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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5481#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 848 fasta sequence
[GCACTATCACATGNTGAGATGACTTTTCCTCTCATAATTAGATATTAATCAATGGCATTGAATTGACAAGGCACCACTGAAAACAATTTTGATGTTGATGAATTCACGAAATTACCCAAACAGTCTTATTATTCGACAACAAATAGTGATTGTCAAGGTAACGACATTTTGATTATTGTTCATATCTGTCTAAAATAAAACAGTACACCTCTACTGTGTCAGGAGGAAAACTATTTTTAAATATCATGCAAAAAACAAACATTCCTGACTTATTTCATCAAAATTATTATTCAGTTATGAATGTGTAGAATTTTACTCATTCGTCAGTATTCAATGTTTAGTGTAAGTTAAGTATACACTTGACATTATCTTATCACGGTGATTTTCTTCCATATTTGAACACAGAAGATATAAAATACAAGCTCAACTAATGTGAGGGAATAGATCATTGAAATACACAGATGAAAATCAGTCTTCTATTTGAGTATTGACAAACATTTTAGTTTTCAGATACAATGATCAATGTTATAGTTTTGAATGTGTCTGGTATAAGAAATCGTTCTCCATTTTTAACAGTCCACTTTCGGCGGAATGCATTATATCCCTCTGACTACAATGATTTGAGAACTTAATCTATGAAATTGAGCACAATTGATTCTACTTCAATGTACTCAATAGGAAAATCATTATCCTTTTTGATCTAGACATCTATTGACAGTCAGTGTTCTAATGTGGTATACAAATAGAATGGATGTGACATTGTTCAGAAGTTACAATTTTATAAAAAAAACGACGGTGAAATCGTTTAACGAAATGTGCTTATTGNTACAAATCCATGTGTAAAGTGC]
[-] EMBL CD117850 [GCACTATCACATGNTGAGATGACTTTTCCTCTCATAATTAGATATTAATCAATGGCATTGAATTGACAAGGCACCACTGAAAACAATTTTGATGTTGATGAATTCACGAAATTACCCAAACAGTCTTATTATTCGACAACAAATAGTGATTGTCAAGGTAACGACATTTTGATTATTGTTCATATCTGTCTAAAATAAAACAGTACACCTCTACTGTGTCAGGAGGAAAACTATTTTTAAATATCATGCAAAAAACAAACATTCCTGACTTATTTCATCAAAATTATTATTCAGTTATGAATGTGTAGAATTTTACTCATTCGTCAGTATTCAATGTTTAGTGTAAGTTA ]
[+] EMBL CD085243 [ TTATTTCATCAAAATTATTATTCAGTTATGAATGTGTAGAATTTTATTCATTCGTCAGTATTCAATGTTTAGTGTAAGTTAAGTATACACTTGACATTATCTTATCACGGTGATTTTCTTCCATATTTGAACACAGAAGATATAAAATACAAGCTCAACTAATGTGAGGGAATAGATCATTGAAATACACAGATGAAAATCAGTCTTCTATTTGAGTATTGACAAACATTTTAGTTTTCAGATACAATGATCAATGTTATAGTTTTGAATGTGTCTGGTATAAGAAATCGTTCTCCATTTTTAACAGTCCACTTTCGGCGGAATGCATTATATCCCTCTGACTACAATGATTTGAGAACTTAATCTATGAAATTGAGCACAATTGATTCTACTTCAATGTACTCAATAGGAAAATCATTATCCTTTTTGATCTAGACATCTATTGACAGTCAGTGTTCTAATGTGGTATACAAATAGAATGGATGTGACATTGTTCAGAAGTTACAATTTTATAAAAAAAACGACGGTGAAATCGTTTAACGAAATGTGCTTATTGNTACAAATCCATGTGTAAAGTGC]
consensusID : consensus_5481#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 350 fasta sequence
[TGAATGTGTCTGCTAAAAGAAATCGTTCTCCACTTTTAACAGTTCACTTTCGATGGAATGTATTATATTCCTCTGATTACAATGATTTGAGAACTCAATCTATGAAACTGAGCACAATGGATTCTATTTCAATGTACTCAATAGGAAAATCATTATCCTTATTGATCTGGACATCTATTGACAGTTAGTGTTATGGTGTATACAAATAGAATGGATGTGACATTGTTCAGAAGTTACAATGTTATAAAAGAGAAAACGACAGTGAAATCGTTTAACAAAATGTGCTTATTGTAACAAAATCCATGTGTAATAGAGTATTTGTTGCTATGCAATCATTACAATTTGTGCTA]
[+] EMBL CD117551 [TGAATGTGTCTGCTAAAAGAAATCGTTCTCCACTTTTAACAGTTCACTTTCGATGGAATGTATTATATTCCTCTGATTACAATGATTTGAGAACTCAATCTATGAAACTGAGCACAATGGATTCTATTTCAATGTACTCAATAGGAAAATCATTATCCTTATTGATCTGGACATCTATTGACAGTTAGTGTTATGGTGTATACAAATAGAATGGATGTGACATTGTTCAGAAGTTACAATGTTATAAAAGAGAAAACGACAGTGAAATCGTTTAACAAAATGTGCTTATTGTAACAAAATCCATGTGTAATAGAGTATTTGTTGCTATGCAATCATTACAATTTGTGCTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5481#0 GCACTATCACATGNTGAGATGACTTTTCCTCTCATAATTAGATATTAATCAATGGCATTG 60
