These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5505#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 498 fasta sequence [TACGCAGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTACATTGAACAAAATCATATTGCTAATTATTATGAAGATAATATCTCACACTCCTTGAAACATAACAAGTAATAAAGGCGAACTACTGCGACTACTTGAAGACAGAATATAACGAAAAAATGTTACATCAAATATAATTTCAATTTTGAAATATATAGAAGGCCATTCGTTTTATTCCAGAATTCTGAAAGAATATATGGCCATATAGAATTCAACTTACACAAACTAAACTCGGAATAAACCGAGCAATATCAGAGTTAGGTATATATAAACGTCACAAGATCAATTGGACACATCATTAGGTTCAGAGTTAGACTTTGAAGTGATTTCTCCAGATGAGCATCCAAAAAGTTCTAGTCTACGTTTACGAACTTCCGTAAATTCCGAATCTTCAGATGCAAGGGGACATTTACCATCGGACTCTAACTGGGTTTTACATCA] [+] EMBL AI975689 [TACGCAGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTACATTGAACAAAATCATATTGCTAATTATTATGAAGATAATATCTCACACTCCTTGAAACATAACAAGTAATAAAGGCGAACTACTGCGACTACTTGAAGACAGAATATAACGAAAAAATGTTACATCAAATATAATTTCAATTTTGAAATATATAGAAGGCCATTCGTTTTATTCCAGAATTCTGAAAGAATATATGGCCATATAGAATTCAACTTACACAAACTAAACTCGGAATAAACCGAGCAATATCAGAGTTAGGTATATATAAACGTCACAAGATCAATTGGACACATCATTAGGTTCAGAGTTAGACTTTGAAGTGATTTCTCCAGATGAGCATCCAAAAAGTTCTAGTCTACGTTTACGAACTTCCGTAAATTCCGAATCTTCAGATGCAAGGGGACATTTACCATCGGACTCTAACTGGGTTTTACATCA] [-] EMBL SM680 [ CGAAAAAATGTTACATCAAATATAATTTCAATTTTGAAATATATAGAAGGCCATTCGTTTTATTCCAGAATTCTGAAAGAATATATGGCCATATAGAATTCAACTTACACAAACTAAACTCGGAATAAACCGAGCAATATCAGAGTTAGGTATATATAAACGTCACAAGATCAATTGGACACATCATTAGGTTCAGAGTTAGACTTTGAAGTGATTTCTCCAGATGAGCATCCAAAAAGTTCTAGTCTACGTTTACGAACTTCCtcgt ] consensusID : consensus_5505#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 400 fasta sequence [TTTTTTTTTTTTTTTTCAATGTTACATCAAATATAATTTCAACTTTGAAATATATAGAAGGCCATTCGTTTTATTCAAGAATTCTGAAAGAATATATGGCCATATAGAATTCAACTTACACAAACTAAACTCGGAATAAACCGAGCAATATCAGAGTTAGGTATATATAAACGTCACAAGATCAATTGGACACATCATTAGGTTCAGAGTTAGACTTTGAAGTGATTTCTCCAGATGAGCATCCGAAAAGTTCTAGTCTACGTTTACGAACTTCCGTAAATTCCGAATCTTCAGATGCAAGGGGACATTTACCATCGGACTCTAACTGAGGTTTTACATCATTAATTAGGGCTTCCTTTTCGTCATTATTTGATTCCACATTGTCGGTGTTGAAGGGAGT] [+] EMBL AI395832 [TTTTTTTTTTTTTTTTCAATGTTACATCAAATATAATTTCAACTTTGAAATATATAGAAGGCCATTCGTTTTATTCAAGAATTCTGAAAGAATATATGGCCATATAGAATTCAACTTACACAAACTAAACTCGGAATAAACCGAGCAATATCAGAGTTAGGTATATATAAACGTCACAAGATCAATTGGACACATCATTAGGTTCAGAGTTAGACTTTGAAGTGATTTCTCCAGATGAGCATCCGAAAAGTTCTAGTCTACGTTTACGAACTTCCGTAAATTCCGAATCTTCAGATGCAAGGGGACATTTACCATCGGACTCTAACTGAGGTTTTACATCATTAATTAGGGCTTCCTTTTCGTCATTATTTGATTCCACATTGTCGGTGTTGAAGGGAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5505#0 TACGCAGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTAC 60 consensus_5505#1 ------------------------------------------------------------ consensus_5505#0 ATTGAACAAAATCATATTGCTAATTATTATGAAGATAATATCTCACACTCCTTGAAACAT 120 consensus_5505#1 ------------------------------------------------------------ consensus_5505#0 AACAAGTAATAAAGGCGAACTACTGCGACTACTTGAAGACAGAATATAACGAAAAAATGT 180 consensus_5505#1 --------------------------------------TTTTTTTTTTTTTTTTCAATGT 22 * * ***** consensus_5505#0 TACATCAAATATAATTTCAATTTTGAAATATATAGAAGGCCATTCGTTTTATTCCAGAAT 240 consensus_5505#1 TACATCAAATATAATTTCAACTTTGAAATATATAGAAGGCCATTCGTTTTATTCAAGAAT 82 ******************** ********************************* ***** consensus_5505#0 TCTGAAAGAATATATGGCCATATAGAATTCAACTTACACAAACTAAACTCGGAATAAACC 300 consensus_5505#1 TCTGAAAGAATATATGGCCATATAGAATTCAACTTACACAAACTAAACTCGGAATAAACC 142 ************************************************************ consensus_5505#0 GAGCAATATCAGAGTTAGGTATATATAAACGTCACAAGATCAATTGGACACATCATTAGG 360 consensus_5505#1 GAGCAATATCAGAGTTAGGTATATATAAACGTCACAAGATCAATTGGACACATCATTAGG 202 ************************************************************ consensus_5505#0 TTCAGAGTTAGACTTTGAAGTGATTTCTCCAGATGAGCATCCAAAAAGTTCTAGTCTACG 420 consensus_5505#1 TTCAGAGTTAGACTTTGAAGTGATTTCTCCAGATGAGCATCCGAAAAGTTCTAGTCTACG 262 ****************************************** ***************** consensus_5505#0 TTTACGAACTTCCGTAAATTCCGAATCTTCAGATGCAAGGGGACATTTACCATCGGACTC 480 consensus_5505#1 TTTACGAACTTCCGTAAATTCCGAATCTTCAGATGCAAGGGGACATTTACCATCGGACTC 322 ************************************************************ consensus_5505#0 TAACTG-GGTTTTACATCA----------------------------------------- 498 consensus_5505#1 TAACTGAGGTTTTACATCATTAATTAGGGCTTCCTTTTCGTCATTATTTGATTCCACATT 382 ****** ************ consensus_5505#0 ------------------ consensus_5505#1 GTCGGTGTTGAAGGGAGT 400 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||