These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5519#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 696 fasta sequence [TGGGTTTAAGGATGGGTGAACTTCCAATTTTCACTTGTCAAGCCCATGTATTTACAATTAACCCTCAAACAAAAAAATCATGGATTCCGTCAAGCAGTAAAGCAGTCGATGTTAACTTCTTTTATGATTCCAATAAGCACTGTTATCGAATAATTAGTGTTGAAGATTCTTCTGGTTCAAAAAAGGTTATTATTAATAGTACTTTGACGGAAAAAATGACATTCAAGAAGACTTCACAAAAATTTGGACAATGGGCTGATTCTAAAACTGGTGGAGTCCATGGTTTGGGGTTCAGCTCAGAAGCAGACTTAACCATGTTTGTCAATCAATTTAAACAATGTGTAGATTCAATGAAGACTCAAATTCAACCAGAATCAAATAGTCCATCTGGAATACGTGTACCATCAGAATCGGCAAATTTACCGAAAGACAATTTACCAAGCCCGTTACAAAATGGCCAAATTCATCCACCAATATCCAATAGTTGTAGTAGTATTCCAATTAATCAACCCACTATACCAACACTAACGCCTACATGTTTAACGACTAATATTATTACTTCACATCAAAATATTTCACAAAATTTATCAAATCCATTATCTATACAACATGTGAATTCCTCGTCATTGCCTGTTACACTGACAACACATCATTGACACAACTAATGGACAAATGGAAATGTATTCTAATCAATCT] [+] EMBL BF936629 [TGGGTTTAAGGATGGGTGAACTTCCAATTTTCACTTGTCAAGCCCATGTATTTACAATTAACCCTCAAACAAAAAAATCATGGATTCCGTCAAGCAGTAAAGCAGTCGATGTTAACTTCTTTTATGATTCCAATAAGCACTGTTATCGAATAATTAGTGTTGAAGATTCTTCTGGTTCAAAAAAGGTTATTATTAATAGTACTTTGACGGAAAAAATGACATTCAAGAAGACTTCACAAAAATTTGGACAATGGGCTGATTCTAAAACTGGTGGAGTCCATGGTTTGGGGTTCAGCTCAGAAGCAGACTTAACCATGTTTGTCAATCAATTTAAACAATGTGTAGATTCAATGAAGACTCAAATTCAACCAGAATCAAATAGTCCATCTGGAATACGTGTACCATCAGAATCGGCAAATTTACCGAAAGACAATTTACCAAGCCCGTTACAAAATGGCCAAATTCATCCACCAATATCCAATAGTTGTAGTAGTATTCCAATTAATCAACCCACTATACCAACACTAACGCCTACATGTTTAACGACTAATATTATTACTTCACATCAAAATATTTCACAAAATTTATCAAATCCATTATCTATACAACATGTGAATTCCTCGTCATTGCCTGTTACACTGACAACACATCATTGACACAACTAATGGACAAATGGAAATGTATTCTAATCAATCT] [+] EMBL CD169761 [ CAATTTTCACTTGTCAAGCCCATGTATTTACAATTAACCCTCAAACAAAAAAATCATGGATTCCGTCAAGCAGTAAAGCAGTCGATGTTAACTTCTTTTATGATTCCAATAAGCACTGTTATCGAATAATTAGTGTTGAAGATTCTTCTGGTTCAAAAAAGGTTATTATTAATAGTACTTTGACGAAAAAAATGACATTCAAGAAGACTTCACAAAAATTTGGACAATGGGCTGATTCTAAAACTGGTGGAGTCCATGGTTTGGGGTTCAGCTCAGAA ] consensusID : consensus_5519#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 111 fasta sequence [ANANNTACATAGACAGTTTACTGATTAGATTACACCTACCAATGAATCATTGATGGTACACGTATTCCAGATGGACTATTTGATTCTGGTTGAATTTGAGTCTTCATTGAA] [+] EMBL CD128857 [ANANNTACATAGACAGTTTACTGATTAGATTACACCTACCAATGAATCATTGATGGTACACGTATTCCAGATGGACTATTTGATTCTGGTTGAATTTGAGTCTTCATTGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5519#0 TGGGTTTAAGGATGGGTGAACTTCCAATTTTCACTTGTCAAGCCCATGTATTTACAATTA 60 consensus_5519#1 ------------------------------------------------------------ consensus_5519#0 ACCCTCAAACAAAAAAATCATGGATTCCGTCAAGCAGTAAAGCAGTCGATGTTAACTTCT 120 consensus_5519#1 ------------------------------------------------------------ consensus_5519#0 TTTATGATTCCAATAAGCACTGTTATCGAATAATTAGTGTTGAAGATTCTTCTGGTTCAA 180 consensus_5519#1 ------------------------------------------------------------ consensus_5519#0 AAAAGGTTATTATTAATAGTACTTTGACGGAAAAAATGACATTCAAGAAGACTTCACAAA 240 consensus_5519#1 ------------------------------------------------------------ consensus_5519#0 AATTTGGACAATGGGCTGATTCTAAAACTGGTGGAGTCCATGGTTTGGGGTTCAGCTCAG 300 consensus_5519#1 ------------------------------------------------------------ consensus_5519#0 AAGCAGACTTAACCATGTTTGTCAATCAATTTAAACAATGTGTAGATTCAATGAAGACTC 360 consensus_5519#1 ------------------------------------------------------------ consensus_5519#0 AAATTCAACCAGAATCAAATAGTCCATCTGGAATACGTGTACCATCAGAATCGGCAAATT 420 consensus_5519#1 ------------------------------------------------------------ consensus_5519#0 TACCGAAAGACAATTTACCAAGCCCGTTACAAAATGGCCAAATT-CATCCACCAAT-ATC 478 consensus_5519#1 ----------ANANNTACATAGACAGTTT---ACTGATTAGATTACACCTACCAATGAAT 47 * *** ** * *** * ** * *** ** * ****** * consensus_5519#0 CAATAGTTGTAGTAGTATTCCA-ATTAATCAACCCACTATACCAACACTAACGCCTACAT 537 consensus_5519#1 CATTGATGGTACACGTATTCCAGATGGACTATTTGATTCTGGTTGAATTTGAGTCTTCAT 107 ** * * *** ******** ** * * * * * * * * ** *** consensus_5519#0 GTTTAACGACTAATATTATTACTTCACATCAAAATATTTCACAAAATTTATCAAATCCAT 597 consensus_5519#1 --TGAA------------------------------------------------------ 111 * ** consensus_5519#0 TATCTATACAACATGTGAATTCCTCGTCATTGCCTGTTACACTGACAACACATCATTGAC 657 consensus_5519#1 ------------------------------------------------------------ consensus_5519#0 ACAACTAATGGACAAATGGAAATGTATTCTAATCAATCT 696 consensus_5519#1 --------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||