These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5494#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 491 fasta sequence [ATAAACATACTCTCATTTTTATCATTAATATGTACCGACAATTTATTCTCTGAATGCACAGTATGATTATTGATTTGATATAAAACAGGAAGAGATTTAGAAACCGAGTTCAAGTTCAAAGAATTTTCGAAAAGACATGGGAGTGAAGTACTCAGAAATACTTGTGGAGTATTACTGGATCCTTTTAAATTGTTTTCATCAGTTAGGTTTGAATCCGAAAAATCAACCGGAACATCAACTTTCGGCTGACTCCTAATAAAGCTACTTGGTGTAACGTTCTGTTGTTCAGCTATACACTTTAGAGAGTCCTCATCCGAATGAATAGCTGAGGAATCTTCATTCGACTTTCGAGTTGAAGCCATTTCTTCATTGTTCACTTTTTACAAAACCCATGTGGTCGACTGGCTGCAAGCACAGTAGAGTTGATGGTAACCGCAGTGAAGAAGCAAAGCTAAATCCCTTTATGCTATATGTGTACACTTAAGAAGATA] [+] EMBL CD161341 [ATAAACATACTCTCATTTTTATCATTAATATGTACCGACAATTTATTCTCTGAATGCACAGTATGATTATTGATTTGATATAAAACAGGAAGAGATTTAGAAACCGAGTTCAAGTTCAAAGAATTTTCGAAAAGACATGGGAGTGAAGTACTCAGAAATACTTGTGGAGTATTACTGGATCCTTTTAAATTGTTTTCATCAGTTAGGTTTGAATCCGAAAAATCAACCGGAACATCAACTTTCGGCTGACTCCTAATAAAGCTACTTGGTGTAACGTTCTGTTGTTCAGCTATACACTTTAGAGAGTCCTCATCCGAATGAATAGCTGAGGAATCTTCATTCGACTTTCGAGTTGAAGCCATTTCTTCATTGTTCACTTTTTACAAAACCCATGTGGTCGACTGGCTGCAAGCACAGTAGAGTTGATGGTAACCGCAGTGAAGAAGCAAAGCTAAATCCCTTTATGCTATATGTGTACACTTAAGAAGATA] consensusID : consensus_5494#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 329 fasta sequence [TACTCTCATTTTTATCATTAATATGTACCGACAATTTATTCTCTGAATGCACAGTATGATTATTGATTTGATATAAAACAGGAGGAGATTTAGAAACCGAGTTCAAGTTCAAAGAATCTGTAAGTAAAAAAAAATGGAAATTTTTCGAAAAGACATGGGAGTGAAGTACTCAGAAATACTTGTGGAGTATTACTGGATCCTTTTAAATTGTTTTCATCAGTTAGGTTTGAATTCGAAAAATCAACCGGAACATCAACTTTCGGCTGACTCCTAATAAAGCTACTTGGTGTAACGTTCTGTTGTTCAGCTATACACTTTAGAGAGTCCTC] [-] EMBL CD117796 [TACTCTCATTTTTATCATTAATATGTACCGACAATTTATTCTCTGAATGCACAGTATGATTATTGATTTGATATAAAACAGGAGGAGATTTAGAAACCGAGTTCAAGTTCAAAGAATCTGTAAGTAAAAAAAAATGGAAATTTTTCGAAAAGACATGGGAGTGAAGTACTCAGAAATACTTGTGGAGTATTACTGGATCCTTTTAAATTGTTTTCATCAGTTAGGTTTGAATTCGAAAAATCAACCGGAACATCAACTTTCGGCTGACTCCTAATAAAGCTACTTGGTGTAACGTTCTGTTGTTCAGCTATACACTTTAGAGAGTCCTC] [-] EMBL CD117768 [TACTCTCATTTTTATCATTAATATGTACCGACAATTTATTCTCTGAATGCACAGTATGATTATTGATTTGATATAAAACAGGAGGAGATTTAGAAACCGAGTTCAAGTTCAAAGAATCTGTAAGTAAAAAAAAATGGAAATTTTTCGAAAAGACATGGGAGTGAAGTACTCAGAAATACTTGTGGAGTATTACTGGATCCTTTTAAATTGTTTTCATCAGTTAGGTTTGAATTCGAAAAATCAACCGGAACATCAACTTTCGGCTGACTCCTAATAAAGCTACTTGGTGTAACGTTCTGTTGTTCAGCTATACACTTTAGAGAGTCCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5494#0 ATAAACATACTCTCATTTTTATCATTAATATGTACCGACAATTTATTCTCTGAATGCACA 60 consensus_5494#1 -------TACTCTCATTTTTATCATTAATATGTACCGACAATTTATTCTCTGAATGCACA 53 ***************************************************** consensus_5494#0 GTATGATTATTGATTTGATATAAAACAGGAAGAGATTTAGAAACCGAGTTCAAGTTCAAA 120 consensus_5494#1 GTATGATTATTGATTTGATATAAAACAGGAGGAGATTTAGAAACCGAGTTCAAGTTCAAA 113 ****************************** ***************************** consensus_5494#0 GAAT-------------------------TTTCGAAAAGACATGGGAGTGAAGTACTCAG 155 consensus_5494#1 GAATCTGTAAGTAAAAAAAAATGGAAATTTTTCGAAAAGACATGGGAGTGAAGTACTCAG 173 **** ******************************* consensus_5494#0 AAATACTTGTGGAGTATTACTGGATCCTTTTAAATTGTTTTCATCAGTTAGGTTTGAATC 215 consensus_5494#1 AAATACTTGTGGAGTATTACTGGATCCTTTTAAATTGTTTTCATCAGTTAGGTTTGAATT 233 *********************************************************** consensus_5494#0 CGAAAAATCAACCGGAACATCAACTTTCGGCTGACTCCTAATAAAGCTACTTGGTGTAAC 275 consensus_5494#1 CGAAAAATCAACCGGAACATCAACTTTCGGCTGACTCCTAATAAAGCTACTTGGTGTAAC 293 ************************************************************ consensus_5494#0 GTTCTGTTGTTCAGCTATACACTTTAGAGAGTCCTCATCCGAATGAATAGCTGAGGAATC 335 consensus_5494#1 GTTCTGTTGTTCAGCTATACACTTTAGAGAGTCCTC------------------------ 329 ************************************ consensus_5494#0 TTCATTCGACTTTCGAGTTGAAGCCATTTCTTCATTGTTCACTTTTTACAAAACCCATGT 395 consensus_5494#1 ------------------------------------------------------------ consensus_5494#0 GGTCGACTGGCTGCAAGCACAGTAGAGTTGATGGTAACCGCAGTGAAGAAGCAAAGCTAA 455 consensus_5494#1 ------------------------------------------------------------ consensus_5494#0 ATCCCTTTATGCTATATGTGTACACTTAAGAAGATA 491 consensus_5494#1 ------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||