These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5529#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 657 fasta sequence [ATCATATTTTTATTTTTAATTAAATTCAATTGTGAAATACAAAATGTTAAGTCAATGTCAACTTGTTAACAGTTCCTTGAATTTCTTTAAAAGATCTGTAACCCGAGTCTTCTCAAATAATGTTGTACCCGTAGTTGATTCTTCGCCTAAATTATTCACATATTCTTGAACTGTATCAAGTACGGAATTCACTGAAATGGATCGCATTTTCAATAGATGAAGTACACGTTCCAAAATCGTTGGTGCACCGTTTACACAAACATCAAGAATTATAACGTCCAAAACTTGTAATGGCAATAGTCCACCTTCTAAACGTTTGAGCATTAATTCTGTTTCCACTTCTCCCCGAGTATAACCGATCCACTTTTTCTCGTTCCTTCGCATTATTTCGACTTTACTATCCGTTGCTTTAACAATATCTAAGTATTTCAAATGTAATTCAATTAGTCGATCCACTTTTTCATGATCATTCTCAACAAATTTAGCCAAAACGCGAGGTTTAAAAGTTTCCGGAGGTGAATGACGAAGCAAAGCGGAAATAATATTAATCACATGTTCTTCCATTTCAGCTGCAGTTGGACCACTGATAACTTTCACCTTGGTTTTTGAACCAGATGAAGTTGATCGAAGTGCATGTTCACGTGGACAATGCATAAA] [+] EMBL CD073719 [ATCATATTTTTATTTTTAATTAAATTCAATTGTGAAATACAAAATGTTAAGTCAATGTCAACTTGTTAACAGTTCCTTGAATTTCTTTAAAAGATCTGTAACCCGAGTCTTCTCAAATAATGTTGTACCCGTAGTTGATTCTTCGCCTAAATTATTCACATATTCTTGAACTGTATCAAGTACGGAATTCACTGAAATGGATCGCATTTTCAATAGATGAAGTACACGTTCCAAAATCGTTGGTGCACCGTTTACACAAACATCAAGAATTATAACGTCCAAAACTTGTAATGGCAATAGTCCACCTTCTAAACGTTTGAGCATTAATTCTGTTTCCACTTCTCCCCGAGTATAACCGATCCACTTTTTCTCGTTCCTTCGCATTATTTCGACTTTACTATCCGTTGCTTTAACAATATCTAAGTATTTCAAATGTAATTCAATTAGTCGATCCACTTTTTCATGATCATTCTCAACAAATTTAGCCAAAACGCGAGGTTTAAAAGTTTCCGGAGGTGAATGACGAAGCAAAGCGGAAATAATATTAATCACATGTTCTTCCATTTCAGCTGCAGTTGGACCACTGATAACTTTCACCTTGGTTTTTGAACCAGATGAAGTTGATCGAAGTGCATGTTCACGTGGACAATGCATAAA] [-] EMBL CD184268 [ ccaCCCGCGTATAACCGATCCACTTTTTCTCGTTCCTTCGCATTATTTCGACTTTACTATCCGTTGCTTTAACAATATCTAAGTATTTCAAATGTAATTCAATTAGTCGATCCACTTTTTCATGATCATTCTCAACAAATTTAGCCAAAACGCGAGGTTTAAAAGTTTCCGGAGGTGAATGACGAAGCAAAGCGGAAATAATATTAATCACATGTTCTTCC ] consensusID : consensus_5529#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 115 fasta sequence [TTCGGGCGAGTGAGTTTTACAGATCTTTTAAAGAAATTCAAGGAACTGTTAACAAGTTGACATTGACTTAACATTTTGTATTTCACAATCTAATTTAATTAAAATATATATATGA] [+] EMBL AI764949 [TTCGGGCGAGTGAGTTTTACAGATCTTTTAAAGAAATTCAAGGAACTGTTAACAAGTTGACATTGACTTAACATTTTGTATTTCACAATCTAATTTAATTAAAATATATATATGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5529#0 ATCATATTTTTATTTTTAATTAAATTCAATTGTGAAATACAAAATGTTAAGTCAATGTCA 60 consensus_5529#1 ---------TTCGGGCGAGTGAGTTTTACAGATCTTTTAAAGAAATTCAAGGAACTGTTA 51 ** * * * ** * * ** * ** * *** * *** * consensus_5529#0 ACTTGTTAACAGTTCCTTGAATTTCTTTAAAAGATCTGTAACCCGAGTCTTCTCAAATAA 120 consensus_5529#1 ACAAGTTGACATTGACTTAACATTTTGTAT----TTCACAATCTAATTTAATTAAAATAT 107 ** *** *** * *** * ** * ** * ** * * * * ***** consensus_5529#0 TGTTGTACCCGTAGTTGATTCTTCGCCTAAATTATTCACATATTCTTGAACTGTATCAAG 180 consensus_5529#1 ATATATGA---------------------------------------------------- 115 * * consensus_5529#0 TACGGAATTCACTGAAATGGATCGCATTTTCAATAGATGAAGTACACGTTCCAAAATCGT 240 consensus_5529#1 ------------------------------------------------------------ consensus_5529#0 TGGTGCACCGTTTACACAAACATCAAGAATTATAACGTCCAAAACTTGTAATGGCAATAG 300 consensus_5529#1 ------------------------------------------------------------ consensus_5529#0 TCCACCTTCTAAACGTTTGAGCATTAATTCTGTTTCCACTTCTCCCCGAGTATAACCGAT 360 consensus_5529#1 ------------------------------------------------------------ consensus_5529#0 CCACTTTTTCTCGTTCCTTCGCATTATTTCGACTTTACTATCCGTTGCTTTAACAATATC 420 consensus_5529#1 ------------------------------------------------------------ consensus_5529#0 TAAGTATTTCAAATGTAATTCAATTAGTCGATCCACTTTTTCATGATCATTCTCAACAAA 480 consensus_5529#1 ------------------------------------------------------------ consensus_5529#0 TTTAGCCAAAACGCGAGGTTTAAAAGTTTCCGGAGGTGAATGACGAAGCAAAGCGGAAAT 540 consensus_5529#1 ------------------------------------------------------------ consensus_5529#0 AATATTAATCACATGTTCTTCCATTTCAGCTGCAGTTGGACCACTGATAACTTTCACCTT 600 consensus_5529#1 ------------------------------------------------------------ consensus_5529#0 GGTTTTTGAACCAGATGAAGTTGATCGAAGTGCATGTTCACGTGGACAATGCATAAA 657 consensus_5529#1 --------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||