These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5589#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 445 fasta sequence [ACCCGGTACCCTTTTGTTTGCTGTTGTCAGGTATCTTCTAATTTTTGTCTTTCTGTCGATGATAGGTCAATAAGAGTAGCTTCTTTAGCATGTAAGGAGAGTAATTTAGTTAGCGCTTCGGATGTTTTTCCCTTTGCAATATGCTCTAACCAACGACCTAATGAAACAAAGACTAGTAACATTGGTGATGTTTCAAATACAGTACGTGGACTATGTTGCCAACGATTCAATATTGCAATTAATAAAATAACGACAGAATATAAATATGCAATCGTTGTAGCTATTACAATTAAAACATCCATATTTGCTATACCATGTTATAATGATTTGTATGCATGAATATAAAAATAGCGACCACCGAATATCTGTATTGGTGTAGCTAATAAAAACATTAACATATTTTCAACTGATAATCCAGGTATTATCATAGGTGTAGTAAAATAGT] [+] EMBL CD168864 [ACCCGGTACCCTTTTGTTTGCTGTTGTCAGGTATCTTCTAATTTTTGTCTTTCTGTCGATGATAGGTCAATAAGAGTAGCTTCTTTAGCATGTAAGGAGAGTAATTTAGTTAGCGCTTCGGATGTTTTTCCCTTTGCAATATGCTCTAACCAACGACCTAATGAAACAAAGACTAGTAACATTGGTGATG ] [+] EMBL CD063194 [ GTAATTTAGTTAGCGCTTCGGATGTTTTTCCCTTTGCAATATGCTCTAACCAACGACCTAATGAAACAAAGACTAGTAACATTGGCGATGTTTCAAATACAGTACGTGGACTATGTTGCCAACGATTCAATATTGCAATTAATAAAATAACGACAGAATATAAATATGCAATCGTTGTAGCTATTACAATTAAAACATCCATATTTGCTATACCATGTTATAATGATTTGTATGCATGAATATAAAAATAGCGACCACCGAATATCTGTATTGGTGTAGCTAATAAAAACATTAACATATTTTCAACTGATAATCCAGGTATTATCATAGGTGTAGTAAAATAGT] consensusID : consensus_5589#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 202 fasta sequence [AAGATTTTGATGATATCGTTTTGATGAACCAATTCAACTGGGATACGTTTTTCAATTCCACTAGTAAATAAATTTGTCGGTAAATGTTTTGTTTGCTGTTGTAAGGTATCTTCTAATTTTTGTCTTTCTGTCGATGATAGGTCAATAAGAGTAGCTTCTTTAGCATGTAAGGAGAGTAATTTAGTTAGCGCTTCGGATGTTT] [+] EMBL CD167401 [AAGATTTTGATGATATCGTTTTGATGAACCAATTCAACTGGGATACGTTTTTCAATTCCACTAGTAAATAAATTTGTCGGTAAATGTTTTGTTTGCTGTTGTAAGGTATCTTCTAATTTTTGTCTTTCTGTCGATGATAGGTCAATAAGAGTAGCTTCTTTAGCATGTAAGGAGAGTAATTTAGTTAGCGCTTCGGATGTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5589#0 ------------------------------------------------------------ consensus_5589#1 AAGATTTTGATGATATCGTTTTGATGAACCAATTCAACTGGGATACGTTTTTCAATTCCA 60 consensus_5589#0 ---------------ACCCGGTACCCTTTTGTTTGCTGTTGTCAGGTATCTTCTAATTTT 45 consensus_5589#1 CTAGTAAATAAATTTGTCGGTAAATGTTTTGTTTGCTGTTGTAAGGTATCTTCTAATTTT 120 * * * **************** ***************** consensus_5589#0 TGTCTTTCTGTCGATGATAGGTCAATAAGAGTAGCTTCTTTAGCATGTAAGGAGAGTAAT 105 consensus_5589#1 TGTCTTTCTGTCGATGATAGGTCAATAAGAGTAGCTTCTTTAGCATGTAAGGAGAGTAAT 180 ************************************************************ consensus_5589#0 TTAGTTAGCGCTTCGGATGTTTTTCCCTTTGCAATATGCTCTAACCAACGACCTAATGAA 165 consensus_5589#1 TTAGTTAGCGCTTCGGATGTTT-------------------------------------- 202 ********************** consensus_5589#0 ACAAAGACTAGTAACATTGGTGATGTTTCAAATACAGTACGTGGACTATGTTGCCAACGA 225 consensus_5589#1 ------------------------------------------------------------ consensus_5589#0 TTCAATATTGCAATTAATAAAATAACGACAGAATATAAATATGCAATCGTTGTAGCTATT 285 consensus_5589#1 ------------------------------------------------------------ consensus_5589#0 ACAATTAAAACATCCATATTTGCTATACCATGTTATAATGATTTGTATGCATGAATATAA 345 consensus_5589#1 ------------------------------------------------------------ consensus_5589#0 AAATAGCGACCACCGAATATCTGTATTGGTGTAGCTAATAAAAACATTAACATATTTTCA 405 consensus_5589#1 ------------------------------------------------------------ consensus_5589#0 ACTGATAATCCAGGTATTATCATAGGTGTAGTAAAATAGT 445 consensus_5589#1 ---------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||