These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5566#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 376 fasta sequence [CAAATGCACCAAGTTTTTGACCAACACGAATATTTACTGCTGTAAACAATCCAAGAGGAACCATATATATTATTGACTGAATTTGAAACACGATTGCCTGAGCTCCCAGCGTTACACTTCCAAGAGTGCCGGCCATTATTGTCATAATTCCGAAACACCATTCTTCTAGTCCCACCATTAAAACACCGGGAATTCCCAATTTGAAAAATATACCCCAATTACTGAATGCAGAATTTAAATTGAATCCTGGGAACAGGATAGACTACTAATAACGGGTTTTAGAATAATATAAGGTGATACTGATACAGAGATTGTGAATGAAACTATAAACTNTGTAGTTCACTGACATACTAAATAAGTGTNTTATTCTTCAGTA] [+] EMBL CD182225 [CAAATGCACCAAGTTTTTGACCAACACGAATATTTACTGCTGTAAACAATCCAAGAGGAACCATATATATTATTGACTGAATTTGAAACACGATTGCCTGAGCTCCCAGCGTTACACTTCCAAGAGTGCCGGCCATTATTGTCATAATTCCGAAACACCATTCTTCTAGTCCCACCATTAAAACACCGGGAATTCCCAATTTGAAAAATATACCCCAATTACTGAATGCAGAATTTAAATTGAATCCTGGGAACAGGATAGACTACTAATAACGGGTTTTAGAATAATATAAGGTGATACTGATACAGAGATTGTGAATGAAACTATAAACTNTGTAGTTCACTGACATACTAAATAAGTGTNTTATTCTTCAGTA] consensusID : consensus_5566#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 371 fasta sequence [AGAACTAGCATGNCTTTTAGTATAAATCTTAATAGCGTCAAATTGTTTTTACTTTTAACTGTAACCAGATTTTTAGTGTGTAATACTCCTTCGTCACTTACTTAAATGATGTACAACCACATAAATGAAAATTAAAACGATCTCAGTGGACTAATAATGACATTGTATAAAGTATACTTTGGTTATTGAAAAGGATGACTTTATCACTTACCATTCCATGTTTCCTTATAAACTTTGGAAGCTAATATATATCCCAATTCGCAAAGAAACATGCAACCAAACGATAAGGAAAGGCAGACAGCTGAAGCGCTAGAACATANAATAAGTCTAATTATTATCACTTACGCCAATATTAATCGTTTTAAATAATG] [+] EMBL CD201602 [AGAACTAGCATGNCTTTTAGTATAAATCTTAATAGCGTCAAATTGTTTTTACTTTTAACTGTAACCAGATTTTTAGTGTGTAATACTCCTTCGTCACTTACTTAAATGATGTACAACCACATAAATGAAAATTAAAACGATCTCAGTGGACTAATAATGACATTGTATAAAGTATACTTTGGTTATTGAAAAGGATGACTTTATCACTTACCATTCCATGTTTCCTTATAAACTTTGGAAGCTAATATATATCCCAATTCGCAAAGAAACATGCAACCAAACGATAAGGAAAGGCAGACAGCTGAAGCGCTAGAACATANAATAAGTCTAATTATTATCACTTACGCCAATATTAATCGTTTTAAATAATG] consensusID : consensus_5566#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 343 fasta sequence [ATATATTATTGACTGAATTTGAAACACGATTGCCTGAGCTCCCAGCGTTACACTTCCAAGAGTGCCGGCCATTATTGTCATAATTTCAAAACACCATTCTTCTAGTCCCACCATCAAAACACCGGGAATTCCCAATTTGAAAAATATACCCCAATTACTGAATGCAGAATTTAAATTGAATCCATTCCATGTTTCCTTATAAACTTTGGAAGCTAATATATATCCCAATTCGCAAAGAAACATGCAACCAAACGATAAGGAAAGGCAGACAGCTGAAGCGCGCAGTCCATAGTTTAATCGAACAACAAAATAATACTGTGCTAAAATATTAAAAACTGTCCCT] [+] EMBL CD154972 [ATATATTATTGACTGAATTTGAAACACGATTGCCTGAGCTCCCAGCGTTACACTTCCAAGAGTGCCGGCCATTATTGTCATAATTTCAAAACACCATTCTTCTAGTCCCACCATCAAAACACCGGGAATTCCCAATTTGAAAAATATACCCCAATTACTGAATGCAGAATTTAAATTGAATCCATTCCATGTTTCCTTATAAACTTTGGAAGCTAATATATATCCCAATTCGCAAAGAAACATGCAACCAAACGATAAGGAAAGGCAGACAGCTGAAGCGCGCAGTCCATAGTTTAATCGAACAACAAAATAATACTGTGCTAAAATATTAAAAACTGTCCCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5566#0 CAAATGCACCAAGTTTTTGACCAACACGAATATTTACTGCTGTAAACAATCCAAGAG--G 58 consensus_5566#2 ------------------------------------------------------------ consensus_5566#1 --------------------AGAACTAGCATGNCTTTTAGTATAAATCTTAATAGCGTCA 40 consensus_5566#0 AACCATATATATTATTGACTGAATTTGAAACACGATTGCCTGAGCTCCCAGCGTTACACT 118 consensus_5566#2 ------ATATATTATTGACTGAATTTGAAACACGATTGCCTGAGCTCCCAGCGTTACACT 54 consensus_5566#1 AATTGTTTTTACTTTTAACTGTAACCAGATTTTTAGTGTGTAATACTCCTTCGT--CACT 98 * ** * ** **** * * * ** * * ** *** **** consensus_5566#0 TCCAAGAGTGCCGGCCATTATTGTCATAATTCCGAAACACCATTCTTCTAGTCCCACCAT 178 consensus_5566#2 TCCAAGAGTGCCGGCCATTATTGTCATAATTTCAAAACACCATTCTTCTAGTCCCACCAT 114 consensus_5566#1 TACTTAAATGATGTACA--ACCA-CATAAATGAAAATTAAAACGATCTCAGTGGACTAAT 155 * * * ** * ** * ***** * ** * * * *** ** consensus_5566#0 TAAAACACCGGGAATTCCCAATTTGAAAAATATACCCCAATTACTGAATGCAGAATTTAA 238 consensus_5566#2 CAAAACACCGGGAATTCCCAATTTGAAAAATATACCCCAATTACTGAATGCAGAATTTAA 174 consensus_5566#1 AATGACATTG-------------TATAAAGTATACTTTGGTTATTGAAAAGGATGACTTT 202 * *** * * *** ***** *** **** * consensus_5566#0 ATTGAAT-CCTGGGAACAGG-----ATAGACTACTAATAACGGGTTTTAGAATAAT--AT 290 consensus_5566#2 ATTGAAT-CCATTCCATGTTTCCTTATAAACTTTGGAAGCTAATATATATCCCAATTCGC 233 consensus_5566#1 ATCACTTACCATTCCATGTTTCCTTATAAACTTTGGAAGCTAATATATATCCCAATTCGC 262 ** * ** * *** *** * * ** *** consensus_5566#0 AAGGTGATACTGATACAGA-GATTGTGAATG--AAACTA-TAAACTNTGTAGTTCAC-TG 345 consensus_5566#2 AAAGAAACATGCAACCAAACGATAAGGAAAGGCAGACAGCTGAAGCGCGCAGTCCAT-AG 292 consensus_5566#1 AAAGAAACATGCAACCAAACGATAAGGAAAGGCAGACAGCTGAAGCGC-TAGAACATANA 321 ** * * * * ** * *** *** * * ** * ** ** ** consensus_5566#0 ACATACTAAATAAGTGTNTTATTCTTCAGTA-------------------- 376 consensus_5566#2 TTTAATCGAACAACAAAATAATACTGTGCTAAAATATTAAAAACTGTCCCT 343 consensus_5566#1 ATAAGTCTAATTATTATCACTTACGCCAATATTAATCGTTTTAAATAATG- 371 ** * * * ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||