These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5533#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 453 fasta sequence [TTGTGAGACTTCAGTCTGTCAGCTGTCCTCCATACACGACTTTTCGCTGTAGTCCGTCTTATGAATTCCGGATGGTGTTGACGATTTTCTCACCTACACCGTAGTGTTGAAGAAGGTTCCATGAGGTTCTCCCATCCACACTATCAATACTTCCTCATAGTCAATGAAGTTGGTGTGTGGTGTCGAATTCAATTCAATTGATTGTTCAACGATGATCTGTAGTGTAGCAGTTCGGTCTGTGCACGACCAGTCCTTATGGAATCCGTCCTGTTGATCTCGAAGCTGTACGTCTACTGAATCTTTCACTCCGATTTAGCAACACTCTGTTGAAAACTTTTCCTGGCACTGACGGTAGTGTGATGCCTCTATAGTTCTCACATTCGCTCGAATCTACTTTCTTTGGTATCTTGATGAGATATCCTTCTTTTCAGTCTGTCACCGGTATTTTTTCTT] [+] EMBL CD196371 [TTGTGAGACTTCAGTCTGTCAGCTGTCCTCCATACACGACTTTTCGCTGTAGTCCGTCTTATGAATTCCGGATGGTGTTGACGATTTTCTCACCTACACCGTAGTGTTGAAGAAGGTTCCATGAGGTTCTCCCATCCACACTATCAATACTTCCTCATAGTCAATGAAGTTGGTGTGTGGTGTCGAATTCAATTCAATTGATTGTTCAACGATGATCTGTAGTGTAGCAGTTCGGTCTGTGCACGACCAGTCCTTATGGAATCCGTCCTGTTGATCTCGAAGCTGTACGTCTACTGAATCTTTCACTCCGATTTAGCAACACTCTGTTGAAAACTTTTCCTGGCACTGACGGTAGTGTGATGCCTCTATAGTTCTCACATTCGCTCGAATCTACTTTCTTTGGTATCTTGATGAGATATCCTTCTTTTCAGTCTGTCACCGGTATTTTTTCTT] [+] EMBL CD196376 [TTGTGAGACTTCAGTCTGTCAGCTGTCCTCCATACACGACTTTTCGCTGTAGTCCGTCTTATGAATTCCGGATGGTGTTGACGATTTTCTCACCTACACCGTAGTGTTGAAGAAGGTTCCATGAGGTTCTCCCATCCACACTATCAATACTTCCTCATAGTCCATGAAGTTGGTGTGTGGTGTCGAATTCAATTCAATTGATTGTTCAACGATGATCTGTAGTGTAGCAGTTCGGTCTGTGCACGACCAGTCCTTATGGAATCCGTCCTGTTGATCTCGAAGCTGTACGTCTACTGAATCTTTCA TCCGATTCAGCAACACTCTGTTGAAAACTTTTCCTGGCACTGACGGTAGTGTGATGCCTCTA ] consensusID : consensus_5533#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 347 fasta sequence [TCCGGTCTGTTGATCTCAAAGTTGGGCATTTACTGAGTCTTTCATCCGATTCAGCAACACTCTGTTGAAAACTTTTACTGGTACTGATAGTAGTGTGATGGCTCTGTAGTTTCCCATATTTGCTCAGATCTCCTTTCTTGGTGATATATCCTTCTTTTCAGTCTTGTCACCACTTGTCCTTCCTCCTAAATCCTGATTAGAACATGGAGCATAATAGGCAGGTTATTCCCTTTGGCCTCAGACTGGTATGTTGTCAGGTCCTGCTGCTTTCTTACTCTTGATTTGTCTGAAGACTGGCCACCCTGATTTCTTCAGATCGTTGGTAGAGTGACAGCTATATGAAGGTC] [-] EMBL CD137052 [TCCGGTCTGTTGATCTCAAAGTTGGGCATTTACTGAGTCTTTCATCCGATTCAGCAACACTCTGTTGAAAACTTTTACTGGTACTGATAGTAGTGTGATGGCTCTGTAGTTTCCCATATTTGCTCAGATCTCCTTTCTTGGTGATATATCCTTCTTTTCAGTCTTGTCACCACTTGTCCTTCCTCCTAAATCCTGATTAGAACATGGAGCATAATAGGCAGGTTATTCCCTTTGGCCTCAGACTGGTATGTTGTCAGGTCCTGCTGCTTTCTTACTCTTGATTTGTCTGAAGACTGGCCACCCTGATTTCTTCAGATCGTTGGTAGAGTGACAGCTATATGAAGGTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5533#0 TTGTGAGACTTCAGTCTGTCAGCTGTCCTCCATACACGACTTTTCGCTGTAGTCCGTCTT 60 consensus_5533#1 ---------TCCGGTCTGT----TGATCTCAAAGTTGGGCATTT-ACTG-AGTCTTTCAT 45 * * ****** ** *** * * * *** *** **** ** * consensus_5533#0 ATGAATT--CCGGATGGTGTTGACGATTTTCTCACCTACACCGTAGTGTTGAAGAAGGTT 118 consensus_5533#1 CCGATTCAGCAACACTCTGTTGAAAACTTTTACTGGTAC-TGATAGTAGTGT-GATGGCT 103 ** * * * ****** * *** * *** **** ** ** ** * consensus_5533#0 CCATGAGGTTCTCCCATCCACACTATCAATACTTCCTCATAGTCAATGAAGTTGGTGTGT 178 consensus_5533#1 CTGT-AGTTTCCCATATTTGCTC---AGATCTCCTTTCTTGGTGATATATCCTTCTTTTC 159 * * ** *** * ** * * ** ** * ** * * * * * consensus_5533#0 GGTGTCGAATTCAATTCAATTGATTGTTCAACGATGATCTGTAGTGTAGCAGTTCGGTCT 238 consensus_5533#1 AGTCTTGTCACCACTTGTCCTTCCTCCTAAATCCTGAT-TAGAACATGG-AGCATAATAG 217 ** * * ** ** * * * ** **** * * * * ** * consensus_5533#0 GTGCACGACCAGTCCTTATGGAATCCGTCCTGTTGATCTCGAAGCTGTACGTCTACTGAA 298 consensus_5533#1 GCA---GGTTATTCCCTTTGGCCTCAGACTGGTATGTTGTCAGGTCCTGCTGCTTTCTTA 274 * * * *** * *** ** * * ** * * * * * ** * consensus_5533#0 TCTTTCACTCCGATTTAGCAACACTCTGTTGAAAACTTTTCCTGGCACTGACGGTAGTGT 358 consensus_5533#1 CTCTTGATTT--GTCTGAAGACTGGCCACCCTGA---TTTCTTCAGATCGTTGGTAGAGT 329 ** * * * * ** * * **** * * * ***** ** consensus_5533#0 GATGCCTCTATAGTTCTCACATTCGCTCGAATCTACTTTCTTTGGTATCTTGATGAGATA 418 consensus_5533#1 GACAGCTATATGAAGGTC------------------------------------------ 347 ** ** *** ** consensus_5533#0 TCCTTCTTTTCAGTCTGTCACCGGTATTTTTTCTT 453 consensus_5533#1 ----------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||