These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5576#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 545 fasta sequence [TTACGCAATTACCATCACGCATTGAATTAGTCTTTGCCCGTAGAAAGTCTACATATGAGAATGGAGATGATGACGTGTTTAGTATTACGGGTGGTAAGGATCAGTTGATTGATGTCGTAGGGGAATCACTACTTGAAGTTGCTGCTAGTGAAATCGGTTCCGTAGATACTGGCTCATCTGTGAGAATGGTGGATGCTTACGATAAAGTTGATCGGTCAAATTATTCCAGTCCAGTATCACCTGCTACGGCTCATAAACGTGTCACTGAATGGATTCGAAAATCTCAAGGAGATTTAAGCGCGAATATTCACTATCCATCTTCACCTGAATCTTCTGTAACTATGCAAACTAATAATAAATCAGAAAGATTTAGTTGTGATTTAAAAGTAAGTACTTATTTACAGTACAATTACTGAAATAATGTTTGATATTCTAAAGAGCAAATTGTCATTAGAAGAAAATATGCATTTCGTCATAGCTGTATAGGTTTATTAGCTGTTATGGCTATCTGGTCAAACTTTAGGATCAGCTATTTTCTAACTGCA] [-] EMBL CD068192 [TTACGCAATTACCATCACGCATTGAATTAGTCTTTGCCCGTAGAAAGTCTACATATGAGAATGGAGATGATGACGTGTTTAGTATTACGGGTGGTAAGGATCAGTTGATTGATGTCGTAGGGGAATCACTACTTGAAGTTGCTGCTAGTGAAATCGGTTCCGTAGATACTGGCTCATCTGTGAGAATGGTGGATGCTTACGATAAAGTTGATCGGTCAAATTATTCCAGTCCAGTATCACCTGCTACGGCTCATAAACGTGTCACTGAATGGATTCGAAAATCTCAAGGAGATTTAAGCGCGAATATTCACTATCCATCTTCACCTGAATCTTCTGTAACTATGCAAACTAATAATAAATCAGAAAGATTTAGTTGTGAT ] [+] EMBL CD063130 [ GATGACGTGTTTAGTATTACGGGTGGTAAGGATCAGTTGATTGATGTCGTAGGGGAATCACTACTTGAAGTTGCTGCTAGTGAAACCGGTTCCGTAGATACTGGCTCATCTGTGAGAATGGTGGATGCTTACGATAAAGTTGATCGGTCAAATTATTCCAGTCCAGTATCACCTGCTACGGCTCATAAACGTGTCACTGAATGGATTCGAAAATCTCAAGGAGATTTAAGCGCGAATATTCACTATCCATCTTCACCTGAATCTTCTGTAACTATGCAAACTAATAATAAATCAGAAAGATTTAGTTGTGATTTAAAAGTAAGTACTTATTTACAGTACAATTACTGAAATAATGTTTGATATTCTAAAGAGCAAATTGTCATTAGAAGAAAATATGCATTTCGTCATAGCTGTATAGGTTTATTAGCTGTTATGGCTATCTGGTCAAACTTTAGGATCAGCTATTTTCTAACTGCA] consensusID : consensus_5576#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 455 fasta sequence [CCCGATTCCAGTGTCGACTGCTACGGCTCATAAACGTGTCACTGAATGGATTCGAAAATCTCAAGGAGATTTAAGCGCGAATATTCACTATCCATCTTCACCTGAATCTTCTGTAACTATGCAAACTAATAATAAATCAGAAAGATTTAGTTGTGATTTAAAACATGCACAATCGTACAAAATTCACCCCCTCCATAACTATATAAATCCGAATTACACTAGTAAATTGCAACAACAGTATCTAGTAAATACAATGAAAAACGATCGTAAATATTCATTACCAAGTACAGTACAGCCGTCAGAAACACAAATCCATTCTAGGACTTTAGGGCGTTTGCCAATATCAAGATGTAGTAAAGTGTGTATAGGAAAACAATCATCTACTGAACGACACAATCATCGCCGTTGTCAAACTCTACCACATTATCATCATAATCGACTAAATCGTATTGATC] [+] EMBL CD069256 [CCCGATTCCAGTGTCGACTGCTACGGCTCATAAACGTGTCACTGAATGGATTCGAAAATCTCAAGGAGATTTAAGCGCGAATATTCACTATCCATCTTCACCTGAATCTTCTGTAACTATGCAAACTAATAATAAATCAGAAAGATTTAGTTGTGATTTAAAACATGCACAATCGTACAAAATTCACCCCCTCCATAACTATATAAATCCGAATTACACTAGTAAATTGCAACAACAGTATCTAGTAAATACAATGAAAAACGATCGTAAATATTCATTACCAAGTACAGTACAGCCGTCAGAAACACAAATCCATTCTAGGACTTTAGGGCGTTTGCCAATATCAAGATGTAGTAAAGTGTGTATAGGAAAACAATCATCTACTGAACGACACAATCATCGCCGTTGTCAAACTCTACCACATTATCATCATAATCGACTAAATCGTATTGATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5576#0 