These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_553#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 448 fasta sequence [AATTGAAGAGGGAGATTGATTATGAACACAGTGATCTTGAGTGCTGTTAGAGGTATGAGGGTGGTTAACACTTCCCGGTTTCTCACACCGTGGAAGGGTTCTTCTGGGGTTACCTAAAAAAAATGGATTACAAGTGGTCCTAGTGACCTGAGAGCGTGACGGAAGTGCCCAAGGGACAACTGCATGAGGCCGGTCACACACAACCCTTTTGTGAGTAACTTTCGTGTTAGCTCCGTACTTGTTGAGACCTTACCACCGAAGACGGAAATCCGTGGGATAAGGCGAGGTGTGCATTTTCAGGGTCGACCTTTTCTAACCCCCCCCTCCTTGTGAGAAGGCAGCATCGCTGTTATGCTGGTTATCCGAAGGAAACACCTTACTGCCGTTACACCTCTGTACAGTCAGTAGTACGACTTTGCCCTCGGACCTTCGGTTCGCCGCTTTCAGT] [+] EMBL CD197944 [AATTGAAGAGGGAGATTGATTATGAACACAGTGATCTTGAGTGCTGTTAGAGGTATGAGGGTGGTTAACACTTCCCGGTTTCTCACACCGTGGAAGGGTTCTTCTGGGGTTACCTAAAAAAAATGGATTACAAGTGGTCCTAGTGACCTGAGAGCGTGACGGAAGTGCCCAAGGGACAACTGCATGAGGCCGGTCACACACAACCCTTTTGTGAGTAACTTTCGTGTTAGCTCCGTACTTGTTGAGACCTTACCACCGAAGACGGAAATCCGTGGGATAAGGCGAGGTGTGCATTTTCAGGGTCGACCTTTTCTAACCCCCCCCTCCTTGTGAGAAGGCAGCATCGCTGTTATGCTGGTTATCCGAAGGAAACACCTTACTGCCGTTACACCTCTGTACAGTCAGTAGTACGACTTTGCCCTCGGACCTTCGGTTCGCCGCTTTCAGT] consensusID : consensus_553#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 270 fasta sequence [GTCTAGTGGTTAATCGCTCTGACGCGAGACTGGTAGGTTTTAGGTTGGTGGGATGGTGGATGTGCACTGCCGAGGAGTCCCACAATAAGAGGAAACGGCCGTCCAGTGCTTCCAGGTTTTCCCTGGTGGTCTAACTCACACTTTCAACTAAAAATTAATGCTTTCCAGATTCTCAAAACTCATTCACTAGGTGTACAATTTGTATACTACGTTTTAAATCATACTTTGTATGTCACGGTTAATAATAATAGTGTTAAAATTACTGTATAG] [+] EMBL BG931107 [GTCTAGTGGTTAATCGCTCTGACGCGAGACTGGTAGGTTTTAGGTTGGTGGGATGGTGGATGTGCACTGCCGAGGAGTCCCACAATAAGAGGAAACGGCCGTCCAGTGCTTCCAGGTTTTCCCTGGTGGTCTAACTCACACTTTCAACTAAAAATTAATGCTTTCCAGATTCTCAAAACTCATTCACTAGGTGTACAATTTGTATACTACGTTTTAAATCATACTTTGTATGTCACGGTTAATAATAATAGTGTTAAAATTACTGTATAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_553#0 AATTGAAGAGGGAGATTGATTATGAACACAGTGATCTTGAGTGCTGTTAGAGGTATGAGG 60 consensus_553#1 -------------------------GTCTAGTGGT--TAATCGCTCT----GACGCGAGA 29 **** * * * *** * * *** consensus_553#0 GTGGTTAACACTTCCCGGTTTCTCACACCGTGGAAGGGTTCTTCTGGGGTTACCTAAAA- 119 consensus_553#1 CTGGTAGG---TTTTAGGTTGGTGGGATGGTGGATGTGCACTGCCGAGGAGTCCCACAAT 86 **** ** **** * * ***** * * ** * * ** ** * ** consensus_553#0 -----AAAATGGATTACAAGTGGTCCTAG---TGACCTGAGAGCGTGACGGAAGTGCCCA 171 consensus_553#1 AAGAGGAAACGGCCGTCCAGTGCTTCCAGGTTTTCCCTGGTGGTCTAACTCACACTTTCA 146 *** ** * **** * * ** * **** * * ** * ** consensus_553#0 AGGGACAACTGCATGAGGCCGGTCACACACAACCCTTTTG-TGAGTAACTTTCGTGTTAG 230 consensus_553#1 ACTAAAAATTAATGCTTTCCAGATTCTCAAAACTCATTCACTAGGTGTACAATTTGTATA 206 * * ** * ** * * ** *** * ** * ** *** consensus_553#0 CTCCGTACTTGTTGAGACCTTACCACCGAAGACGGAAATCCGTGGGATAAGGCGAGGTGT 290 consensus_553#1 CTACGTTTTAAATCATACTTTGTATGTCACGGTTAATAATAATAGTGTTAAAATTACTGT 266 ** *** * * * ** ** * * * * * * * * *** consensus_553#0 GCATTTTCAGGGTCGACCTTTTCTAACCCCCCCCTCCTTGTGAGAAGGCAGCATCGCTGT 350 consensus_553#1 ATAG-------------------------------------------------------- 270 * consensus_553#0 TATGCTGGTTATCCGAAGGAAACACCTTACTGCCGTTACACCTCTGTACAGTCAGTAGTA 410 consensus_553#1 ------------------------------------------------------------ consensus_553#0 CGACTTTGCCCTCGGACCTTCGGTTCGCCGCTTTCAGT 448 consensus_553#1 -------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||