These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_559#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 469 fasta sequence [GGGTCCGCCAACTAGGACGGAGTATCGTGTTATTGTTGAGAATCTCTCGTCGCGTGTGAGCTGGCAGTTACCGCTCGTTGACGTTCGGTCGTTTCGGGTGGCGTAGGACGCGTAGGATTGGTCGTTTTCCATGCCATGGTCAGTCGCCCAGGGTTGTTTCTGGTCGCGCCGTTCAACGGTCGTCCGGCCGAGCATGTGGTAACGTGGTCTCGTACTGTGGTCAGATCAAAACGCGAGGTAAATTGCTCGCGCGTTTTTAAGTACTAGGCTAGCTTAACCCAAATTAGTAGTATATATTAGCTTATTATACAGGGCACGGTTTTTCAGTTGTTTATTCTTTTTTACAGGATCTCAAAGATTTGATGCGTAAGGCTGGAGAAGTTACTTATGCGGACGCACACAAGTCAGCTAAGAACGACGGGTAAGTTGTGCAGTTTTCCGTAACTTCCATTCTAGCATTGTTGAGTTT] [+] EMBL CD129166 [GGGTCCGCCAACTAGGACGGAGTATCGTGTTATTGTTGAGAATCTCTCGTCGCGTGTGAGCTGGCAGTTACCGCTCGTTGACGTTCGGTCGTTTCGGGTGGCGTAGGACGCGTAGGATTGGTCGTTTTCCATGCCATGGTCAGTCGCCCAGGGTTGTTTCTGGTCGCGCCGTTCAACGGTCGTCCGGCCGAGCATGTGGTAACGTGGTCTCGTACTGTGGTCAGATCAAAACGCGAGGTAAATTGCTCGCGCGTTTTTAAGTACTAGGCTAGCTTAACCCAAATTAGTAGTATATATTAGCTTATTATACAGGGCACGGTTTTTCAGTTGTTTATTCTTTTTTACAGGATCTCAAAGATTTGATGCGTAAGGCTGGAGAAGTTACTTATGCGGACGCACACAAGTCAGCTAAGAACGACGGGTAAGTTGTGCAGTTTTCCGTAACTTCCATTCTAGCATTGTTGAGTTT] consensusID : consensus_559#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 347 fasta sequence [CGTCCCATTACATCTTCATATCCTGTGTTGTCCAATTCGACTTTAGCGTTTTGACCTCCCATCAAGATGGTCAGTTCATTTTTTAAGTACATCATTACGATCGATTGCAGTCTCCTGTCAAACTGATCTTTATCATCGTCATTGCTATGATTGGCGGGCGCATAACATTGGATAACATTCATTGTGATCCCCTCCTTCTTTGTTTTGAATGATGCTTTGATTATTTTGGATCAGTCAGATTCTCATCCTAGAAGTGCATTTCGTGCTTCTTTGAACAGCATTAGAGCAACAATCTTCGTGTGTGGAGTATTTTCGTCTTCGTGACCAGAGTACAGCAGCAACTCTCC] [+] EMBL CD140964 [CGTCCCATTACATCTTCATATCCTGTGTTGTCCAATTCGACTTTAGCGTTTTGACCTCCCATCAAGATGGTCAGTTCATTTTTTAAGTACATCATTACGATCGATTGCAGTCTCCTGTCAAACTGATCTTTATCATCGTCATTGCTATGATTGGCGGGCGCATAACATTGGATAACATTCATTGTGATCCCCTCCTTCTTTGTTTTGAATGATGCTTTGATTATTTTGGATCAGTCAGATTCTCATCCTAGAAGTGCATTTCGTGCTTCTTTGAACAGCATTAGAGCAACAATCTTCGTGTGTGGAGTATTTTCGTCTTCGTGACCAGAGTACAGCAGCAACTCTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_559#0 GGGTCCGCCAACTAGGACGGAGTATCGTGTTATTGT-TGAGAATCTCTCGTCGCGTGTGA 59 consensus_559#1 -------------------------CGTCCCATTACATCTTCATATCCTGTGTTGTCCAA 35 *** *** * ** ** ** ** * consensus_559#0 GCTGGCAGTTACCGCTCGTTGACGTTCGGTCGTTTCGGGTGGCGTAGGACGCGTAGGATT 119 consensus_559#1 TTCGACT-TTAGCGTT--TTGACCTCCCATCAAGATGGTCAGTTCATTTTTTAAGTACAT 92 * * *** ** * ***** * * ** ** * * * consensus_559#0 GGTCGTTTTCCATGCCATGGTCAGTCGCCCAGGGTTGTTTCTGGTCGCGCCGTT-CAACG 178 consensus_559#1 CATTACGATCGAT--TGCAGTCTCCTGTC-AAACTGATCTTTATCATCGTCATTGCTATG 149 * ** ** *** * * * * * * * ** * ** * * * consensus_559#0 GTCGTCCGGCCGAGCATGTGGTAACGTGGTCTCGTACTGTGGTCAGATCAAAACGCGAGG 238 consensus_559#1 ATTGGCGGGC---GCATAACATTGGATAACATT-CATTGTGATCCCCTCCTTCTTTGTTT 205 * * * *** **** * * * * **** ** ** * consensus_559#0 TAAATTGCTCGCGCGTTTTTAAGTACTAGGCTAGCTTAACCCAAATTAGTAGTATATATT 298 consensus_559#1 TGAATGATGCTTTGATTATTTTGGATCAGTCAGATT---CTCATCCTAGAAGTGCATTTC 262 * *** * ** ** * * ** * * * ** *** *** ** * consensus_559#0 AGCTTATTATACAGGGCACGGTTTTTCAGTTGTTTATTCTTTTTTACAGGATCTCAAAGA 358 consensus_559#1 GTGCTTCTTTGAACAGCA------TTAGAGCAACAATCTTCGTGTGTGGAGTATTTTCGT 316 * * * * *** ** ** * * * * * * * consensus_559#0 TTTGATGCGTAAGGCTGGAGAAGTTACTTATGCGGACGCACACAAGTCAGCTAAGAACGA 418 consensus_559#1 CTTCGTGACCAGAG-TACAGCAGCAACTCTCC---------------------------- 347 ** ** * * * ** ** *** consensus_559#0 CGGGTAAGTTGTGCAGTTTTCCGTAACTTCCATTCTAGCATTGTTGAGTTT 469 consensus_559#1 --------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||