These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5491#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 621 fasta sequence [GAGTTCTTCTTGATCCAAGTATCCTTACAGACGAAGTAACTC-AGCTTAACTATTGCTGTACTGGTAAGTTTACATGAAATATTAAAAGTGGGTTTTGTGGAGATATTTTTAACTATATAAAGTTACATGAAATAATTTGATTAATGCATTTAATATTATTCTATTTAAAACGTTTTGTAAATTTGTGAAATATTCATATTGTGACAATTAAAGCTTGGTCTACTGATTGAGGATCGATGAAAAAAACCACAGTAGTTTCGTTTTAAGCATGAAATCTATATTGTAGAAAAGGAGGTTAAACTGTTTTGTAGGTGTCATGTGTGACGATCTTCAGACCTCACCTAATTTTATCAATCGTGATATACGTACATTTCATACTCTTCGATACTTATATACAAATTGTAAATAATAGAAGATCAGTACCATCTTATTTCGAGATTATTCGGAAAATTACAATAAATATAACACTTATTCTCAGCATCCATTAGTTGTTGCTCTACGGATGGTTGTTTCGCTTTCCTGGTATCGAGTCAATGCATTTTTAGAATTAGTCAAATGCTCTGAATTGTCAGAGTAACTATTGAAGATATTAGCTGTTCTTAGCTCTGGTTGCTTTATGAN] [+] EMBL CD129851 [GAGTTCTTCTTGATCCAAGTATCCTTACAGACGAAGTAACTC AGCTTAACTATTGCTGTACTGGTAAGTTTACATGAAATATTAAAAGTGGGTTTTGTGGAGATATTTTTAACTATATAAAGTTACATGAAATAATTTGATTAATGCATTTAATATTATTCTATTTAAAACGTTTTGTAAATTTGTGAAATATTCATATTGTGACAATTAAAGCTTGGTCTACTGATTGAGGATCGATGAAAAAAACCACAGTAGTTTCGTTTTAAGCATGAAATCTATATTGTAGAAAAGGAGGTTAAACTGTTTTGTAGGTGTCATGTGTGACGATCTTCAGACCTCACCTAATTTTATCAATCGTGATATACGTACATTTCATACTCTTCGATACTTATATACAAATTGTAAATAATAGAAGATCAGTACCATCTTATTTCGAGATTATTCGGAAAATTACAATAAATATAACACTTATTCTCAGCATCCATTAGTTGTTGCTCTACGGATGGTTGTTTCGCTTTCCTGGTATCGAGTCAATGCATTTTTAGAATTAGTCAAATGCTCTGAATTGTCAGAGTAACTATTGAAGATATTAGCTGTTCTTAGCTCTGGTTGCTTTATGAN] [+] EMBL CD129869 [GAGTTCTTCTTGATCCAAGTATCCTTACAGACGAAGCAACTCAAGCTTAACTATTGCTGTACTGGTAAGTTTACATGAAATATTAAAAGTGGGTTTTGTGGAGATATTTTTAACTACATAAAATTACATGAAATAATTTGATTAATGCATTTAATATTATTCTATTTAAAACGTTTTGTAAATTTGTGAAATATTCATATTGTGACAATTAAAGCTTGGTCTACTGATTGAGGATCGATGAAAAAAACCACAGTAGTTTCGTTTTAAGCATGAAATCTATATTGTAGAAAAGGAGGTTAAACTGTTTTGTAGGTGTCATGTGTGACGATCTTCAGACCTCACCTAATTTTATCAATCGTGATATACTTACATTTCATACTCTTCGATACTTATATACAAATTGTAAATAATAGAAGATCAGTACCATCTTATTTCGAGATTATTCGGAAAATTACAATAAATATAACACTTATTCTCAGCATCCATTAGTTGTTGCTCTACGGATGGTTGTTTCGCTTTCCTGGTATCGAGTCAATGCATTTT ] consensusID : consensus_5491#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 610 fasta sequence [ATTAATCGCCCACGATTTGAGTCAAATTATACAAGCAATTTATTGTCATCAGACAATAATACAACACAACAACAACTGATTCGTTCATCAAATGATCGTCAGATAACAACTAATACGATATCAGAGATGAATCAAAGCCAACAATCATGTCAACAGTTCCCTAAACGTCATGCAATTTTAAGTGCAACAGATAGTTTGCGTTCACGTTCTATTGATGAATGCATGCCAAGTGGTAGTATTAACTCAAACACTGAACAACGATCAGGTAATGTTTTGAGTCAAACCAGAGACGAAACAGTCGATAGTCGGATTATGAATGGAACTGAGTTCGATGATGCCAGTGAGGATAAAAATCAAATTAATCATCAGGAACAGTTATTACCTAACCCCATTCAAACTGAACAAAAGACATCGACCGGAGTTCTTCTTGATCCAAGTATCCTTACAGACGAAGCAACTCAAGCTTTAACTATTGCTGTACTGACGACTTTGGTACGTTATACCACTGACGAGAACGAGTCAAGAGTACTATATGAATTTTTAGCAGATGCTTCTATGGTTTTTCCTCGAGTATTTCCTGTCATACATAGTTTATTGGATTCAAAAATTA] [+] EMBL CD088883 [ATTAATCGCCCACGATTTGAGTCAAATTATACAAGCAATTTATTGTCATCAGACAATAATACAACACAACAACAACTGATTCGTTCATCAAATGATCGTCAGATAACAACTAATACGATATCAGAGATGAATCAAAGCCAACAATCATGTCAACAGTTCCCTAAACGTCATGCAATTTTAAGTGCAACAGATAGTTTGCGTTCACGTTCTATTGATGAATGCATGCCAAGTGGTAGTATTAACTCAAACACTGAACAACGATCAGGTAATGTTTTGAGTCAAACCAGAGACGAAACAGTCGATAGTCGGATTATGAATGGAACTGAGTTCGATGATGCCAGTGAGGATAAAAATCAAATTAATCATCAGGAACAGTTATTACCTAACCCCATTCAAACTGAACAAAAGACATCGACCGGAGTTCTTCTTGATCCAAGTATCCTTACAGACGAAGCAACTCAAGCTTTAACTATTGCTGTACTGACGACTTTGGTACGTTATACCACTGACGAGAACGAGTCAAGAGTACTATATGAATTTTTAGCAGATGCTTCTATGGTTTTTCCTCGAGTATTTCCTGTCATACATAGTTTATTGGATTCAAAAATTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5491#0 GAGTTCTTCTTGATCCAAGTATCCTTACAGACGAAGTAACTCAGCTTAACTATTGCTGTA 60 consensus_5491#1 --------ATTAATC-GCCCACGATTTGAGTCAAATTA-TACAAGCAATTTATTGTCAT- 49 ** *** * ** ** * ** ** ** * ***** * consensus_5491#0 CTGGTAAGTTTACATGAAATATTAAAAGTGGGTTTTGTGGAGATATTTTTAACTATATAA 120 consensus_5491#1 CAGACAA--TAATACAACACAACAACAACTGATTC-GTTCATCAAATGATCGTCAGATAA 106 * * ** * * * * * * ** * * ** ** * * * * * **** consensus_5491#0 AGTTACATGAAATAATTTGATTAATGCATTTAATATTATTCT-ATTTAAAACGTTTTGTA 179 consensus_5491#1 ---CAACTAATACGATATCAGAGATGAATCAAAGCCAACAATCATGTCAACAGTTCCCTA 163 * * * * ** * * *** ** ** * * ** * ** *** ** consensus_5491#0 AAT-TTGTGAAATATTCATATTGTGACAATTAAAGCTTG-GTCTACTGATTGAGGATCGA 237 consensus_5491#1 AACGTCATGCAATTTTAAG--TGCAACAGATA--GTTTGCGTTCACGTTCTATTGATGAA 219 ** * ** *** ** * ** *** ** * *** ** ** * *** * consensus_5491#0 TGAAAAAAACCACAGTAGTTTCGTTTTAAGCATGAAAT--CTATATTGTAGAAAAGGAGG 295 consensus_5491#1 TGCATGCCAA-GTGGTAGTATTAACTCAAACACTGAACAACGATCAGGTAATGTTTTGAG 278 ** * * ***** * * ** ** ** * ** *** * consensus_5491#0 TTAAACT-GTTTTGTAGGTGTCATGTGT--GACGATCTTCAGACCTCACCT-AATTTTAT 351 consensus_5491#1 TCAAACCAGAGACGAAACAGTCGATAGTCGGATTATGAATGGAACTGAGTTCGATGATGC 338 * **** * * * *** ** ** ** ** ** * * ** * consensus_5491#0 CAATCGTGATATACGTACATTTCATACTCTTCGATACTTATATACAAATTGTAAATAA-- 409 consensus_5491#1 CAGTGAGGATAAAAATCAAATTAATCATCAGGAACAGTTATTACCTAACCCCATTCAAAC 398 ** * **** * * * ** ** ** * * **** * ** * ** consensus_5491#0 TAGAAGATCAGTACCATCTTATTTCGAGATTATTCGGAAAATTACAATAAATATAACACT 469 consensus_5491#1 TGAACAAAAGACATCGACCGGAGTTCTTCTTGATCCAAGTATCCTTACAGACGAAGCAAC 458 * * * * * * * ** ** * ** * * * * ** consensus_5491#0 TATTCTCAGCATCCATTAGTTGTTGCTCTACGGATGG--TTGTTTCGCTTTCCTGGTATC 527 consensus_5491#1 T--------CAAGCTTTAACTATTGCTGTACTGACGACTTTGGTACGTTATACCACTGAC 510 * ** * *** * ***** *** ** * *** * ** * * * * * consensus_5491#0 GAGTCAATGCATTTTTAGAATTAGTCAAATGCTCTG-AATTGTCAGAGTAACTATTGA-- 584 consensus_5491#1 GAG--AACGAGTCAAGAGTACTATATGAATTTTTAGCAGATGCTTCTATGGTTTTTCCTC 568 *** ** * * ** * ** *** * * * ** * * ** consensus_5491#0 AGATATTAGCTGTTCTTAGC--TCTGGTTGCTTTATGAN--- 621 consensus_5491#1 GAGTATTTCCTGTCATACATAGTTTATTGGATTCAAAAATTA 610 **** **** * * * * * ** * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||