These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5511#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 484 fasta sequence [TTTTTTTTTTTGTATGTTAACTTATATATTATCTTAATTGATTACATAATAAATGAATGTAACTCTATTTATAAACGTTGAATAGATAACTTTGTTATATTTTTATAAACCTATCATACTAGTCAAGCTCGTCTGTTTCCTGATTCGATCATTATGAACCATGGACTTGAGGAAACCCCATTTCTTTTATTAATAAGTGATCTGTTGCCAAGGTTGCGAATAAACCATATAGATTAAATTCTGAATGAAATAGATATGGTTTAGCACATTTATGCATCACTAATTTTGGCGGGAATAAGAAAGTTGATTCAGTATACAATCCACGTGCGAAATTAAGAAATTCTAATTGATTTCACACATTTATTTGGTAAGTTAATCAACGTGTTCGTCTTAAAACAACATTCAGATGCCACTGATTTATGTGAACATTTACCGTCTCCACTGAAAATGTCTGATTCCCCAACCAATTCAGATTGATCCTTTT] [+] EMBL AI394964 [TTTTTTTTTTTGTATGTTAACTTATATATTATCTTAATTGATTACATAATAAATGAATGTAACTCTATTTATAAACGTTGAATAGATAACTTTGTTATATTTTTATAAACCTATCATACTAGTCAAGCTCGTCTGTTTCCTGATTCGATCATTATGAACCATGGACTTGAGGAAACCCCATTTCTTTTATTAATAAGTGATCTGTTGCCAAGGTTGCGAATAAACCATATAGATTAAATTCTGAATGAAATAGATATGGTTTAGCACATTTATGCATCACTAATTTTGGCGGGAATAAGAAAGTTGATTCAGTATACAATCCACGTGCGAAATTAAGAAATTCTAATTGATTTCACACATTTATTTGGTAAGTTAATC ] [+] EMBL CD077270 [ CTTATATATTATCTTAATTGATTACATAATAAATGAATGTAACTCTATTTATAAACGTTGAATAGATAACTTTGTTATATTTTTATAAACCTATCATACTAGTCAAGCTCGTCTGTTTCCTGATTCGATCATTATGAACCATGGACTTGAGGAAACCCCATTTCTTTTATTAATAAGTGATCTGTTGCCAAGGTTGCGAATAAACCATAGAGATTAAATTCTGAATGAAATAGATATGGTTTAGCACATTTATGCATCACTAATTTTGGCGGTAATAAGAAAGTTGATTCAGTATACAACCCACGTGCGAAATTAAGAAATTCT ATTGAATTCACACATTTATTTGGTAAGTTAATCAACGTGTTCGTCTTAAAACAACATTCAGATGCCACTGATTTATGTGAACATTTACCGTCTCCACTGAAAATGTCTGATTCCCCAACCAATTCAGATTGATCCTTTT] consensusID : consensus_5511#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 425 fasta sequence [TTTTTTTTTTTTTTTTTTTGAAACCTGTATGTTAACTTATATATTATCTTAATTGATTACATAATAAATGAATGTAACTCTATTTATAAACGTTGAATAGATAACTTTGTTATATTTTTATAAACCTATCATACTAGTCAAGCTCGTCTGTTTCCTGATTCGATCATTATGAACCATGGACTTGAGGAAACCCCATTTCTTTTATTAATAAGTGATCTGTTGCCAAGGTTGCGAATAAACCATAGAGATTAAATTCTGAATGAAATAGATATGGTTTAGCACATTTATGCATCACTAATTTTGGCGGTAATCTATTTAATGAAGTAAATGTTGCACGTAAATATTAATTTTATATATGAAGTAAGATATTACAATCAATAAATAATTGTGGTGAATAAGTCCCCTTTAAAAATTGGAACAAAGCA] [+] EMBL AI395777 [TTTTTTTTTTTTTTTTTTTGAAACCTGTATGTTAACTTATATATTATCTTAATTGATTACATAATAAATGAATGTAACTCTATTTATAAACGTTGAATAGATAACTTTGTTATATTTTTATAAACCTATCATACTAGTCAAGCTCGTCTGTTTCCTGATTCGATCATTATGAACCATGGACTTGAGGAAACCCCATTTCTTTTATTAATAAGTGATCTGTTGCCAAGGTTGCGAATAAACCATAGAGATTAAATTCTGAATGAAATAGATATGGTTTAGCACATTTATGCATCACTAATTTTGGCGGTAATCTATTTAATGAAGTAAATGTTGCACGTAAATATTAATTTTATATATGAAGTAAGATATTACAATCAATAAATAATTGTGGTGAATAAGTCCCCTTTAAAAATTGGAACAAAGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5511#0 ---------TTTTTTTTTT------TGTATGTTAACTTATATATTATCTTAATTGATTAC 45 consensus_5511#1 TTTTTTTTTTTTTTTTTTTGAAACCTGTATGTTAACTTATATATTATCTTAATTGATTAC 60 ********** *********************************** consensus_5511#0 ATAATAAATGAATGTAACTCTATTTATAAACGTTGAATAGATAACTTTGTTATATTTTTA 105 consensus_5511#1 ATAATAAATGAATGTAACTCTATTTATAAACGTTGAATAGATAACTTTGTTATATTTTTA 120 ************************************************************ consensus_5511#0 TAAACCTATCATACTAGTCAAGCTCGTCTGTTTCCTGATTCGATCATTATGAACCATGGA 165 consensus_5511#1 TAAACCTATCATACTAGTCAAGCTCGTCTGTTTCCTGATTCGATCATTATGAACCATGGA 180 ************************************************************ consensus_5511#0 CTTGAGGAAACCCCATTTCTTTTATTAATAAGTGATCTGTTGCCAAGGTTGCGAATAAAC 225 consensus_5511#1 CTTGAGGAAACCCCATTTCTTTTATTAATAAGTGATCTGTTGCCAAGGTTGCGAATAAAC 240 ************************************************************ consensus_5511#0 CATATAGATTAAATTCTGAATGAAATAGATATGGTTTAGCACATTTATGCATCACTAATT 285 consensus_5511#1 CATAGAGATTAAATTCTGAATGAAATAGATATGGTTTAGCACATTTATGCATCACTAATT 300 **** ******************************************************* consensus_5511#0 TTGGCGGGAATAAGAAAGTTGATTCAGTATACAATCCACGTGCGAAATTAAG---AAATT 342 consensus_5511#1 TTGGCGGTAATCT---ATTTAATGAAGTAAATGTTGCACGTA-AATATTAATTTTATATA 356 ******* *** * ** ** **** * * ***** * ***** * ** consensus_5511#0 CTAATTGATTTCACACATTTATTTGGTAAGT-TAATCAACGTGTTCGTCTTAAAACAACA 401 consensus_5511#1 TGAAGTAAGATATTACAATCAATAAATAATTGTGGTGAATAAGTCCCCTTTAAAA----A 412 ** * * * *** * * * *** * * * ** ** * ****** * consensus_5511#0 TTCAGATGCCACTGATTTATGTGAACATTTACCGTCTCCACTGAAAATGTCTGATTCCCC 461 consensus_5511#1 TTGGAACAAAGCA----------------------------------------------- 425 ** * * consensus_5511#0 AACCAATTCAGATTGATCCTTTT 484 consensus_5511#1 ----------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||