TTACGCAATTACCATCACGCATTGAATTAGTCTTTGCCCGTAGAAAGTCTACATATGAGA 60 consensus_5576#1 ------------------------------------------------------------ consensus_5576#0 ATGGAGATGATGACGTGTTTAGTATTACGGGTGGTAAGGATCAGTTGATTGATGTCGTAG 120 consensus_5576#1 ------------------------------------------------------------ consensus_5576#0 GGGAATCACTACTTGAAGTTGCTGCTAGTGAAATCGGTTCCGTAGATACTGGCTCATCTG 180 consensus_5576#1 ------------------------------------------------------------ consensus_5576#0 TGAGAATGGTGGATGCTTACGATAAAGTTGATCGGTCAAATTATTCCAGTCCAGTATCAC 240 consensus_5576#1 -------------------------------------------CCCGATTCCAGTGTCGA 17 * * ****** ** consensus_5576#0 CTGCTACGGCTCATAAACGTGTCACTGAATGGATTCGAAAATCTCAAGGAGATTTAAGCG 300 consensus_5576#1 CTGCTACGGCTCATAAACGTGTCACTGAATGGATTCGAAAATCTCAAGGAGATTTAAGCG 77 ************************************************************ consensus_5576#0 CGAATATTCACTATCCATCTTCACCTGAATCTTCTGTAACTATGCAAACTAATAATAAAT 360 consensus_5576#1 CGAATATTCACTATCCATCTTCACCTGAATCTTCTGTAACTATGCAAACTAATAATAAAT 137 ************************************************************ consensus_5576#0 CAGAAAGATTTAGTTGTGATTTAAAA-GTAAGTACTTATTTACAGTACAATTACTGAAAT 419 consensus_5576#1 CAGAAAGATTTAGTTGTGATTTAAAACATGCACAATCGTACAAAATTCACCCCCTCCATA 197 ************************** * * * * * * * ** ** * consensus_5576#0 AATGTTTGAT----ATTCTAAAGAGCAAATTGTCATTAGAAGA----AAATATGCATTTC 471 consensus_5576#1 ACTATATAAATCCGAATTACACTAGTAAATTGCAACAACAGTATCTAGTAAATACAATGA 257 * * * * * * * * ** ****** * * * * * ** ** * consensus_5576#0 GTCATAGCTGTATAGGTTTATTAGCTGTTATGGCTATCTGGTCAAACTTTAGGATCAGCT 531 consensus_5576#1 AAAACGATCGTAAATATTCATTACCAAGTACAGTACAGCCGTCAGAAACACAAATC---C 314 * *** * ** **** * ** * **** * *** consensus_5576#0 ATTTTCTAACTGCA---------------------------------------------- 545 consensus_5576#1 ATTCTAGGACTTTAGGGCGTTTGCCAATATCAAGATGTAGTAAAGTGTGTATAGGAAAAC 374 *** * *** * consensus_5576#0 ------------------------------------------------------------ consensus_5576#1 AATCATCTACTGAACGACACAATCATCGCCGTTGTCAAACTCTACCACATTATCATCATA 434 consensus_5576#0 --------------------- consensus_5576#1 ATCGACTAAATCGTATTGATC 455 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||