consensus_5481#1 ------------------------------------------------------------
consensus_5481#0 AATTGACAAGGCACCACTGAAAACAATTTTGATGTTGATGAATTCACGAAATTACCCAAA 120
consensus_5481#1 ------------------------------------------------------------
consensus_5481#0 CAGTCTTATTATTCGACAACAAATAGTGATTGTCAAGGTAACGACATTTTGATTATTGTT 180
consensus_5481#1 ------------------------------------------------------------
consensus_5481#0 CATATCTGTCTAAAATAAAACAGTACACCTCTACTGTGTCAGGAGGAAAACTATTTTTAA 240
consensus_5481#1 ------------------------------------------------------------
consensus_5481#0 ATATCATGCAAAAAACAAACATTCCTGACTTATTTCATCAAAATTATTATTCAGTTATGA 300
consensus_5481#1 ------------------------------------------------------------
consensus_5481#0 ATGTGTAGAATTTTACTCATTCGTCAGTATTCAATGTTTAGTGTAAGTTAAGTATACACT 360
consensus_5481#1 ------------------------------------------------------------
consensus_5481#0 TGACATTATCTTATCACGGTGATTTTCTTCCATATTTGAACACAGAAGATATAAAATACA 420
consensus_5481#1 ------------------------------------------------------------
consensus_5481#0 AGCTCAACTAATGTGAGGGAATAGATCATTGAAATACACAGATGAAAATCAGTCTTCTAT 480
consensus_5481#1 ------------------------------------------------------------
consensus_5481#0 TTGAGTATTGACAAACATTTTAGTTTTCAGATACAATGATCAATGTTATAGTTTTGAATG 540
consensus_5481#1 ------------------------------------------------------TGAATG 6
******
consensus_5481#0 TGTCTGGTATAAGAAATCGTTCTCCATTTTTAACAGTCCACTTTCGGCGGAATGCATTAT 600
consensus_5481#1 TGTCTGCTAAAAGAAATCGTTCTCCACTTTTAACAGTTCACTTTCGATGGAATGTATTAT 66
****** ** **************** ********** ******** ****** *****
consensus_5481#0 ATCCCTCTGACTACAATGATTTGAGAACTTAATCTATGAAATTGAGCACAATTGATTCTA 660
consensus_5481#1 ATTCCTCTGATTACAATGATTTGAGAACTCAATCTATGAAACTGAGCACAATGGATTCTA 126
** ******* ****************** *********** ********** *******
consensus_5481#0 CTTCAATGTACTCAATAGGAAAATCATTATCCTTTTTGATCTAGACATCTATTGACAGTC 720
consensus_5481#1 TTTCAATGTACTCAATAGGAAAATCATTATCCTTATTGATCTGGACATCTATTGACAGTT 186
********************************* ******* ****************
consensus_5481#0 AGTGTTCTAATGTGGTATACAAATAGAATGGATGTGACATTGTTCAGAAGTTACAATTTT 780
consensus_5481#1 AGTGTTATGGTG---TATACAAATAGAATGGATGTGACATTGTTCAGAAGTTACAATGTT 243
****** * ** ****************************************** **
consensus_5481#0 ATAAAA---AAAACGACGGTGAAATCGTTTAACGAAATGTGCTTATTGNTACAAA-TCCA 836
consensus_5481#1 ATAAAAGAGAAAACGACAGTGAAATCGTTTAACAAAATGTGCTTATTGTAACAAAATCCA 303
****** ******** *************** ************** ***** ****
consensus_5481#0 TGTGTAA-AGTGC---------------------------------- 848
consensus_5481#1 TGTGTAATAGAGTATTTGTTGCTATGCAATCATTACAATTTGTGCTA 350
******* ** *
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||