These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5594#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 392 fasta sequence [CTTTCGACGGTTCAAGGTCGGATGCCTGGTGTAGTTTAAGAGGTTATTTATTTCATCTCTTGACAAACTGGTTGGTACCTCAATTTACAGTCACTCATTACACACTGCACAATGGATGAGGAAGAACTTTCTTTCATACCCCACAGCAAATCTTACGTGTATGTTTCGGTGGAAGCCCCCAATAAAACTGTTTGACTGCTCGTCTGAATACCTCCAAAATTGTCCTGTTGACTACAGTCTTCTGGAAAACCCCTTTAACTCCAAAGCAGAAGTGTATGATCCGAAAAAGGAAGCAAAATTATGGCAAGGATTGGGTATATTAACAACTAATACTAGTGAGATCGATAGTGAAAAGCCGGCGAGTGAGAACCCTTATTACTTAACATCAGTAC] [+] EMBL CD098135 [CTTTCGACGGTTCAAGGTCGGATGCCTGGTGTAGTTTAAGAGGTTATTTATTTCATCTCTTGACAAACTGGTTGGTACCTCAATTTACAGTCACTCATTACACACTGCACAATGGATGAGGAAGAACTTTCTTTCATACCCCACAGCAAATCTTACGTGTATGTTTCGGTGGAAGCCCCCAATAAAACTGTTTGACTGCTCGTCTGAATACCTCCAAAATTGTCCTGTTGACTACAGTCTTCTGGAAAACCCCTTTAACTCCAAAGCAGAAGTGTATGATCCGAAAAAGGAAGCAAAATTATGGCAAGGATTGGGTATATTAACAACTAATACTAGTGAGATCGATAGTGAAAAGCCGGCGAGTGAGAACCCTTATTACTTAACATCAGTAC] consensusID : consensus_5594#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 383 fasta sequence [CTTTCGACGGTTCAAGGTCGGATGCCTGGTGTAGTTTAAGAGGTTATTTATTTCATCTCTTGACAAACTGGTTGGTACCTCAATTTACAGTCACTCATTACACACTGCACAATGGATGAGGAAGAACTTTATTTCATACCCCACAGCAAATCTTACGTGTGGAAGCCCCCAATAAAACTGTTTGACTGCTCGTCTGAATACCTCCAAAATTGTCCTGTTGACTACAGTCTTCTGGAAAACCCCTTTAACTCCAAACCAGAAGTGTATGATCCGAAAAAGGAAGCAAAATTATGGCAAGGATTGGGTATATTAACAACTAAATACTAGTGAGATCGATAGTGAAAAGCCGCCGAGTGAGAACCCTTATTACTTAACATCAGTAC] [+] EMBL CD098099 [CTTTCGACGGTTCAAGGTCGGATGCCTGGTGTAGTTTAAGAGGTTATTTATTTCATCTCTTGACAAACTGGTTGGTACCTCAATTTACAGTCACTCATTACACACTGCACAATGGATGAGGAAGAACTTTATTTCATACCCCACAGCAAATCTTACGTGTGGAAGCCCCCAATAAAACTGTTTGACTGCTCGTCTGAATACCTCCAAAATTGTCCTGTTGACTACAGTCTTCTGGAAAACCCCTTTAACTCCAAACCAGAAGTGTATGATCCGAAAAAGGAAGCAAAATTATGGCAAGGATTGGGTATATTAACAACTAAATACTAGTGAGATCGATAGTGAAAAGCCGCCGAGTGAGAACCCTTATTACTTAACATCAGTAC] [+] EMBL CD131973 [ AGAGGTTATTTATTTCATCTCTTGACAAACTGGTTGGTACCTCAATTTACAGTCACTCATTACACACTGCACAATGGATGAGGAAGAACTTTCTTTCATACCCCACAGCAAATCTTACGTGTGGAAGCCCCCAATAAAACTGTTTGACTGCTCGTCTGAATACCTCC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5594#0 CTTTCGACGGTTCAAGGTCGGATGCCTGGTGTAGTTTAAGAGGTTATTTATTTCATCTCT 60 consensus_5594#1 CTTTCGACGGTTCAAGGTCGGATGCCTGGTGTAGTTTAAGAGGTTATTTATTTCATCTCT 60 ************************************************************ consensus_5594#0 TGACAAACTGGTTGGTACCTCAATTTACAGTCACTCATTACACACTGCACAATGGATGAG 120 consensus_5594#1 TGACAAACTGGTTGGTACCTCAATTTACAGTCACTCATTACACACTGCACAATGGATGAG 120 ************************************************************ consensus_5594#0 GAAGAACTTTCTTTCATACCCCACAGCAAATCTTACGTGTATGTTTCGGTGGAAGCCCCC 180 consensus_5594#1 GAAGAACTTTATTTCATACCCCACAGCAAATCTTACGTGT----------GGAAGCCCCC 170 ********** ***************************** ********** consensus_5594#0 AATAAAACTGTTTGACTGCTCGTCTGAATACCTCCAAAATTGTCCTGTTGACTACAGTCT 240 consensus_5594#1 AATAAAACTGTTTGACTGCTCGTCTGAATACCTCCAAAATTGTCCTGTTGACTACAGTCT 230 ************************************************************ consensus_5594#0 TCTGGAAAACCCCTTTAACTCCAAAGCAGAAGTGTATGATCCGAAAAAGGAAGCAAAATT 300 consensus_5594#1 TCTGGAAAACCCCTTTAACTCCAAACCAGAAGTGTATGATCCGAAAAAGGAAGCAAAATT 290 ************************* ********************************** consensus_5594#0 ATGGCAAGGATTGGGTATATTAACAACTAA-TACTAGTGAGATCGATAGTGAAAAGCCGG 359 consensus_5594#1 ATGGCAAGGATTGGGTATATTAACAACTAAATACTAGTGAGATCGATAGTGAAAAGCCGC 350 ****************************** **************************** consensus_5594#0 CGAGTGAGAACCCTTATTACTTAACATCAGTAC 392 consensus_5594#1 CGAGTGAGAACCCTTATTACTTAACATCAGTAC 383 ********************************* |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||