cluster # 5530

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Schistosoma mansoni
cluster # 5530 cluster # 5530 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5530#0 length = 435 sequences # 1

consensus_5530#1 length = 429 sequences # 2

consensusID : consensus_5530#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 435
fasta sequence

                              [CCCAAGGGTGGGAAATCAGGGAGTCAAATAACATTTATGCTCTCGATCCTCAACAGGGACAAGTAACTTCTTGGCCACCAAATTGGTATCAATGGTACATTTCTTCTCACATGTTTCCACAAAGGCATCCATCCTATTCACAATTTCCCTATCACCACTACTATTACCCACACCTGAAACAACAACAACAATTCGGTTTTGACCATACAGTTTTTTCACATCGTATGAATCGTTTAGTCACCCCCTTATCTTATGTGATGAATTCTCCACCAAACTATTCGCCATCGGGGCATTTTTGCTGTATGGATCCAAACCATGCACATGTGTACGAAGGCAATTGTACATCCCCTTTGGCTGAAAGTTGTCATTTCGTCTCCTATGACCCACAGACTACAGAAAACCCACTACAAGCAACAGCAGCCAGTGGTCTATGCT]

[+] EMBL CD167879             [CCCAAGGGTGGGAAATCAGGGAGTCAAATAACATTTATGCTCTCGATCCTCAACAGGGACAAGTAACTTCTTGGCCACCAAATTGGTATCAATGGTACATTTCTTCTCACATGTTTCCACAAAGGCATCCATCCTATTCACAATTTCCCTATCACCACTACTATTACCCACACCTGAAACAACAACAACAATTCGGTTTTGACCATACAGTTTTTTCACATCGTATGAATCGTTTAGTCACCCCCTTATCTTATGTGATGAATTCTCCACCAAACTATTCGCCATCGGGGCATTTTTGCTGTATGGATCCAAACCATGCACATGTGTACGAAGGCAATTGTACATCCCCTTTGGCTGAAAGTTGTCATTTCGTCTCCTATGACCCACAGACTACAGAAAACCCACTACAAGCAACAGCAGCCAGTGGTCTATGCT]




>consensus_5530#0
CCCAAGGGTGGGAAATCAGGGAGTCAAATAACATTTATGCTCTCGATCCTCAACAGGGAC
AAGTAACTTCTTGGCCACCAAATTGGTATCAATGGTACATTTCTTCTCACATGTTTCCAC
AAAGGCATCCATCCTATTCACAATTTCCCTATCACCACTACTATTACCCACACCTGAAAC
AACAACAACAATTCGGTTTTGACCATACAGTTTTTTCACATCGTATGAATCGTTTAGTCA
CCCCCTTATCTTATGTGATGAATTCTCCACCAAACTATTCGCCATCGGGGCATTTTTGCT
GTATGGATCCAAACCATGCACATGTGTACGAAGGCAATTGTACATCCCCTTTGGCTGAAA
GTTGTCATTTCGTCTCCTATGACCCACAGACTACAGAAAACCCACTACAAGCAACAGCAG
CCAGTGGTCTATGCT

consensusID : consensus_5530#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 429
fasta sequence

                              [CCTCTTCTCATACTGGAAACGCAGATGGTAATGCCAATCATATGAATTATTGCACAGAGTCAAATAACATTTATGCTCCCGATCCTCAACAGGGACAAGTAACTTCTTGGCCACCAAATTGGTATCAATGGTACATTTCTTCTCACATGTTTCCACAAAGGCATCCATCCTATTCACAATTTCCCTATCACCACTACTATTACCCACACCTGAAACAACAACAACAATTCGGTTTTGACCATACAGTTTTTTCACATCGTATGAATCGTTTAGTCACCCCCTTATCTTATGTGATTCTGCATGGTAATCAGTTCCACAATGAATTCTCCACCAAACTATTCGCCATCGGGGCATTTTTGCTGTATGGATCCAAACCATGCACATGTGTACGAAGGCAATTGTACATCCCCTTTGGCTGAAAGTTGTCAT]

