTTATTGGATCCGGAATTGTATTCTTATCATTAGGTATTAATGAATTGAATTACATATCTAAGTTTCTTATCATTTTACATAATACTAAACCAATAATCATTCCAATTATGATAACTACTGGGACTATTGNGTCAATTGCTTCTCTTATAGGATTCCC]

[+] EMBL CD062653             [CATTCTATGGGGGTCATATTTATTGGATCCGGAATTGTATTCTTATCATTAGGTATTAATGAATTGAATTACATATCTAAGTTTCTTATCATTTTACATAATACTAAACCAATAATCATTCCAATTATGATAACTACTGGGACTATTGNGTCAATTGCTTCTCTTATAGGATTCCC]


>consensus_5474#1 CATTCTATGGGGGTCATATTTATTGGATCCGGAATTGTATTCTTATCATTAGGTATTAAT GAATTGAATTACATATCTAAGTTTCTTATCATTTTACATAATACTAAACCAATAATCATT CCAATTATGATAACTACTGGGACTATTGNGTCAATTGCTTCTCTTATAGGATTCCC



consensusID : consensus_5474#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 90
fasta sequence
                              [TCACATATCTAAATGGGGGAGGTTTTACATAATACTAAACCAATAATCATTCCAATTATGATAACTACTGGGACTATTGGTTCAATTGCT]

[+] EMBL CD062724             [TCACATATCTAAATGGGGGAGGTTTTACATAATACTAAACCAATAATCATTCCAATTATGATAACTACTGGGACTATTGGTTCAATTGCT]


>consensus_5474#2 TCACATATCTAAATGGGGGAGGTTTTACATAATACTAAACCAATAATCATTCCAATTATG ATAACTACTGGGACTATTGGTTCAATTGCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5474#0      GTAGAACAAACAAGGATCATAAATCCAATAAACAGGGATCATAAATCCAACACACAGGAA 60
consensus_5474#2      ------------------------------------------------------------
consensus_5474#1      ------------------------------------------------------------
                                                                                  

consensus_5474#0      TCATAAACCCAATAAACAGGGATCATAAATACAACAAACAAGGATCATAAATACAACACA 120
consensus_5474#2      ------------------------------------------------------------
consensus_5474#1      ------------------------------------------------------------
                                                                                  

consensus_5474#0      CAGGAATCATAAATCCAACACACAAGGATCATTCATTTCATTTACAATGATGATATTGTC 180
consensus_5474#2      ------------------------------------------------------------
consensus_5474#1      ------------------------------------------------------------
                                                                                  

consensus_5474#0      ATATCTAGAAAAATATTGGAAATCTATAATCATCCTATCAAATCTCATATTTATTGTATC 240
consensus_5474#2      ------------------------------------------------------------
consensus_5474#1      ------------------------------CATTCTAT-GGGGGTCATATTTATTGGATC 29
                                                                                  

consensus_5474#0      CGGTATTGTATTCTTATCATTAGGTATTAATGAATTGAATTACATATCTAAGTTTCTTAT 300
consensus_5474#2      ---------------------------------------TCACATATCTAAATGGGGGAG 21
consensus_5474#1      CGGAATTGTATTCTTATCATTAGGTATTAATGAATTGAATTACATATCTAAGTTTCTTAT 89
                                                             * ********** *     * 

consensus_5474#0      CATTTTACATAATACTAAACCAATAATCATTCCAATTATGATAACTACTGGGACTATTGG 360
consensus_5474#2      -GTTTTACATAATACTAAACCAATAATCATTCCAATTATGATAACTACTGGGACTATTGG 80
consensus_5474#1      CATTTTACATAATACTAAACCAATAATCATTCCAATTATGATAACTACTGGGACTATTGN 149
                        ********************************************************* 

consensus_5474#0      TTCAATTGCTTCTCTTATAGGATTCATTGGATTATTTCAAAAGAAACAATTTATTATATT 420
consensus_5474#2      TTCAATTGCT-------------------------------------------------- 90
consensus_5474#1      GTCAATTGCTTCTCTTATAGGATTCCC--------------------------------- 176
                       *********                                                  

consensus_5474#0      ACTTCATATTGGTGGTTTAATTATAGCGGCG 451
consensus_5474#2      -------------------------------
consensus_5474#1      -------------------------------
                                                     




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)