These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5546#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 468 fasta sequence [ATGGCGCGAGTATTGAGATTTTTCACCGCCAGACAGATTCATCTGACAGCTGGTCTTCAAGCTGGAGGATTATTTAGGGCTAGGTTTGTCCACATTGCATAAACTTTTGATTAAAAGACGTCGCCTACCTCCCAGTAACAACGAATGGGGACCATTAACCGATTTGCCTGACTACACTGTCATAGGCTAACCCTCAATTTACAAGCCAAGGGCAAAGACGACGAGCTATTCAGCAATACAAAGTATCTGTAAGTCATTGAATTTGTGTAGATGCAACATCTTATCATGTAGACGAAAATAATCCAATTGATTGGCGAAATGAAAGAAACTCAAGAAAAGTATGTTAAAAATATGGAAATGGAGGAGATCAATACCAAAATATTAAAACAGCAGTGTCTTCGAGAGAAAGGGAATCGAAGTGCATAAATANTTTCGTTGACATTGGCAGTTTATAAATATAACTACAAA] [+] EMBL CD080040 [ATGGCGCGAGTATTGAGATTTTTCACCGCCAGACAGATTCATCTGACAGCTGGTCTTCAAGCTGGAGGATTATTTAGGGCTAGGTTTGTCCACATTGCATAAACTTTTGATTAAAAGACGTCGCCTACCTCCCAGTAACAACGAATGGGGACCATTAACCGATTTGCCTGACTACACTGTCATAGGCTAACCCTCAATTTACAAGCCAAGGGCAAAGACGACGAGCTATTCAGCAATACAAAGTATCTGTAAGTCATTGAATTTGTGTAGATGCAACATCTTATCATGTAGACGAAAATAATCCAATTGATTGGCGAAATGAAAGAAACTCAAGAAAAGTATGTTAAAAATATGGAAATGGAGGAGATCAATACCAAAATATTAAAACAGCAGTGTCTTCGAGAGAAAGGGAATCGAAGTGCATAAATANTTTCGTTGACATTGGCAGTTTATAAATATAACTACAAA] consensusID : consensus_5546#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 390 fasta sequence [GAGTATTGAGATTTTTCACCGCCAGACAGATTCATCTGACAGCTGGTCTTCAAGCTGGAGGATTATTTAGGGGTAGACGTCGCCTACCTCCCAGTAACAACGAATGGGGACCATTAACCGATTTGCCTGACTACACTGTCATAGGAAAGGCTAACCCTCAATTTACAAGCCAAGGGCAAAGACGACGAGCTATTCAGCAATACAAAGTATCTACGAAAATAATCCAATTGATTGGCGAAATGAAAGAAACTCAAGAAAAGTATGTTAAAAATATGGAAATGGAGGAGATCAATACCAAAATATTAAAACAGCAGTGTTTTCGAGAGAAAGGGAATCGAAGTGCATAAATATTTCGTTGACATTGGCAGTTTATAAATATAACTACAAATT] [-] EMBL CD077250 [GAGTATTGAGATTTTTCACCGCCAGACAGATTCATCTGACAGCTGGTCTTCAAGCTGGAGGATTATTTAGGGGTAGACGTCGCCTACCTCCCAGTAACAACGAATGGGGACCATTAACCGATTTGCCTGACTACACTGTCATAGGAAAGGCTAACCCTCAATTTACAAGCCAAGGGCAAAGACGACGAGCTATTCAGCAATACAAAGTATCTACGAAAATAATCCAATTGATTGGCGAAATGAAAGAAACTCAAGAAAAGTATGTTAAAAATATGGAAATGGAGGAGATCAATACCAAAATATTAAAACAGCAGTGTTTTCGAGAGAAAGGGAATCGAAGTGCATAAATATTTCGTTGACATTGGCAGTTTATAAATATAACTACAAATT] [+] EMBL CD190978 [ TTTCACCGCCAGACAGATTCATCTGACAGCTGGTCTTCAAGCTGGAGGATTATTTAGGGCTAGACGTCGCCTACCTCCCAGTAACAACGAATGGGGACCATTAACCGATTTGCCTGACTACACTGTCATAGGAAAGGCTAACC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5546#0 ATGGCGCGAGTATTGAGATTTTTCACCGCCAGACAGATTCATCTGACAGCTGGTCTTCAA 60 consensus_5546#1 -------GAGTATTGAGATTTTTCACCGCCAGACAGATTCATCTGACAGCTGGTCTTCAA 53 ***************************************************** consensus_5546#0 GCTGGAGGATTATTTAGGGCTAGGTTTGTCCACATTGCATAAACTTTTGATTAAAAGACG 120 consensus_5546#1 GCTGGAGGATTATTTAGGGGTAG----------------------------------ACG 79 ******************* *** *** consensus_5546#0 TCGCCTACCTCCCAGTAACAACGAATGGGGACCATTAACCGATTTGCCTGACTACACTGT 180 consensus_5546#1 TCGCCTACCTCCCAGTAACAACGAATGGGGACCATTAACCGATTTGCCTGACTACACTGT 139 ************************************************************ consensus_5546#0 CATAGG-----CTAACCCTCAATTTACAAGCCAAGGGCAAAGACGACGAGCTATTCAGCA 235 consensus_5546#1 CATAGGAAAGGCTAACCCTCAATTTACAAGCCAAGGGCAAAGACGACGAGCTATTCAGCA 199 ****** ************************************************* consensus_5546#0 ATACAAAGTATCTGTAAGTCATTGAATTTGTGTAGATGCAACATCTTATCATGTAGACGA 295 consensus_5546#1 ATACAAAGTATCT-------------------------------------------ACGA 216 ************* **** consensus_5546#0 AAATAATCCAATTGATTGGCGAAATGAAAGAAACTCAAGAAAAGTATGTTAAAAATATGG 355 consensus_5546#1 AAATAATCCAATTGATTGGCGAAATGAAAGAAACTCAAGAAAAGTATGTTAAAAATATGG 276 ************************************************************ consensus_5546#0 AAATGGAGGAGATCAATACCAAAATATTAAAACAGCAGTGTCTTCGAGAGAAAGGGAATC 415 consensus_5546#1 AAATGGAGGAGATCAATACCAAAATATTAAAACAGCAGTGTTTTCGAGAGAAAGGGAATC 336 ***************************************** ****************** consensus_5546#0 GAAGTGCATAAATANTTTCGTTGACATTGGCAGTTTATAAATATAACTACAAA-- 468 consensus_5546#1 GAAGTGCATAAATATTT-CGTTGACATTGGCAGTTTATAAATATAACTACAAATT 390 ************** ** *********************************** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||