cluster # 56

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Schistosoma mansoni
cluster # 56 cluster # 56 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_56#0 length = 450 sequences # 1

consensus_56#1 length = 246 sequences # 1

consensusID : consensus_56#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 450
fasta sequence

                              [CAGACTATCCGTTCAACATAACAAACGAACACAGCATTTGTCATCAAAATTTATTATCATATTCTTCACATGGTGATTCCTGTGGTACAACAGTCAACGCAGTCGCACTTTGCATTCAACTAAATTACATAATCGCATATTGAAGCTGAACCACACATCAATCTACAACGTCAATTCATTATCTCAATTTATTCATATTGTCATTCTTCTCCCTTCTGTTTAATTAGTCTTCATCTATATCTATATATACATCATTGTCATTTGTTAAAATTAGTGTGCCTATTACTTGTCGCTTGCCTATTGGCTTTAACTATTTCTAACTGTCACTCATGATTATGGAGATAGCATTTTTAAAAAATTCTAATACAATTNTGATGCTAACTGTTNTCTGTTTAACTGACTATATGTTTATGTGTTCCTGACACAGTTATTCTGATGCTTATTTGCCCT]

[+] EMBL AI976057             [CAGACTATCCGTTCAACATAACAAACGAACACAGCATTTGTCATCAAAATTTATTATCATATTCTTCACATGGTGATTCCTGTGGTACAACAGTCAACGCAGTCGCACTTTGCATTCAACTAAATTACATAATCGCATATTGAAGCTGAACCACACATCAATCTACAACGTCAATTCATTATCTCAATTTATTCATATTGTCATTCTTCTCCCTTCTGTTTAATTAGTCTTCATCTATATCTATATATACATCATTGTCATTTGTTAAAATTAGTGTGCCTATTACTTGTCGCTTGCCTATTGGCTTTAACTATTTCTAACTGTCACTCATGATTATGGAGATAGCATTTTTAAAAAATTCTAATACAATTNTGATGCTAACTGTTNTCTGTTTAACTGACTATATGTTTATGTGTTCCTGACACAGTTATTCTGATGCTTATTTGCCCT]




>consensus_56#0
CAGACTATCCGTTCAACATAACAAACGAACACAGCATTTGTCATCAAAATTTATTATCAT
ATTCTTCACATGGTGATTCCTGTGGTACAACAGTCAACGCAGTCGCACTTTGCATTCAAC
TAAATTACATAATCGCATATTGAAGCTGAACCACACATCAATCTACAACGTCAATTCATT
ATCTCAATTTATTCATATTGTCATTCTTCTCCCTTCTGTTTAATTAGTCTTCATCTATAT
CTATATATACATCATTGTCATTTGTTAAAATTAGTGTGCCTATTACTTGTCGCTTGCCTA
TTGGCTTTAACTATTTCTAACTGTCACTCATGATTATGGAGATAGCATTTTTAAAAAATT
CTAATACAATTNTGATGCTAACTGTTNTCTGTTTAACTGACTATATGTTTATGTGTTCCT
GACACAGTTATTCTGATGCTTATTTGCCCT

consensusID : consensus_56#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 246
fasta sequence

                              [GCCTCACCCAATCTACACCGTCAATTCATTATCTCAATTTATTCATACTGCCATTCTTCTCCCTTCTGTTTAATTAGTCTTCATCTATATCTATATATACATCATTGTCATTTGTTAAAATTAGTGTGCCTATTACTTGTCGCTTGCCTATTGGCTTTAACTATTTCTAACTGTCACTCATGATTATGGAGATAGCATTTTTAAAAAATTCTAATACAATTTTGATGCTAAAAAAAAAAAAAAAAA]

[-] EMBL AI394957             [GCCTCACCCAATCTACACCGTCAATTCATTATCTCAATTTATTCATACTGCCATTCTTCTCCCTTCTGTTTAATTAGTCTTCATCTATATCTATATATACATCATTGTCATTTGTTAAAATTAGTGTGCCTATTACTTGTCGCTTGCCTATTGGCTTTAACTATTTCTAACTGTCACTCATGATTATGGAGATAGCATTTTTAAAAAATTCTAATACAATTTTGATGCTAAAAAAAAAAAAAAAAA]




>consensus_56#1
GCCTCACCCAATCTACACCGTCAATTCATTATCTCAATTTATTCATACTGCCATTCTTCT
CCCTTCTGTTTAATTAGTCTTCATCTATATCTATATATACATCATTGTCATTTGTTAAAA
TTAGTGTGCCTATTACTTGTCGCTTGCCTATTGGCTTTAACTATTTCTAACTGTCACTCA
TGATTATGGAGATAGCATTTTTAAAAAATTCTAATACAATTTTGATGCTAAAAAAAAAAA
AAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_56#0      CAGACTATCCGTTCAACATAACAAACGAACACAGCATTTGTCATCAAAATTTATTATCAT 60
consensus_56#1      ------------------------------------------------------------
                                                                                

consensus_56#0      ATTCTTCACATGGTGATTCCTGTGGTACAACAGTCAACGCAGTCGCACTTTGCATTCAAC 120
consensus_56#1      ------------------------------------------------------------
                                                                                

consensus_56#0      TAAATTACATAATCGCATATTGAAGCTGAACCACACATCAATCTACAACGTCAATTCATT 180
consensus_56#1      -----------------------------GCCTCAC-CCAATCTACACCGTCAATTCATT 30
                                                  ** ***  ********* ************

consensus_56#0      ATCTCAATTTATTCATATTGTCATTCTTCTCCCTTCTGTTTAATTAGTCTTCATCTATAT 240
consensus_56#1      ATCTCAATTTATTCATACTGCCATTCTTCTCCCTTCTGTTTAATTAGTCTTCATCTATAT 90
                    ***************** ** ***************************************

consensus_56#0      CTATATATACATCATTGTCATTTGTTAAAATTAGTGTGCCTATTACTTGTCGCTTGCCTA 300
consensus_56#1      CTATATATACATCATTGTCATTTGTTAAAATTAGTGTGCCTATTACTTGTCGCTTGCCTA 150
                    ************************************************************

consensus_56#0      TTGGCTTTAACTATTTCTAACTGTCACTCATGATTATGGAGATAGCATTTTTAAAAAATT 360
consensus_56#1      TTGGCTTTAACTATTTCTAACTGTCACTCATGATTATGGAGATAGCATTTTTAAAAAATT 210
                    ************************************************************

consensus_56#0      CTAATACAATTNTGATGCTAACTGTTNTCTGTTTAACTGACTATATGTTTATGTGTTCCT 420
consensus_56#1      CTAATACAATTTTGATGCTAAAAAAAAAAAAAAAAA------------------------ 246
                    *********** *********             **                        

consensus_56#0      GACACAGTTATTCTGATGCTTATTTGCCCT 450
consensus_56#1      ------------------------------