[-] EMBL CD137159             [CCTCTTCTCATACTGGAAACGCAGATGGTAATGCCAATCATATGAATTATTGCACAGAGTCAAATAACATTTATGCTCCCGATCCTCAACAGGGACAAGTAACTTCTTGGCCACCAAATTGGTATCAATGGTACATTTCTTCTCACATGTTTCCACAAAGGCATCCATCCTATTCACAATTTCCCTATCACCACTACTATTACCCACACCTGAAACAACAACAACAATTCGGTTTTGACCATACAGTTTTTTCACATCGTATGAATCGTTTAGTCACCCCCTTATCTTATGTGATTCTGCATGGTAATCAGTTCCACAATGAATTCTCCACCAAACTATTCGCCATCGGGGCATTTTTGCTGTATGGATCCAAACCATGCACATGTGTACGAAGGCAATTGTACATCCCCTTTGGCTGAAAGTTGTCAT]
[-] EMBL CD137100             [CCTCTTCTCATACTGGAAACGCAGATGGTAATGCCAATCATATGAATTATTGCACAGAGTCAAATAACATTTATGCTCCCGATCCTCAACAGGGACAAGTAACTTCTTGGCCACCAAATTGGTATCAATGGTACATTTCTTCTCACATGTTTCCACAAAGGCATCCATCCTATTCACAATTTCCCTATCACCACTACTATTACCCACACCTGAAACAACAACAACAATTCGGTTTTGACCATACAGTTTTTTCACATCGTATGAATCGTTTAGTCACCCCCTTATCTTATGTGATTCTGCATGGTAATCAGTTCCACAATGAATTCTCCACCAAACTATTCGCCATCGGGGCATTTTTGCTGTATGGATCCAAACCATGCACATGTGTACGAAGGCAATTGTACATCCCCTTTGGCTGAAAGTTGTCAT]




>consensus_5530#1
CCTCTTCTCATACTGGAAACGCAGATGGTAATGCCAATCATATGAATTATTGCACAGAGT
CAAATAACATTTATGCTCCCGATCCTCAACAGGGACAAGTAACTTCTTGGCCACCAAATT
GGTATCAATGGTACATTTCTTCTCACATGTTTCCACAAAGGCATCCATCCTATTCACAAT
TTCCCTATCACCACTACTATTACCCACACCTGAAACAACAACAACAATTCGGTTTTGACC
ATACAGTTTTTTCACATCGTATGAATCGTTTAGTCACCCCCTTATCTTATGTGATTCTGC
ATGGTAATCAGTTCCACAATGAATTCTCCACCAAACTATTCGCCATCGGGGCATTTTTGC
TGTATGGATCCAAACCATGCACATGTGTACGAAGGCAATTGTACATCCCCTTTGGCTGAA
AGTTGTCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5530#0      --------------------------------CCCAAGGGTGGGAAAT----CAGGGAGT 24
consensus_5530#1      CCTCTTCTCATACTGGAAACGCAGATGGTAATGCCAATCATATGAATTATTGCACAGAGT 60
                                                       ****   *  *** *    **  ****

consensus_5530#0      CAAATAACATTTATGCTCTCGATCCTCAACAGGGACAAGTAACTTCTTGGCCACCAAATT 84
consensus_5530#1      CAAATAACATTTATGCTCCCGATCCTCAACAGGGACAAGTAACTTCTTGGCCACCAAATT 120
                      ****************** *****************************************

consensus_5530#0      GGTATCAATGGTACATTTCTTCTCACATGTTTCCACAAAGGCATCCATCCTATTCACAAT 144
consensus_5530#1      GGTATCAATGGTACATTTCTTCTCACATGTTTCCACAAAGGCATCCATCCTATTCACAAT 180
                      ************************************************************

consensus_5530#0      TTCCCTATCACCACTACTATTACCCACACCTGAAACAACAACAACAATTCGGTTTTGACC 204
consensus_5530#1      TTCCCTATCACCACTACTATTACCCACACCTGAAACAACAACAACAATTCGGTTTTGACC 240
                      ************************************************************

consensus_5530#0      ATACAGTTTTTTCACATCGTATGAATCGTTTAGTCACCCCCTTATCTTATGTGAT----- 259
consensus_5530#1      ATACAGTTTTTTCACATCGTATGAATCGTTTAGTCACCCCCTTATCTTATGTGATTCTGC 300
                      *******************************************************     

consensus_5530#0      --------------------GAATTCTCCACCAAACTATTCGCCATCGGGGCATTTTTGC 299
consensus_5530#1      ATGGTAATCAGTTCCACAATGAATTCTCCACCAAACTATTCGCCATCGGGGCATTTTTGC 360
                                          ****************************************

consensus_5530#0      TGTATGGATCCAAACCATGCACATGTGTACGAAGGCAATTGTACATCCCCTTTGGCTGAA 359
consensus_5530#1      TGTATGGATCCAAACCATGCACATGTGTACGAAGGCAATTGTACATCCCCTTTGGCTGAA 420
                      ************************************************************

consensus_5530#0      AGTTGTCATTTCGTCTCCTATGACCCACAGACTACAGAAAACCCACTACAAGCAACAGCA 419
consensus_5530#1      AGTTGTCAT--------------------------------------------------- 429
                      *********                                                   

consensus_5530#0      GCCAGTGGTCTATGCT 435
consensus_5530#1      ----------------